Wall clock time and date at job start Sat Apr 11 2020 07:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.70461 * 2 1 4 4 C 1.53194 * 109.58973 * 120.35978 * 2 1 3 5 5 C 1.53036 * 109.31246 * 174.41986 * 4 2 1 6 6 H 1.09002 * 109.45875 * 178.62792 * 5 4 2 7 7 N 1.46500 * 109.46384 * 58.65869 * 5 4 2 8 8 C 1.34776 * 120.00380 * 154.99426 * 7 5 4 9 9 O 1.21493 * 119.99583 * 0.02562 * 8 7 5 10 10 C 1.48345 * 120.00129 * 179.97438 * 8 7 5 11 11 C 1.41716 * 126.81319 * 179.97438 * 10 8 7 12 12 C 1.37153 * 103.79558 * 180.02562 * 11 10 8 13 13 C 1.47009 * 126.85613 * 179.97438 * 12 11 10 14 14 C 1.36344 * 125.96505 * 179.71575 * 13 12 11 15 15 C 1.40701 * 106.72091 * 179.90720 * 14 13 12 16 16 C 1.34886 * 107.08065 * 0.35584 * 15 14 13 17 17 O 1.34228 * 108.73181 * 359.77420 * 16 15 14 18 18 O 1.34580 * 106.28078 * 0.02562 * 12 11 10 19 19 N 1.20869 * 111.69859 * 0.02562 * 18 12 11 20 20 C 1.53039 * 109.54256 * 298.63553 * 5 4 2 21 21 C 1.53195 * 109.31218 * 61.36445 * 20 5 4 22 22 N 1.46926 * 108.77484 * 305.36764 * 21 20 5 23 23 C 1.36935 * 120.63302 * 233.62633 * 22 21 20 24 24 H 1.07994 * 120.00193 * 150.14323 * 23 22 21 25 25 C 1.38817 * 119.99583 * 330.14601 * 23 22 21 26 26 N 1.31616 * 120.00329 * 344.50268 * 25 23 22 27 27 Si 1.86799 * 119.99700 * 164.50495 * 25 23 22 28 28 H 1.48502 * 109.47201 * 59.99552 * 27 25 23 29 29 H 1.48501 * 109.46943 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47362 * 299.99654 * 27 25 23 31 31 H 1.09003 * 109.46667 * 299.64081 * 1 2 3 32 32 H 1.09000 * 109.47088 * 59.63651 * 1 2 3 33 33 H 1.08997 * 109.47418 * 179.64209 * 1 2 3 34 34 H 1.09000 * 109.49328 * 54.46941 * 4 2 1 35 35 H 1.08997 * 109.52014 * 294.38984 * 4 2 1 36 36 H 0.97005 * 119.99369 * 334.99923 * 7 5 4 37 37 H 1.08000 * 128.09598 * 0.02562 * 11 10 8 38 38 H 1.08004 * 126.63996 * 0.02562 * 14 13 12 39 39 H 1.07999 * 126.45834 * 180.09551 * 15 14 13 40 40 H 1.07995 * 125.63897 * 179.78553 * 16 15 14 41 41 H 1.08993 * 109.50322 * 181.32042 * 20 5 4 42 42 H 1.09000 * 109.49553 * 301.41669 * 20 5 4 43 43 H 1.08997 * 109.58889 * 185.58175 * 21 20 5 44 44 H 1.09005 * 109.70254 * 65.22561 * 21 20 5 45 45 H 0.96996 * 120.00098 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2454 5 6 3.5675 -0.8481 1.1700 6 1 3.9378 -1.3452 2.0666 7 7 4.1571 0.4897 1.0749 8 6 5.4212 0.7002 1.4923 9 8 6.0719 -0.2195 1.9469 10 6 6.0184 2.0547 1.3954 11 6 7.3251 2.4367 1.7890 12 6 7.3770 3.7754 1.4949 13 6 8.5161 4.6807 1.7046 14 6 8.5496 6.0093 1.4001 15 6 9.8249 6.4767 1.7675 16 6 10.5046 5.4235 2.2655 17 8 9.7117 4.3411 2.2261 18 8 6.1765 4.0947 0.9772 19 7 5.4409 3.1368 0.9304 20 6 3.9569 -1.6657 -0.0637 21 6 3.4650 -0.9468 -1.3239 22 7 2.0225 -0.6995 -1.1946 23 6 1.1535 -1.1133 -2.1686 24 1 0.1397 -1.3807 -1.9098 25 6 1.5758 -1.1890 -3.4889 26 7 2.6863 -0.5879 -3.8601 27 14 0.5679 -2.1439 -4.7385 28 1 -0.7928 -1.5562 -4.8301 29 1 1.2284 -2.0715 -6.0665 30 1 0.4665 -3.5629 -4.3124 31 1 -0.3633 0.5083 0.8932 32 1 -0.3633 0.5195 -0.8867 33 1 -0.3634 -1.0276 -0.0064 34 1 1.6030 -1.7254 1.2911 35 1 1.7660 -0.1674 2.1370 36 1 3.6376 1.2239 0.7116 37 1 8.0989 1.8184 2.2196 38 1 7.7511 6.5908 0.9634 39 1 10.1918 7.4874 1.6658 40 1 11.5191 5.4470 2.6349 41 1 5.0411 -1.7696 -0.1040 42 1 3.4983 -2.6528 -0.0055 43 1 3.6517 -1.5715 -2.1974 44 1 3.9900 0.0020 -1.4344 45 1 2.9811 -0.6406 -4.7827 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947595548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:09 Heat of formation + Delta-G solvation = 53.442992 kcal Electronic energy + Delta-G solvation = -29968.556774 eV Core-core repulsion = 25763.505840 eV Total energy + Delta-G solvation = -4205.050934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.32231 -43.55566 -41.26920 -39.30544 -36.05023 -35.36240 -34.51876 -34.14372 -33.72103 -32.80979 -31.40902 -29.83356 -28.09355 -26.97337 -26.10791 -24.58995 -23.87547 -23.30107 -22.39332 -22.29768 -21.41267 -20.30357 -19.89699 -19.14273 -18.31099 -18.15093 -17.63088 -17.14378 -17.06438 -16.74656 -16.27460 -16.10947 -15.75817 -15.54955 -15.34884 -15.06208 -14.79368 -14.50979 -14.18784 -13.89954 -13.72832 -13.48796 -13.40123 -13.26045 -12.93679 -12.84444 -12.70079 -12.53154 -12.35602 -12.21831 -12.02701 -11.78694 -11.74919 -11.72201 -11.51698 -11.47503 -11.03758 -10.89085 -10.52325 -10.21711 -9.25188 -8.61749 -7.84008 -5.30440 -0.51493 0.06911 0.91431 1.13295 1.46314 1.48655 1.54573 1.71037 1.75289 1.95283 2.51905 2.61010 2.67750 3.18090 3.31417 3.58638 3.62090 3.81526 3.93529 3.97943 4.00456 4.01726 4.14400 4.21518 4.38359 4.55658 4.60850 4.62060 4.73963 4.75612 4.87386 4.91116 4.94905 4.98052 5.00025 5.05568 5.11761 5.36109 5.40703 5.47249 5.49857 5.53351 5.70944 5.72965 5.95474 6.22068 6.42729 6.71021 6.88165 7.17256 7.89190 8.41580 9.22419 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016780 B = 0.002421 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.240957 B =11562.458112 C =12169.195515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.157 3.843 3 H 0.014 0.986 4 C -0.125 4.125 5 C 0.157 3.843 6 H 0.091 0.909 7 N -0.693 5.693 8 C 0.597 3.403 9 O -0.551 6.551 10 C -0.032 4.032 11 C -0.164 4.164 12 C 0.050 3.950 13 C 0.003 3.997 14 C -0.147 4.147 15 C -0.224 4.224 16 C 0.001 3.999 17 O -0.174 6.174 18 O 0.152 5.848 19 N -0.335 5.335 20 C -0.143 4.143 21 C 0.188 3.812 22 N -0.600 5.600 23 C -0.248 4.248 24 H 0.078 0.922 25 C -0.055 4.055 26 N -0.939 5.939 27 Si 0.962 3.038 28 H -0.274 1.274 29 H -0.301 1.301 30 H -0.279 1.279 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.408 0.592 37 H 0.198 0.802 38 H 0.172 0.828 39 H 0.185 0.815 40 H 0.254 0.746 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.047 0.953 44 H -0.010 1.010 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.713 13.442 15.796 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.052 3.948 3 H 0.032 0.968 4 C -0.165 4.165 5 C 0.053 3.947 6 H 0.109 0.891 7 N -0.344 5.344 8 C 0.381 3.619 9 O -0.428 6.428 10 C -0.189 4.189 11 C -0.186 4.186 12 C -0.013 4.013 13 C -0.047 4.047 14 C -0.167 4.167 15 C -0.242 4.242 16 C -0.067 4.067 17 O -0.071 6.071 18 O 0.072 5.928 19 N -0.033 5.033 20 C -0.183 4.183 21 C 0.062 3.938 22 N -0.324 5.324 23 C -0.378 4.378 24 H 0.095 0.905 25 C -0.250 4.250 26 N -0.585 5.585 27 Si 0.791 3.209 28 H -0.200 1.200 29 H -0.227 1.227 30 H -0.205 1.205 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.244 0.756 37 H 0.215 0.785 38 H 0.189 0.811 39 H 0.202 0.798 40 H 0.270 0.730 41 H 0.067 0.933 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.008 0.992 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.971 12.612 15.556 23.331 hybrid contribution 0.139 -0.349 -1.288 1.342 sum 12.110 12.263 14.268 22.374 Atomic orbital electron populations 1.21725 0.94168 1.01679 1.01079 1.20664 0.94649 0.92810 0.86704 0.96809 1.22259 0.92391 1.02990 0.98825 1.20991 0.94175 0.81399 0.98096 0.89139 1.46060 1.13256 1.13318 1.61721 1.17006 0.81929 0.85034 0.77961 1.90749 1.61594 1.43072 1.47411 1.23320 0.95453 0.94708 1.05433 1.22820 0.96927 0.93951 1.04882 1.20704 0.87153 0.92286 1.01179 1.17976 0.84866 0.92072 1.09830 1.22401 1.00435 0.92394 1.01500 1.22216 0.93803 1.02440 1.05781 1.25328 0.97728 0.82500 1.01139 1.84066 1.20612 1.38219 1.64172 1.84904 1.18245 1.30469 1.59231 1.74217 1.16243 0.95561 1.17246 1.22396 0.99492 0.99717 0.96652 1.20370 0.83634 0.95352 0.94462 1.44348 1.02562 1.65652 1.19860 1.19475 0.95651 1.36207 0.86500 0.90461 1.25844 0.99133 1.01023 0.98996 1.70185 1.26058 1.45808 1.16466 0.85421 0.78380 0.79106 0.78024 1.19982 1.22731 1.20500 0.90535 0.94169 0.92711 0.89630 0.89171 0.75577 0.78511 0.81077 0.79760 0.72991 0.93285 0.90903 0.93438 0.99164 0.94557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 7.95 71.98 0.57 -3.87 16 2 C 0.16 6.08 3.20 44.97 0.14 6.22 16 3 H 0.01 0.57 6.64 -2.38 -0.02 0.56 16 4 C -0.13 -3.92 5.07 30.67 0.16 -3.76 16 5 C 0.16 5.36 2.78 45.02 0.13 5.49 16 6 H 0.09 2.93 7.58 -2.39 -0.02 2.91 16 7 N -0.69 -24.03 4.27 -444.81 -1.90 -25.93 16 8 C 0.60 21.13 7.81 86.93 0.68 21.81 16 9 O -0.55 -21.51 16.61 -3.69 -0.06 -21.57 16 10 C -0.03 -1.03 7.17 42.79 0.31 -0.72 16 11 C -0.16 -4.33 10.96 22.87 0.25 -4.08 16 12 C 0.05 1.19 7.30 24.32 0.18 1.37 16 13 C 0.00 0.05 7.17 24.13 0.17 0.22 16 14 C -0.15 -2.18 10.86 22.43 0.24 -1.93 16 15 C -0.22 -2.15 10.88 22.10 0.24 -1.91 16 16 C 0.00 0.01 12.08 67.05 0.81 0.82 16 17 O -0.17 -2.96 10.67 -6.56 -0.07 -3.03 16 18 O 0.15 3.99 11.21 66.46 0.74 4.74 16 19 N -0.34 -10.36 11.81 -48.87 -0.58 -10.94 16 20 C -0.14 -5.74 5.77 30.67 0.18 -5.56 16 21 C 0.19 9.29 5.02 86.36 0.43 9.72 16 22 N -0.60 -29.13 2.99 -675.20 -2.02 -31.15 16 23 C -0.25 -13.18 8.58 84.04 0.72 -12.46 16 24 H 0.08 3.92 6.23 -2.91 -0.02 3.90 16 25 C -0.06 -3.08 4.94 84.86 0.42 -2.66 16 26 N -0.94 -56.52 11.23 21.65 0.24 -56.28 16 27 Si 0.96 45.20 29.58 68.60 2.03 47.23 16 28 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 29 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 30 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.54 7.67 -2.39 -0.02 1.53 16 33 H 0.05 1.88 7.40 -2.39 -0.02 1.87 16 34 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.41 14.31 6.62 -92.70 -0.61 13.70 16 37 H 0.20 4.58 8.06 -2.91 -0.02 4.55 16 38 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.19 0.68 8.06 -2.91 -0.02 0.65 16 40 H 0.25 -0.20 8.06 -2.91 -0.02 -0.22 16 41 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 43 H 0.05 2.70 6.15 -2.39 -0.01 2.68 16 44 H -0.01 -0.52 7.75 -2.38 -0.02 -0.54 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -71.04 374.50 4.45 -66.59 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.42 Total: 21.64 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 5.63 Total: 8.70 kcal Atomic # 7 Polarization: -120.04 SS G_CDS: -4.25 Total: -124.29 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.61 Total: -19.86 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.04 4.45 -66.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947595548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.034 kcal (2) G-P(sol) polarization free energy of solvation -71.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds