Wall clock time and date at job start Sat Apr 11 2020 07:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.69538 * 2 1 4 4 C 1.53191 * 109.58500 * 239.64881 * 2 1 3 5 5 C 1.53048 * 109.30948 * 185.57312 * 4 2 1 6 6 H 1.08999 * 109.45932 * 181.38026 * 5 4 2 7 7 N 1.46491 * 109.46181 * 301.35569 * 5 4 2 8 8 C 1.34775 * 120.00346 * 204.99724 * 7 5 4 9 9 O 1.21599 * 119.99425 * 0.02562 * 8 7 5 10 10 C 1.47521 * 120.00393 * 180.02562 * 8 7 5 11 11 C 1.40090 * 119.93064 * 359.72562 * 10 8 7 12 12 C 1.36299 * 120.38476 * 179.77753 * 11 10 8 13 13 C 1.39860 * 120.03995 * 0.48149 * 12 11 10 14 14 N 1.35809 * 133.51364 * 179.75601 * 13 12 11 15 15 C 1.30786 * 108.79339 * 180.02562 * 14 13 12 16 16 O 1.35099 * 124.92281 * 180.02562 * 15 14 13 17 17 O 1.34320 * 110.15712 * 359.97438 * 15 14 13 18 18 C 1.35313 * 108.12985 * 0.02562 * 17 15 14 19 19 C 1.38097 * 133.76380 * 180.02562 * 18 17 15 20 20 C 1.53350 * 109.60469 * 61.37550 * 5 4 2 21 21 C 1.53190 * 109.15046 * 298.70723 * 20 5 4 22 22 N 1.46924 * 109.58825 * 120.35302 * 2 1 3 23 23 C 1.36932 * 120.63220 * 353.37983 * 22 2 1 24 24 H 1.07998 * 120.00257 * 29.06845 * 23 22 2 25 25 C 1.38815 * 120.00022 * 209.06619 * 23 22 2 26 26 N 1.31620 * 120.00010 * 15.04378 * 25 23 22 27 27 Si 1.86798 * 120.00070 * 195.04313 * 25 23 22 28 28 H 1.48503 * 109.47325 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47084 * 120.00070 * 27 25 23 30 30 H 1.48498 * 109.47107 * 240.00011 * 27 25 23 31 31 H 1.09004 * 109.47399 * 299.63889 * 1 2 3 32 32 H 1.08996 * 109.47328 * 59.64426 * 1 2 3 33 33 H 1.09001 * 109.46880 * 179.64614 * 1 2 3 34 34 H 1.08994 * 109.49465 * 305.52505 * 4 2 1 35 35 H 1.08995 * 109.49846 * 65.58924 * 4 2 1 36 36 H 0.97010 * 120.00178 * 25.00625 * 7 5 4 37 37 H 1.07995 * 119.80954 * 0.02562 * 11 10 8 38 38 H 1.07998 * 119.97831 * 180.26150 * 12 11 10 39 39 H 0.96697 * 113.99877 * 89.97087 * 16 15 14 40 40 H 1.08000 * 120.18222 * 359.97438 * 19 18 17 41 41 H 1.09002 * 109.68189 * 178.74772 * 20 5 4 42 42 H 1.08999 * 109.47956 * 58.54713 * 20 5 4 43 43 H 1.09006 * 109.58831 * 294.72750 * 21 20 5 44 44 H 1.09000 * 109.59385 * 174.43893 * 21 20 5 45 45 H 0.96996 * 120.00153 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8478 -1.1702 6 1 3.9378 -1.3446 -2.0669 7 7 4.1569 0.4899 -1.0747 8 6 5.4210 0.7008 -1.4919 9 8 6.0721 -0.2194 -1.9481 10 6 6.0148 2.0477 -1.3952 11 6 5.2615 3.1080 -0.8748 12 6 5.8024 4.3552 -0.7771 13 6 7.1133 4.5855 -1.2067 14 7 7.9060 5.6877 -1.2412 15 6 9.0658 5.3568 -1.7470 16 8 10.1006 6.2061 -1.9296 17 8 9.0796 4.0501 -2.0575 18 6 7.8737 3.5279 -1.7348 19 6 7.3244 2.2643 -1.8271 20 6 3.9595 -1.6672 0.0653 21 6 3.4651 -0.9469 1.3236 22 7 2.0226 -0.6995 1.1945 23 6 1.1538 -1.1127 2.1689 24 1 0.1363 -1.3678 1.9124 25 6 1.5811 -1.2037 3.4866 26 7 2.7038 -0.6244 3.8559 27 14 0.5627 -2.1484 4.7355 28 1 -0.6458 -2.7010 4.0726 29 1 1.3726 -3.2599 5.2955 30 1 0.1513 -1.2347 5.8315 31 1 -0.3634 0.5082 0.8932 32 1 -0.3634 0.5193 -0.8867 33 1 -0.3633 -1.0277 -0.0063 34 1 1.6030 -1.7252 -1.2914 35 1 1.7654 -0.1670 -2.1368 36 1 3.6375 1.2241 -0.7110 37 1 4.2476 2.9353 -0.5455 38 1 5.2171 5.1669 -0.3710 39 1 10.7002 6.2637 -1.1732 40 1 7.9046 1.4482 -2.2318 41 1 5.0437 -1.7712 0.1080 42 1 3.5009 -2.6543 0.0073 43 1 3.9903 0.0022 1.4316 44 1 3.6521 -1.5695 2.1985 45 1 3.0021 -0.6877 4.7766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948074268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:25 Heat of formation + Delta-G solvation = -3.615173 kcal Electronic energy + Delta-G solvation = -30227.467901 eV Core-core repulsion = 26019.942739 eV Total energy + Delta-G solvation = -4207.525162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -43.60687 -40.20031 -38.69769 -38.01611 -37.23348 -34.93558 -34.41929 -32.43294 -31.53754 -31.04708 -30.10964 -29.11611 -26.44989 -25.12220 -24.37013 -23.84566 -22.32980 -22.06102 -21.35414 -20.66793 -19.65398 -18.89507 -18.44165 -17.92366 -17.44769 -16.52917 -16.08405 -15.68900 -15.29209 -15.19805 -14.86376 -14.51569 -14.34667 -14.04440 -14.00479 -13.75045 -13.56581 -13.18804 -12.99380 -12.70772 -12.61566 -12.44195 -11.88662 -11.79178 -11.56825 -11.47324 -11.24932 -11.04511 -10.85965 -10.71808 -10.67655 -10.43389 -10.19451 -10.11531 -9.85393 -9.73280 -9.33759 -9.22302 -8.84484 -8.60835 -8.49346 -6.67926 -5.81204 -3.25478 0.01894 0.87623 1.44064 1.80924 2.81886 2.98726 3.34393 3.37543 3.43126 3.44038 3.61229 4.09293 4.45344 4.48037 4.61138 4.73524 4.82214 4.98299 5.26440 5.29358 5.32405 5.35696 5.56450 5.61242 5.64264 5.70757 5.88248 5.93059 5.94692 6.05148 6.15673 6.21230 6.26485 6.31653 6.40207 6.51505 6.57721 6.58554 6.71387 6.89119 6.95862 7.00228 7.11190 7.34358 7.65955 7.70495 7.79322 8.33828 8.42566 9.18403 9.81827 10.37756 11.26743 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016403 B = 0.002573 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.614663 B =10880.786397 C =11469.250895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.168 3.832 3 H 0.019 0.981 4 C -0.140 4.140 5 C 0.154 3.846 6 H 0.075 0.925 7 N -0.702 5.702 8 C 0.559 3.441 9 O -0.540 6.540 10 C -0.099 4.099 11 C -0.080 4.080 12 C -0.063 4.063 13 C 0.050 3.950 14 N -0.464 5.464 15 C 0.421 3.579 16 O -0.408 6.408 17 O -0.221 6.221 18 C 0.009 3.991 19 C -0.027 4.027 20 C -0.154 4.154 21 C 0.174 3.826 22 N -0.586 5.586 23 C -0.250 4.250 24 H 0.070 0.930 25 C 0.003 3.997 26 N -0.902 5.902 27 Si 0.900 3.100 28 H -0.278 1.278 29 H -0.290 1.290 30 H -0.291 1.291 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.401 0.599 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.422 0.578 40 H 0.152 0.848 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.018 0.982 44 H 0.087 0.913 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.682 9.908 -11.139 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.061 3.939 3 H 0.036 0.964 4 C -0.180 4.180 5 C 0.050 3.950 6 H 0.093 0.907 7 N -0.354 5.354 8 C 0.346 3.654 9 O -0.419 6.419 10 C -0.103 4.103 11 C -0.100 4.100 12 C -0.082 4.082 13 C -0.063 4.063 14 N -0.208 5.208 15 C 0.172 3.828 16 O -0.216 6.216 17 O -0.114 6.114 18 C -0.041 4.041 19 C -0.047 4.047 20 C -0.194 4.194 21 C 0.048 3.952 22 N -0.310 5.310 23 C -0.379 4.379 24 H 0.088 0.912 25 C -0.196 4.196 26 N -0.546 5.546 27 Si 0.730 3.270 28 H -0.203 1.203 29 H -0.217 1.217 30 H -0.218 1.218 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.075 0.925 36 H 0.239 0.761 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.283 0.717 40 H 0.169 0.831 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.036 0.964 44 H 0.105 0.895 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 8.870 9.936 -11.653 17.697 hybrid contribution 0.129 -0.610 1.164 1.321 sum 8.999 9.326 -10.488 16.672 Atomic orbital electron populations 1.21807 0.95777 1.01571 1.00341 1.20384 0.93242 0.93002 0.87275 0.96393 1.22382 0.93759 1.02531 0.99280 1.21011 0.93084 0.81861 0.99021 0.90678 1.46061 1.13542 1.13075 1.62719 1.17836 0.82128 0.87130 0.78355 1.90777 1.61029 1.43959 1.46155 1.19827 0.93644 0.94631 1.02151 1.21018 1.00491 0.91352 0.97158 1.19976 0.91157 0.97887 0.99132 1.19769 0.96388 0.88026 1.02127 1.71027 1.01672 1.28183 1.19892 1.22519 0.89008 0.78173 0.93087 1.84881 1.36967 1.54821 1.44940 1.84496 1.33871 1.23897 1.69180 1.19749 0.83847 0.96361 1.04128 1.19857 0.93895 0.92695 0.98257 1.22623 1.00000 0.99458 0.97361 1.20733 0.83074 0.97163 0.94206 1.44142 1.03010 1.64965 1.18882 1.19204 0.94820 1.37731 0.86189 0.91204 1.25076 0.97783 0.99731 0.96987 1.70014 1.23307 1.44569 1.16755 0.86269 0.79664 0.79558 0.81533 1.20299 1.21663 1.21818 0.91886 0.94274 0.92653 0.90481 0.92464 0.76133 0.83680 0.83587 0.71719 0.83052 0.92667 0.91671 0.96415 0.89464 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 7.94 37.16 0.30 -2.03 16 2 C 0.17 3.04 3.20 -67.60 -0.22 2.83 16 3 H 0.02 0.33 6.64 -51.93 -0.34 -0.02 16 4 C -0.14 -2.16 5.08 -26.61 -0.14 -2.29 16 5 C 0.15 2.50 2.78 -67.73 -0.19 2.31 16 6 H 0.08 1.22 7.58 -51.93 -0.39 0.83 16 7 N -0.70 -10.47 4.21 -54.66 -0.23 -10.70 16 8 C 0.56 8.60 7.72 -12.48 -0.10 8.51 16 9 O -0.54 -9.85 15.99 5.28 0.08 -9.76 16 10 C -0.10 -1.29 5.88 -104.92 -0.62 -1.90 16 11 C -0.08 -0.89 9.46 -39.59 -0.37 -1.27 16 12 C -0.06 -0.68 10.03 -39.67 -0.40 -1.08 16 13 C 0.05 0.63 7.23 -84.62 -0.61 0.01 16 14 N -0.46 -5.74 11.36 -12.72 -0.14 -5.88 16 15 C 0.42 4.44 9.54 52.32 0.50 4.94 16 16 O -0.41 -2.77 13.62 -40.30 -0.55 -3.32 16 17 O -0.22 -2.61 10.79 -20.51 -0.22 -2.83 16 18 C 0.01 0.11 7.40 -38.76 -0.29 -0.18 16 19 C -0.03 -0.35 9.60 -39.13 -0.38 -0.72 16 20 C -0.15 -2.91 5.80 -26.45 -0.15 -3.06 16 21 C 0.17 3.90 5.02 -3.71 -0.02 3.88 16 22 N -0.59 -13.24 2.99 -164.77 -0.49 -13.73 16 23 C -0.25 -6.32 8.60 -15.06 -0.13 -6.45 16 24 H 0.07 1.73 6.21 -52.49 -0.33 1.41 16 25 C 0.00 0.07 4.96 -17.43 -0.09 -0.01 16 26 N -0.90 -25.05 11.14 55.49 0.62 -24.43 16 27 Si 0.90 20.99 29.58 -169.99 -5.03 15.96 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 31 H 0.06 1.17 7.62 -51.93 -0.40 0.77 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.96 7.45 -51.93 -0.39 0.58 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.40 5.50 4.86 -40.82 -0.20 5.30 16 37 H 0.15 1.38 6.36 -52.49 -0.33 1.05 16 38 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.42 0.29 9.06 45.56 0.41 0.71 16 40 H 0.15 1.86 7.64 -52.49 -0.40 1.46 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.02 0.42 7.74 -51.93 -0.40 0.01 16 44 H 0.09 2.27 6.06 -51.93 -0.31 1.95 16 45 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -32.37 365.53 -8.10 -40.48 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.75 Total: 5.23 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: -2.89 Total: 3.48 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.25 Total: -54.74 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.69 Total: -15.91 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.37 -8.10 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948074268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.863 kcal (2) G-P(sol) polarization free energy of solvation -32.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds