Wall clock time and date at job start Sat Apr 11 2020 07:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.69538 * 2 1 4 4 C 1.53191 * 109.58500 * 239.64881 * 2 1 3 5 5 C 1.53048 * 109.30948 * 185.57312 * 4 2 1 6 6 H 1.08999 * 109.45932 * 181.38026 * 5 4 2 7 7 N 1.46491 * 109.46181 * 301.35569 * 5 4 2 8 8 C 1.34775 * 120.00346 * 204.99724 * 7 5 4 9 9 O 1.21599 * 119.99425 * 0.02562 * 8 7 5 10 10 C 1.47521 * 120.00393 * 180.02562 * 8 7 5 11 11 C 1.40090 * 119.93064 * 359.72562 * 10 8 7 12 12 C 1.36299 * 120.38476 * 179.77753 * 11 10 8 13 13 C 1.39860 * 120.03995 * 0.48149 * 12 11 10 14 14 N 1.35809 * 133.51364 * 179.75601 * 13 12 11 15 15 C 1.30786 * 108.79339 * 180.02562 * 14 13 12 16 16 O 1.35099 * 124.92281 * 180.02562 * 15 14 13 17 17 O 1.34320 * 110.15712 * 359.97438 * 15 14 13 18 18 C 1.35313 * 108.12985 * 0.02562 * 17 15 14 19 19 C 1.38097 * 133.76380 * 180.02562 * 18 17 15 20 20 C 1.53350 * 109.60469 * 61.37550 * 5 4 2 21 21 C 1.53190 * 109.15046 * 298.70723 * 20 5 4 22 22 N 1.46924 * 109.58825 * 120.35302 * 2 1 3 23 23 C 1.36932 * 120.63220 * 353.37983 * 22 2 1 24 24 H 1.07998 * 120.00257 * 29.06845 * 23 22 2 25 25 C 1.38815 * 120.00022 * 209.06619 * 23 22 2 26 26 N 1.31620 * 120.00010 * 15.04378 * 25 23 22 27 27 Si 1.86798 * 120.00070 * 195.04313 * 25 23 22 28 28 H 1.48503 * 109.47325 * 359.97438 * 27 25 23 29 29 H 1.48497 * 109.47084 * 120.00070 * 27 25 23 30 30 H 1.48498 * 109.47107 * 240.00011 * 27 25 23 31 31 H 1.09004 * 109.47399 * 299.63889 * 1 2 3 32 32 H 1.08996 * 109.47328 * 59.64426 * 1 2 3 33 33 H 1.09001 * 109.46880 * 179.64614 * 1 2 3 34 34 H 1.08994 * 109.49465 * 305.52505 * 4 2 1 35 35 H 1.08995 * 109.49846 * 65.58924 * 4 2 1 36 36 H 0.97010 * 120.00178 * 25.00625 * 7 5 4 37 37 H 1.07995 * 119.80954 * 0.02562 * 11 10 8 38 38 H 1.07998 * 119.97831 * 180.26150 * 12 11 10 39 39 H 0.96697 * 113.99877 * 89.97087 * 16 15 14 40 40 H 1.08000 * 120.18222 * 359.97438 * 19 18 17 41 41 H 1.09002 * 109.68189 * 178.74772 * 20 5 4 42 42 H 1.08999 * 109.47956 * 58.54713 * 20 5 4 43 43 H 1.09006 * 109.58831 * 294.72750 * 21 20 5 44 44 H 1.09000 * 109.59385 * 174.43893 * 21 20 5 45 45 H 0.96996 * 120.00153 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 -1.2455 5 6 3.5675 -0.8478 -1.1702 6 1 3.9378 -1.3446 -2.0669 7 7 4.1569 0.4899 -1.0747 8 6 5.4210 0.7008 -1.4919 9 8 6.0721 -0.2194 -1.9481 10 6 6.0148 2.0477 -1.3952 11 6 5.2615 3.1080 -0.8748 12 6 5.8024 4.3552 -0.7771 13 6 7.1133 4.5855 -1.2067 14 7 7.9060 5.6877 -1.2412 15 6 9.0658 5.3568 -1.7470 16 8 10.1006 6.2061 -1.9296 17 8 9.0796 4.0501 -2.0575 18 6 7.8737 3.5279 -1.7348 19 6 7.3244 2.2643 -1.8271 20 6 3.9595 -1.6672 0.0653 21 6 3.4651 -0.9469 1.3236 22 7 2.0226 -0.6995 1.1945 23 6 1.1538 -1.1127 2.1689 24 1 0.1363 -1.3678 1.9124 25 6 1.5811 -1.2037 3.4866 26 7 2.7038 -0.6244 3.8559 27 14 0.5627 -2.1484 4.7355 28 1 -0.6458 -2.7010 4.0726 29 1 1.3726 -3.2599 5.2955 30 1 0.1513 -1.2347 5.8315 31 1 -0.3634 0.5082 0.8932 32 1 -0.3634 0.5193 -0.8867 33 1 -0.3633 -1.0277 -0.0063 34 1 1.6030 -1.7252 -1.2914 35 1 1.7654 -0.1670 -2.1368 36 1 3.6375 1.2241 -0.7110 37 1 4.2476 2.9353 -0.5455 38 1 5.2171 5.1669 -0.3710 39 1 10.7002 6.2637 -1.1732 40 1 7.9046 1.4482 -2.2318 41 1 5.0437 -1.7712 0.1080 42 1 3.5009 -2.6543 0.0073 43 1 3.9903 0.0022 1.4316 44 1 3.6521 -1.5695 2.1985 45 1 3.0021 -0.6877 4.7766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948074268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:24 Heat of formation + Delta-G solvation = -28.814793 kcal Electronic energy + Delta-G solvation = -30228.560638 eV Core-core repulsion = 26019.942739 eV Total energy + Delta-G solvation = -4208.617899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.48373 -41.41459 -39.68757 -39.05331 -38.29930 -35.94001 -35.83300 -34.08907 -32.96269 -31.98321 -31.62778 -30.29290 -27.94095 -26.80151 -25.42529 -24.74464 -23.73500 -23.15902 -22.50712 -22.12453 -20.46215 -20.28712 -19.54065 -18.81215 -18.39625 -18.13869 -17.13894 -17.09781 -16.81235 -16.22696 -16.00993 -15.69824 -15.50709 -15.45432 -15.30593 -15.07455 -14.70687 -14.47596 -14.41335 -14.09315 -13.61804 -13.36700 -13.30992 -13.15022 -12.85351 -12.67460 -12.61720 -12.50644 -12.41871 -12.27964 -12.10744 -11.93140 -11.75298 -11.65521 -11.37458 -11.12208 -10.94135 -10.47408 -10.14806 -10.05656 -9.61994 -8.54541 -7.78448 -5.22891 -0.88731 -0.02143 0.64043 0.91058 1.47448 1.51463 1.59138 1.77138 2.05740 2.33096 2.55932 2.59037 3.20287 3.37170 3.56075 3.68503 3.73631 3.82016 3.86832 4.00067 4.11963 4.12681 4.25205 4.48996 4.54164 4.64785 4.71311 4.75542 4.81864 4.84099 4.97754 4.98446 5.03126 5.04020 5.09796 5.16636 5.21692 5.31767 5.47084 5.57111 5.59709 5.63893 5.78518 5.83274 6.13919 6.26193 6.48797 6.51443 7.14388 7.24223 7.97252 8.47292 9.27273 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016403 B = 0.002573 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.614663 B =10880.786397 C =11469.250895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.159 3.841 3 H 0.030 0.970 4 C -0.127 4.127 5 C 0.160 3.840 6 H 0.082 0.918 7 N -0.697 5.697 8 C 0.561 3.439 9 O -0.573 6.573 10 C -0.112 4.112 11 C -0.072 4.072 12 C -0.061 4.061 13 C 0.045 3.955 14 N -0.489 5.489 15 C 0.438 3.562 16 O -0.402 6.402 17 O -0.227 6.227 18 C -0.006 4.006 19 C -0.028 4.028 20 C -0.143 4.143 21 C 0.186 3.814 22 N -0.601 5.601 23 C -0.241 4.241 24 H 0.075 0.925 25 C -0.053 4.053 26 N -0.934 5.934 27 Si 0.954 3.046 28 H -0.266 1.266 29 H -0.299 1.299 30 H -0.297 1.297 31 H 0.041 0.959 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.093 0.907 36 H 0.408 0.592 37 H 0.163 0.837 38 H 0.169 0.831 39 H 0.449 0.551 40 H 0.149 0.851 41 H 0.046 0.954 42 H 0.062 0.938 43 H 0.002 0.998 44 H 0.045 0.955 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.879 11.215 -12.725 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.053 3.947 3 H 0.047 0.953 4 C -0.166 4.166 5 C 0.056 3.944 6 H 0.100 0.900 7 N -0.349 5.349 8 C 0.349 3.651 9 O -0.454 6.454 10 C -0.116 4.116 11 C -0.092 4.092 12 C -0.080 4.080 13 C -0.068 4.068 14 N -0.233 5.233 15 C 0.189 3.811 16 O -0.215 6.215 17 O -0.122 6.122 18 C -0.055 4.055 19 C -0.048 4.048 20 C -0.183 4.183 21 C 0.060 3.940 22 N -0.325 5.325 23 C -0.372 4.372 24 H 0.093 0.907 25 C -0.248 4.248 26 N -0.581 5.581 27 Si 0.784 3.216 28 H -0.190 1.190 29 H -0.226 1.226 30 H -0.224 1.224 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.247 0.753 37 H 0.180 0.820 38 H 0.187 0.813 39 H 0.316 0.684 40 H 0.166 0.834 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.020 0.980 44 H 0.064 0.936 45 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.058 11.268 -13.249 19.169 hybrid contribution 0.490 -0.908 1.592 1.897 sum 8.548 10.360 -11.657 17.785 Atomic orbital electron populations 1.21750 0.94596 1.01374 1.01197 1.20681 0.94308 0.93372 0.86293 0.95284 1.22263 0.92519 1.02688 0.99110 1.20888 0.93938 0.82131 0.97479 0.90029 1.45969 1.13579 1.12760 1.62566 1.18129 0.81869 0.87670 0.77425 1.90756 1.61745 1.45237 1.47709 1.19646 0.94070 0.93939 1.03905 1.21153 1.00947 0.90825 0.96229 1.20231 0.90815 0.98366 0.98582 1.20070 0.96952 0.88061 1.01758 1.71051 1.02396 1.28268 1.21541 1.22741 0.89483 0.77907 0.90964 1.84863 1.36562 1.53434 1.46652 1.84501 1.33662 1.24585 1.69410 1.19752 0.84324 0.96437 1.05019 1.19835 0.93936 0.92855 0.98197 1.22448 0.99241 0.99483 0.97172 1.20410 0.83502 0.95865 0.94207 1.44351 1.02603 1.65783 1.19750 1.19508 0.95162 1.35915 0.86616 0.90699 1.25708 0.98957 1.01352 0.98792 1.70157 1.24990 1.46597 1.16402 0.85393 0.78675 0.78005 0.79518 1.19002 1.22645 1.22420 0.94003 0.90416 0.93394 0.90586 0.88896 0.75299 0.82001 0.81326 0.68444 0.83374 0.93532 0.91911 0.97954 0.93628 0.94669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 7.94 71.98 0.57 -3.51 16 2 C 0.16 5.39 3.20 44.97 0.14 5.53 16 3 H 0.03 0.96 6.64 -2.39 -0.02 0.94 16 4 C -0.13 -3.51 5.08 30.67 0.16 -3.36 16 5 C 0.16 4.91 2.78 45.13 0.13 5.04 16 6 H 0.08 2.49 7.58 -2.39 -0.02 2.47 16 7 N -0.70 -19.74 4.21 -445.09 -1.87 -21.62 16 8 C 0.56 16.90 7.72 86.69 0.67 17.57 16 9 O -0.57 -20.85 15.99 -4.03 -0.06 -20.91 16 10 C -0.11 -2.84 5.88 -20.06 -0.12 -2.96 16 11 C -0.07 -1.48 9.46 22.27 0.21 -1.27 16 12 C -0.06 -1.23 10.03 22.21 0.22 -1.00 16 13 C 0.04 1.06 7.23 39.49 0.29 1.34 16 14 N -0.49 -11.36 11.36 -422.43 -4.80 -16.16 16 15 C 0.44 8.55 9.54 130.40 1.24 9.79 16 16 O -0.40 -4.54 13.62 -61.47 -0.84 -5.38 16 17 O -0.23 -5.17 10.79 9.36 0.10 -5.07 16 18 C -0.01 -0.14 7.40 22.80 0.17 0.03 16 19 C -0.03 -0.72 9.60 22.56 0.22 -0.50 16 20 C -0.14 -5.41 5.80 30.78 0.18 -5.23 16 21 C 0.19 8.49 5.02 86.36 0.43 8.93 16 22 N -0.60 -26.86 2.99 -675.22 -2.02 -28.88 16 23 C -0.24 -12.17 8.60 84.04 0.72 -11.45 16 24 H 0.08 3.65 6.21 -2.91 -0.02 3.63 16 25 C -0.05 -2.85 4.96 84.86 0.42 -2.43 16 26 N -0.93 -53.45 11.14 21.65 0.24 -53.21 16 27 Si 0.95 43.79 29.58 68.60 2.03 45.82 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 30 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 31 H 0.04 1.46 7.62 -2.38 -0.02 1.44 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.05 1.54 7.45 -2.39 -0.02 1.53 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.41 10.34 4.86 -92.70 -0.45 9.89 16 37 H 0.16 2.70 6.36 -2.91 -0.02 2.69 16 38 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.45 -0.58 9.06 -74.06 -0.67 -1.25 16 40 H 0.15 3.73 7.64 -2.91 -0.02 3.70 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 42 H 0.06 2.37 8.14 -2.39 -0.02 2.36 16 43 H 0.00 0.12 7.74 -2.38 -0.02 0.10 16 44 H 0.05 2.46 6.06 -2.39 -0.01 2.45 16 45 H 0.24 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -71.22 365.53 -1.63 -72.84 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -0.05 Total: 16.03 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: 5.65 Total: 16.53 kcal Atomic # 7 Polarization: -111.41 SS G_CDS: -8.45 Total: -119.86 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.80 Total: -31.36 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -71.22 -1.63 -72.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948074268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.027 kcal (2) G-P(sol) polarization free energy of solvation -71.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds