Wall clock time and date at job start Sat Apr 11 2020 07:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.70207 * 2 1 4 4 C 1.52761 * 109.51275 * 239.87859 * 2 1 3 5 5 C 1.53038 * 109.38043 * 185.70595 * 4 2 1 6 6 H 1.08994 * 109.45303 * 301.22247 * 5 4 2 7 7 N 1.46499 * 109.45713 * 181.25863 * 5 4 2 8 8 C 1.34784 * 120.00249 * 154.93095 * 7 5 4 9 9 O 1.21584 * 119.99204 * 0.02562 * 8 7 5 10 10 C 1.47584 * 119.99960 * 180.02562 * 8 7 5 11 11 C 1.39557 * 120.22201 * 359.72076 * 10 8 7 12 12 C 1.38177 * 120.28870 * 179.73179 * 11 10 8 13 13 C 1.38028 * 120.59848 * 0.55828 * 12 11 10 14 14 C 1.39479 * 120.06286 * 359.70857 * 13 12 11 15 15 N 1.36218 * 133.65601 * 180.02562 * 14 13 12 16 16 C 1.30603 * 108.67505 * 180.02562 * 15 14 13 17 17 O 1.35188 * 124.94043 * 179.97438 * 16 15 14 18 18 O 1.34410 * 110.11302 * 359.97438 * 16 15 14 19 19 C 1.35008 * 108.21709 * 0.02562 * 18 16 15 20 20 C 1.53039 * 109.54172 * 61.24239 * 5 4 2 21 21 C 1.53192 * 109.30888 * 298.63464 * 20 5 4 22 22 N 1.46924 * 109.58321 * 120.34934 * 2 1 3 23 23 C 1.36937 * 120.63652 * 353.42102 * 22 2 1 24 24 H 1.07999 * 119.99246 * 30.53115 * 23 22 2 25 25 C 1.38810 * 120.00280 * 210.53604 * 23 22 2 26 26 N 1.31614 * 119.99755 * 197.75165 * 25 23 22 27 27 Si 1.86799 * 120.00038 * 17.75617 * 25 23 22 28 28 H 1.48500 * 109.47011 * 273.11833 * 27 25 23 29 29 H 1.48500 * 109.47463 * 33.11467 * 27 25 23 30 30 H 1.48498 * 109.47269 * 153.11822 * 27 25 23 31 31 H 1.08999 * 109.47745 * 299.64868 * 1 2 3 32 32 H 1.08999 * 109.47103 * 59.65370 * 1 2 3 33 33 H 1.09002 * 109.47048 * 179.65012 * 1 2 3 34 34 H 1.08997 * 109.56415 * 65.66782 * 4 2 1 35 35 H 1.09001 * 109.35959 * 305.61543 * 4 2 1 36 36 H 0.97004 * 120.00571 * 334.93450 * 7 5 4 37 37 H 1.08001 * 119.85475 * 0.02562 * 11 10 8 38 38 H 1.08005 * 119.70476 * 180.28385 * 12 11 10 39 39 H 1.07995 * 119.96634 * 179.73515 * 13 12 11 40 40 H 0.96704 * 114.00254 * 0.02562 * 17 16 15 41 41 H 1.08998 * 109.50163 * 178.68331 * 20 5 4 42 42 H 1.09000 * 109.52359 * 58.59584 * 20 5 4 43 43 H 1.09003 * 109.58543 * 294.84129 * 21 20 5 44 44 H 1.09000 * 109.70367 * 174.49237 * 21 20 5 45 45 H 0.97007 * 119.99907 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2454 5 6 3.5639 -0.8462 -1.1724 6 1 4.0055 0.1476 -1.0994 7 7 4.0579 -1.5122 -2.3801 8 6 5.3219 -1.3004 -2.7974 9 8 6.0521 -0.5569 -2.1712 10 6 5.8193 -1.9709 -4.0144 11 6 4.9867 -2.8297 -4.7334 12 6 5.4493 -3.4540 -5.8761 13 6 6.7412 -3.2471 -6.3158 14 6 7.5920 -2.3971 -5.6094 15 7 8.8833 -2.0006 -5.7850 16 6 9.2039 -1.1807 -4.8203 17 8 10.4112 -0.5897 -4.6756 18 8 8.1590 -1.0101 -3.9923 19 6 7.1307 -1.7546 -4.4515 20 6 3.9523 -1.6685 0.0584 21 6 3.4643 -0.9517 1.3212 22 7 2.0224 -0.6994 1.1946 23 6 1.1536 -1.1133 2.1687 24 1 0.1431 -1.3916 1.9081 25 6 1.5715 -1.1752 3.4909 26 7 0.8883 -1.8840 4.3645 27 14 3.1034 -0.2524 4.0304 28 1 4.2993 -1.1029 3.8032 29 1 3.2299 1.0002 3.2428 30 1 2.9988 0.0792 5.4741 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5192 -0.8869 33 1 -0.3633 -1.0277 -0.0063 34 1 1.7633 -0.1567 -2.1349 35 1 1.5964 -1.7170 -1.2935 36 1 3.4753 -2.1056 -2.8796 37 1 3.9750 -3.0035 -4.3978 38 1 4.7954 -4.1132 -6.4278 39 1 7.0934 -3.7435 -7.2078 40 1 11.0489 -0.8242 -5.3637 41 1 5.0363 -1.7759 0.0969 42 1 3.4909 -2.6543 -0.0017 43 1 3.9928 -0.0047 1.4311 44 1 3.6505 -1.5774 2.1941 45 1 1.1802 -1.9269 5.2886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948109237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:32 Heat of formation + Delta-G solvation = 1.149757 kcal Electronic energy + Delta-G solvation = -30114.549580 eV Core-core repulsion = 25907.231042 eV Total energy + Delta-G solvation = -4207.318539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -43.70363 -40.15626 -38.83126 -38.14402 -37.68554 -34.90035 -34.79657 -32.47219 -31.97198 -31.23131 -30.13422 -29.50543 -26.61571 -25.18225 -24.34135 -23.47077 -23.22520 -22.58051 -21.06923 -20.39394 -19.51154 -19.40652 -18.71733 -17.94832 -17.58872 -16.81890 -16.41034 -16.04386 -15.44048 -15.25772 -14.97340 -14.75221 -14.53060 -14.18093 -14.05692 -13.81312 -13.77247 -13.41370 -13.23931 -12.83945 -12.64082 -12.50134 -12.29524 -11.98061 -11.85285 -11.47276 -11.36227 -11.19317 -11.14977 -11.02622 -10.60895 -10.39890 -10.19307 -10.10237 -10.02079 -9.67186 -9.43278 -9.27223 -8.89492 -8.72579 -8.57608 -6.92665 -5.93150 -3.32994 0.04453 0.69443 1.20757 1.81387 2.72852 3.01563 3.07555 3.35759 3.39752 3.51625 3.55423 3.94754 4.22834 4.43917 4.46687 4.55515 4.76007 4.82671 4.88078 5.09218 5.13534 5.28480 5.37114 5.38672 5.50151 5.60400 5.70838 5.74761 5.79272 5.97572 5.98437 6.01299 6.08101 6.19953 6.24872 6.35433 6.39689 6.44576 6.49442 6.62522 6.69671 6.78700 6.95301 7.04683 7.17539 7.47822 8.00250 8.16223 8.36758 8.95287 9.74032 10.12044 11.22444 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017463 B = 0.002618 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.028888 B =10693.275118 C =11655.317688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.175 3.825 3 H 0.031 0.969 4 C -0.136 4.136 5 C 0.150 3.850 6 H 0.084 0.916 7 N -0.715 5.715 8 C 0.550 3.450 9 O -0.524 6.524 10 C -0.092 4.092 11 C -0.067 4.067 12 C -0.116 4.116 13 C -0.047 4.047 14 C 0.042 3.958 15 N -0.527 5.527 16 C 0.452 3.548 17 O -0.411 6.411 18 O -0.177 6.177 19 C 0.055 3.945 20 C -0.141 4.141 21 C 0.127 3.873 22 N -0.603 5.603 23 C -0.259 4.259 24 H 0.091 0.909 25 C 0.026 3.974 26 N -0.911 5.911 27 Si 0.882 3.118 28 H -0.286 1.286 29 H -0.272 1.272 30 H -0.304 1.304 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.396 0.604 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.440 0.560 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.026 0.974 44 H 0.078 0.922 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.167 -2.808 -25.137 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.068 3.932 3 H 0.049 0.951 4 C -0.175 4.175 5 C 0.047 3.953 6 H 0.102 0.898 7 N -0.366 5.366 8 C 0.336 3.664 9 O -0.401 6.401 10 C -0.096 4.096 11 C -0.086 4.086 12 C -0.135 4.135 13 C -0.067 4.067 14 C -0.069 4.069 15 N -0.278 5.278 16 C 0.203 3.797 17 O -0.212 6.212 18 O -0.069 6.069 19 C 0.004 3.996 20 C -0.181 4.181 21 C 0.001 3.999 22 N -0.327 5.327 23 C -0.387 4.387 24 H 0.109 0.891 25 C -0.173 4.173 26 N -0.554 5.554 27 Si 0.713 3.287 28 H -0.214 1.214 29 H -0.197 1.197 30 H -0.232 1.232 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.165 0.835 38 H 0.164 0.836 39 H 0.160 0.840 40 H 0.300 0.700 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.096 0.904 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 11.900 -2.109 -24.363 27.196 hybrid contribution 0.853 0.267 0.361 0.964 sum 12.753 -1.842 -24.002 27.242 Atomic orbital electron populations 1.21799 0.94903 1.01957 1.00631 1.20289 0.93796 0.93416 0.85695 0.95089 1.22321 0.93234 1.02197 0.99794 1.21056 0.94642 0.96727 0.82848 0.89750 1.46165 1.12688 1.48836 1.28930 1.18029 0.82522 0.81807 0.84015 1.90856 1.55880 1.36815 1.56501 1.18956 0.89622 1.02473 0.98554 1.21262 0.99198 0.93943 0.94215 1.21013 0.95298 1.00554 0.96657 1.20440 0.91828 0.95333 0.99083 1.19473 0.90708 1.01060 0.95671 1.71241 1.13992 1.18164 1.24403 1.22363 0.84687 0.88917 0.83772 1.84718 1.16551 1.65307 1.54617 1.84556 1.18406 1.57514 1.46411 1.19767 0.88833 0.95317 0.95689 1.22392 1.00146 0.99944 0.95618 1.21369 0.85164 0.97252 0.96094 1.44484 1.02015 1.65584 1.20655 1.18900 0.96306 1.38118 0.85402 0.89140 1.25344 0.97569 0.98638 0.95781 1.69799 1.41098 1.40665 1.03827 0.87001 0.83435 0.81586 0.76657 1.21413 1.19700 1.23234 0.91515 0.94077 0.92349 0.92049 0.91223 0.76864 0.83550 0.83561 0.83981 0.69979 0.92397 0.91501 0.95646 0.90443 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.95 37.16 0.30 -2.07 16 2 C 0.17 3.29 3.48 -67.82 -0.24 3.05 16 3 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.14 -2.04 4.81 -26.83 -0.13 -2.17 16 5 C 0.15 2.41 2.42 -67.89 -0.16 2.25 16 6 H 0.08 1.52 7.57 -51.93 -0.39 1.13 16 7 N -0.72 -9.24 5.03 -54.79 -0.28 -9.52 16 8 C 0.55 8.21 7.73 -12.44 -0.10 8.12 16 9 O -0.52 -10.15 15.79 -4.60 -0.07 -10.22 16 10 C -0.09 -1.11 5.88 -104.97 -0.62 -1.72 16 11 C -0.07 -0.52 9.53 -39.11 -0.37 -0.89 16 12 C -0.12 -0.71 10.00 -39.68 -0.40 -1.11 16 13 C -0.05 -0.37 10.09 -39.20 -0.40 -0.76 16 14 C 0.04 0.47 7.23 -84.71 -0.61 -0.14 16 15 N -0.53 -5.81 11.38 -12.81 -0.15 -5.96 16 16 C 0.45 5.09 9.54 52.24 0.50 5.59 16 17 O -0.41 -3.11 13.62 -40.54 -0.55 -3.66 16 18 O -0.18 -2.60 10.16 -24.65 -0.25 -2.85 16 19 C 0.06 0.74 6.98 -38.21 -0.27 0.47 16 20 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 21 C 0.13 2.83 4.20 -3.71 -0.02 2.82 16 22 N -0.60 -13.90 2.73 -165.03 -0.45 -14.35 16 23 C -0.26 -6.97 9.00 -15.06 -0.14 -7.10 16 24 H 0.09 2.55 6.45 -52.49 -0.34 2.21 16 25 C 0.03 0.73 5.26 -17.43 -0.09 0.64 16 26 N -0.91 -27.66 13.97 55.49 0.78 -26.89 16 27 Si 0.88 22.74 24.34 -169.99 -4.14 18.61 16 28 H -0.29 -7.19 6.42 56.52 0.36 -6.82 16 29 H -0.27 -6.98 6.90 56.52 0.39 -6.59 16 30 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 31 H 0.07 1.29 7.63 -51.93 -0.40 0.90 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.05 7.44 -51.93 -0.39 0.67 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.40 3.69 6.63 -40.82 -0.27 3.42 16 37 H 0.15 0.71 6.39 -52.49 -0.34 0.38 16 38 H 0.15 0.40 8.06 -52.48 -0.42 -0.02 16 39 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 40 H 0.44 0.62 9.06 45.56 0.41 1.04 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.03 0.58 7.16 -51.93 -0.37 0.21 16 44 H 0.08 1.89 4.60 -51.93 -0.24 1.65 16 45 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 363.40 15.07 5.48 5.48 Total: -1.00 -36.78 363.40 -7.41 -44.18 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.89 Total: 0.97 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -2.89 Total: 4.21 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.10 Total: -56.71 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.88 Total: -16.73 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.14 Total: 18.61 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.78 -7.41 -44.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948109237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.331 kcal (2) G-P(sol) polarization free energy of solvation -36.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds