Wall clock time and date at job start Sat Apr 11 2020 07:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.70051 * 2 1 4 4 C 1.53185 * 109.58755 * 239.64230 * 2 1 3 5 5 C 1.53047 * 109.31071 * 185.57650 * 4 2 1 6 6 H 1.08993 * 109.45898 * 301.35605 * 5 4 2 7 7 N 1.46500 * 109.46021 * 181.38415 * 5 4 2 8 8 C 1.34775 * 120.00268 * 154.99940 * 7 5 4 9 9 O 1.21598 * 119.99620 * 359.97438 * 8 7 5 10 10 C 1.47516 * 120.00281 * 180.02562 * 8 7 5 11 11 C 1.40099 * 119.93329 * 0.02562 * 10 8 7 12 12 C 1.36296 * 120.38609 * 180.29675 * 11 10 8 13 13 C 1.39851 * 120.04264 * 359.45661 * 12 11 10 14 14 N 1.35808 * 133.52028 * 180.21111 * 13 12 11 15 15 C 1.30783 * 108.79991 * 180.29582 * 14 13 12 16 16 O 1.35096 * 124.92387 * 179.97438 * 15 14 13 17 17 O 1.34326 * 110.15802 * 0.02562 * 15 14 13 18 18 C 1.35311 * 108.12238 * 0.02562 * 17 15 14 19 19 C 1.38110 * 133.76171 * 180.02562 * 18 17 15 20 20 C 1.53037 * 109.53720 * 61.36828 * 5 4 2 21 21 C 1.53196 * 109.30973 * 298.63042 * 20 5 4 22 22 N 1.46924 * 109.58592 * 120.34974 * 2 1 3 23 23 C 1.36942 * 120.63079 * 353.38053 * 22 2 1 24 24 H 1.07993 * 120.00204 * 29.05244 * 23 22 2 25 25 C 1.38816 * 119.99561 * 209.05736 * 23 22 2 26 26 N 1.31610 * 120.00535 * 15.04608 * 25 23 22 27 27 Si 1.86800 * 119.99635 * 195.05004 * 25 23 22 28 28 H 1.48502 * 109.47136 * 59.99532 * 27 25 23 29 29 H 1.48500 * 109.47487 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.47280 * 299.99918 * 27 25 23 31 31 H 1.09001 * 109.46950 * 180.35461 * 1 2 3 32 32 H 1.09001 * 109.47094 * 300.35797 * 1 2 3 33 33 H 1.08994 * 109.46912 * 60.35716 * 1 2 3 34 34 H 1.09001 * 109.49945 * 65.62835 * 4 2 1 35 35 H 1.09003 * 109.52626 * 305.54349 * 4 2 1 36 36 H 0.97011 * 119.99943 * 335.00571 * 7 5 4 37 37 H 1.08000 * 119.80197 * 0.02562 * 11 10 8 38 38 H 1.07995 * 119.97362 * 179.72254 * 12 11 10 39 39 H 0.96703 * 113.99835 * 0.02562 * 16 15 14 40 40 H 1.08001 * 120.17936 * 359.97438 * 19 18 17 41 41 H 1.08996 * 109.50388 * 58.58277 * 20 5 4 42 42 H 1.08998 * 109.49748 * 178.68374 * 20 5 4 43 43 H 1.08993 * 109.59123 * 294.84613 * 21 20 5 44 44 H 1.09006 * 109.69944 * 174.49195 * 21 20 5 45 45 H 0.96998 * 120.00613 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2453 5 6 3.5676 -0.8479 -1.1700 6 1 4.0061 0.1474 -1.0990 7 7 4.0654 -1.5158 -2.3752 8 6 5.3296 -1.3022 -2.7906 9 8 6.0569 -0.5548 -2.1653 10 6 5.8306 -1.9742 -4.0044 11 6 4.9910 -2.8338 -4.7247 12 6 5.4462 -3.4642 -5.8441 13 6 6.7547 -3.2465 -6.2870 14 7 7.4757 -3.7129 -7.3392 15 6 8.6748 -3.1929 -7.2921 16 8 9.6595 -3.4376 -8.1840 17 8 8.7858 -2.3812 -6.2276 18 6 7.6038 -2.3866 -5.5691 19 6 7.1411 -1.7545 -4.4316 20 6 3.9570 -1.6656 0.0636 21 6 3.4651 -0.9468 1.3238 22 7 2.0226 -0.6994 1.1945 23 6 1.1537 -1.1126 2.1690 24 1 0.1361 -1.3675 1.9125 25 6 1.5810 -1.2037 3.4866 26 7 2.7037 -0.6246 3.8560 27 14 0.5626 -2.1485 4.7355 28 1 0.4341 -3.5628 4.3013 29 1 1.2313 -2.0967 6.0604 30 1 -0.7870 -1.5375 4.8375 31 1 -0.3633 -1.0277 0.0064 32 1 -0.3633 0.5194 0.8868 33 1 -0.3633 0.5083 -0.8931 34 1 1.7661 -0.1669 -2.1368 35 1 1.6031 -1.7254 -1.2918 36 1 3.4850 -2.1117 -2.8743 37 1 3.9784 -3.0013 -4.3885 38 1 4.7946 -4.1289 -6.3917 39 1 9.4077 -4.0487 -8.8900 40 1 7.7891 -1.0920 -3.8770 41 1 3.4984 -2.6527 0.0055 42 1 5.0413 -1.7695 0.1039 43 1 3.9903 0.0022 1.4318 44 1 3.6521 -1.5695 2.1987 45 1 3.0025 -0.6886 4.7766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948074269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:29 Heat of formation + Delta-G solvation = -5.437288 kcal Electronic energy + Delta-G solvation = -29479.539629 eV Core-core repulsion = 25271.935455 eV Total energy + Delta-G solvation = -4207.604175 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -43.76359 -40.19305 -38.90033 -38.09405 -37.33713 -34.98566 -34.69625 -32.46748 -31.55711 -31.17106 -30.15893 -29.08579 -26.40088 -25.15334 -24.28476 -24.02534 -22.50903 -22.03249 -21.34657 -20.28067 -19.61118 -19.34252 -18.58104 -18.09733 -17.70286 -16.61262 -16.28232 -15.89386 -15.24764 -15.09532 -14.85805 -14.58931 -14.39361 -14.21917 -13.97420 -13.82994 -13.60277 -13.34111 -13.18320 -12.97423 -12.77335 -12.64108 -11.99256 -11.61024 -11.44996 -11.22972 -11.10716 -11.02126 -10.93400 -10.89762 -10.65534 -10.34059 -10.16819 -10.05644 -9.96649 -9.74373 -9.40420 -9.34160 -8.84621 -8.62882 -8.41321 -6.64282 -5.76265 -3.20434 0.04986 0.74245 1.06344 1.76578 2.73394 2.93303 3.25449 3.38787 3.45023 3.45198 3.50918 3.90731 4.26519 4.47291 4.49477 4.59141 4.73234 4.83412 5.12865 5.25218 5.36435 5.42014 5.50711 5.56741 5.57230 5.75214 5.75782 5.79675 5.98138 6.00479 6.14510 6.22287 6.30620 6.35713 6.39253 6.41686 6.49627 6.63022 6.79186 6.86104 7.02104 7.07740 7.09100 7.38754 7.60024 7.71425 7.82625 8.26506 8.47652 9.23092 9.86700 10.43428 11.32254 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026013 B = 0.002011 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.120891 B =13918.339899 C =14198.805230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.171 3.829 3 H 0.027 0.973 4 C -0.134 4.134 5 C 0.150 3.850 6 H 0.084 0.916 7 N -0.715 5.715 8 C 0.557 3.443 9 O -0.531 6.531 10 C -0.112 4.112 11 C -0.077 4.077 12 C -0.076 4.076 13 C 0.072 3.928 14 N -0.526 5.526 15 C 0.457 3.543 16 O -0.413 6.413 17 O -0.196 6.196 18 C -0.009 4.009 19 C -0.017 4.017 20 C -0.147 4.147 21 C 0.174 3.826 22 N -0.587 5.587 23 C -0.251 4.251 24 H 0.070 0.930 25 C 0.002 3.998 26 N -0.903 5.903 27 Si 0.901 3.099 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.283 1.283 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.443 0.557 40 H 0.152 0.848 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.091 0.909 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.030 -6.351 -23.984 25.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.063 3.937 3 H 0.045 0.955 4 C -0.174 4.174 5 C 0.048 3.952 6 H 0.102 0.898 7 N -0.365 5.365 8 C 0.343 3.657 9 O -0.409 6.409 10 C -0.116 4.116 11 C -0.097 4.097 12 C -0.096 4.096 13 C -0.041 4.041 14 N -0.277 5.277 15 C 0.208 3.792 16 O -0.214 6.214 17 O -0.090 6.090 18 C -0.057 4.057 19 C -0.036 4.036 20 C -0.187 4.187 21 C 0.048 3.952 22 N -0.311 5.311 23 C -0.381 4.381 24 H 0.087 0.913 25 C -0.197 4.197 26 N -0.547 5.547 27 Si 0.731 3.269 28 H -0.211 1.211 29 H -0.217 1.217 30 H -0.209 1.209 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.230 0.770 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.303 0.697 40 H 0.170 0.830 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.109 0.891 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.885 -5.791 -23.493 25.448 hybrid contribution -0.378 -0.782 0.351 0.937 sum 7.507 -6.574 -23.142 25.202 Atomic orbital electron populations 1.21792 0.95740 1.01441 1.00316 1.20356 0.93081 0.93600 0.86621 0.95512 1.22395 0.93530 1.01729 0.99788 1.21114 0.94350 0.96846 0.82927 0.89808 1.46237 1.12682 1.48409 1.29198 1.17872 0.82447 0.81607 0.83741 1.90825 1.56208 1.37120 1.56737 1.19783 0.93556 1.00753 0.97500 1.20958 0.99942 0.94809 0.93968 1.19897 0.92026 1.00866 0.96765 1.19643 0.96010 0.96562 0.91876 1.71163 1.01942 1.29671 1.24961 1.22322 0.85921 0.86415 0.84536 1.84660 1.32299 1.66688 1.37787 1.84399 1.34798 1.56267 1.33537 1.19784 0.83139 1.04563 0.98255 1.19872 0.94917 0.97480 0.91370 1.22581 0.99836 0.99608 0.96722 1.20768 0.83188 0.97372 0.93914 1.44166 1.02997 1.64881 1.19032 1.19121 0.94809 1.37914 0.86230 0.91264 1.25101 0.97832 0.99738 0.97002 1.69996 1.23311 1.44405 1.16976 0.86395 0.79621 0.80127 0.80733 1.21109 1.21719 1.20939 0.92743 0.91877 0.94298 0.92586 0.91723 0.77039 0.83912 0.83826 0.69709 0.82988 0.92585 0.92795 0.96162 0.89085 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 7.94 37.16 0.30 -2.11 16 2 C 0.17 3.36 3.50 -67.60 -0.24 3.13 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -2.12 4.84 -26.61 -0.13 -2.25 16 5 C 0.15 2.50 2.42 -67.89 -0.16 2.33 16 6 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 7 N -0.72 -9.37 5.03 -54.81 -0.28 -9.65 16 8 C 0.56 7.96 7.72 -12.48 -0.10 7.87 16 9 O -0.53 -9.72 15.99 5.28 0.08 -9.63 16 10 C -0.11 -1.27 5.88 -104.92 -0.62 -1.89 16 11 C -0.08 -0.65 9.46 -39.58 -0.37 -1.03 16 12 C -0.08 -0.65 10.03 -39.68 -0.40 -1.05 16 13 C 0.07 0.76 7.23 -84.63 -0.61 0.15 16 14 N -0.53 -5.20 11.36 -12.72 -0.14 -5.35 16 15 C 0.46 4.11 9.54 52.32 0.50 4.61 16 16 O -0.41 -2.15 13.62 -40.29 -0.55 -2.70 16 17 O -0.20 -2.19 10.79 -20.52 -0.22 -2.41 16 18 C -0.01 -0.10 7.40 -38.75 -0.29 -0.38 16 19 C -0.02 -0.19 9.60 -39.13 -0.38 -0.57 16 20 C -0.15 -2.83 5.65 -26.61 -0.15 -2.98 16 21 C 0.17 4.12 5.29 -3.71 -0.02 4.10 16 22 N -0.59 -14.03 2.99 -164.78 -0.49 -14.52 16 23 C -0.25 -6.55 8.61 -15.06 -0.13 -6.68 16 24 H 0.07 1.75 6.20 -52.49 -0.33 1.42 16 25 C 0.00 0.05 4.96 -17.43 -0.09 -0.03 16 26 N -0.90 -25.92 11.14 55.49 0.62 -25.30 16 27 Si 0.90 21.34 29.58 -169.99 -5.03 16.31 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 31 H 0.05 0.97 7.40 -51.93 -0.38 0.58 16 32 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.39 3.86 6.60 -40.82 -0.27 3.59 16 37 H 0.14 0.82 6.36 -52.49 -0.33 0.49 16 38 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.44 -0.16 9.06 45.56 0.41 0.26 16 40 H 0.15 1.78 7.64 -52.49 -0.40 1.38 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.09 2.42 6.06 -51.93 -0.31 2.11 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -33.69 369.79 -8.24 -41.93 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -4.92 Total: 2.55 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -2.88 Total: 3.20 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.29 Total: -54.82 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.69 Total: -14.75 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.69 -8.24 -41.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948074269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.494 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds