Wall clock time and date at job start Sat Apr 11 2020 07:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.70207 * 2 1 4 4 C 1.52761 * 109.51275 * 239.87859 * 2 1 3 5 5 C 1.53038 * 109.38043 * 185.70595 * 4 2 1 6 6 H 1.08994 * 109.45303 * 301.22247 * 5 4 2 7 7 N 1.46499 * 109.45713 * 181.25863 * 5 4 2 8 8 C 1.34784 * 120.00249 * 154.93095 * 7 5 4 9 9 O 1.21584 * 119.99204 * 0.02562 * 8 7 5 10 10 C 1.47584 * 119.99960 * 180.02562 * 8 7 5 11 11 C 1.39557 * 120.22201 * 359.72076 * 10 8 7 12 12 C 1.38177 * 120.28870 * 179.73179 * 11 10 8 13 13 C 1.38028 * 120.59848 * 0.55828 * 12 11 10 14 14 C 1.39479 * 120.06286 * 359.70857 * 13 12 11 15 15 N 1.36218 * 133.65601 * 180.02562 * 14 13 12 16 16 C 1.30603 * 108.67505 * 180.02562 * 15 14 13 17 17 O 1.35188 * 124.94043 * 179.97438 * 16 15 14 18 18 O 1.34410 * 110.11302 * 359.97438 * 16 15 14 19 19 C 1.35008 * 108.21709 * 0.02562 * 18 16 15 20 20 C 1.53039 * 109.54172 * 61.24239 * 5 4 2 21 21 C 1.53192 * 109.30888 * 298.63464 * 20 5 4 22 22 N 1.46924 * 109.58321 * 120.34934 * 2 1 3 23 23 C 1.36937 * 120.63652 * 353.42102 * 22 2 1 24 24 H 1.07999 * 119.99246 * 30.53115 * 23 22 2 25 25 C 1.38810 * 120.00280 * 210.53604 * 23 22 2 26 26 N 1.31614 * 119.99755 * 197.75165 * 25 23 22 27 27 Si 1.86799 * 120.00038 * 17.75617 * 25 23 22 28 28 H 1.48500 * 109.47011 * 273.11833 * 27 25 23 29 29 H 1.48500 * 109.47463 * 33.11467 * 27 25 23 30 30 H 1.48498 * 109.47269 * 153.11822 * 27 25 23 31 31 H 1.08999 * 109.47745 * 299.64868 * 1 2 3 32 32 H 1.08999 * 109.47103 * 59.65370 * 1 2 3 33 33 H 1.09002 * 109.47048 * 179.65012 * 1 2 3 34 34 H 1.08997 * 109.56415 * 65.66782 * 4 2 1 35 35 H 1.09001 * 109.35959 * 305.61543 * 4 2 1 36 36 H 0.97004 * 120.00571 * 334.93450 * 7 5 4 37 37 H 1.08001 * 119.85475 * 0.02562 * 11 10 8 38 38 H 1.08005 * 119.70476 * 180.28385 * 12 11 10 39 39 H 1.07995 * 119.96634 * 179.73515 * 13 12 11 40 40 H 0.96704 * 114.00254 * 0.02562 * 17 16 15 41 41 H 1.08998 * 109.50163 * 178.68331 * 20 5 4 42 42 H 1.09000 * 109.52359 * 58.59584 * 20 5 4 43 43 H 1.09003 * 109.58543 * 294.84129 * 21 20 5 44 44 H 1.09000 * 109.70367 * 174.49237 * 21 20 5 45 45 H 0.97007 * 119.99907 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2454 5 6 3.5639 -0.8462 -1.1724 6 1 4.0055 0.1476 -1.0994 7 7 4.0579 -1.5122 -2.3801 8 6 5.3219 -1.3004 -2.7974 9 8 6.0521 -0.5569 -2.1712 10 6 5.8193 -1.9709 -4.0144 11 6 4.9867 -2.8297 -4.7334 12 6 5.4493 -3.4540 -5.8761 13 6 6.7412 -3.2471 -6.3158 14 6 7.5920 -2.3971 -5.6094 15 7 8.8833 -2.0006 -5.7850 16 6 9.2039 -1.1807 -4.8203 17 8 10.4112 -0.5897 -4.6756 18 8 8.1590 -1.0101 -3.9923 19 6 7.1307 -1.7546 -4.4515 20 6 3.9523 -1.6685 0.0584 21 6 3.4643 -0.9517 1.3212 22 7 2.0224 -0.6994 1.1946 23 6 1.1536 -1.1133 2.1687 24 1 0.1431 -1.3916 1.9081 25 6 1.5715 -1.1752 3.4909 26 7 0.8883 -1.8840 4.3645 27 14 3.1034 -0.2524 4.0304 28 1 4.2993 -1.1029 3.8032 29 1 3.2299 1.0002 3.2428 30 1 2.9988 0.0792 5.4741 31 1 -0.3634 0.5083 0.8931 32 1 -0.3633 0.5192 -0.8869 33 1 -0.3633 -1.0277 -0.0063 34 1 1.7633 -0.1567 -2.1349 35 1 1.5964 -1.7170 -1.2935 36 1 3.4753 -2.1056 -2.8796 37 1 3.9750 -3.0035 -4.3978 38 1 4.7954 -4.1132 -6.4278 39 1 7.0934 -3.7435 -7.2078 40 1 11.0489 -0.8242 -5.3637 41 1 5.0363 -1.7759 0.0969 42 1 3.4909 -2.6543 -0.0017 43 1 3.9928 -0.0047 1.4311 44 1 3.6505 -1.5774 2.1941 45 1 1.1802 -1.9269 5.2886 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948109237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:32 Heat of formation + Delta-G solvation = -30.804015 kcal Electronic energy + Delta-G solvation = -30115.935200 eV Core-core repulsion = 25907.231042 eV Total energy + Delta-G solvation = -4208.704158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.49441 -41.28847 -39.76751 -39.23771 -38.59706 -36.24817 -35.68493 -34.27944 -33.39753 -32.48698 -31.37601 -30.33876 -28.10530 -26.66134 -25.44458 -24.47559 -24.20488 -23.93854 -22.32475 -21.63117 -20.99110 -20.10377 -19.54694 -18.89474 -18.42713 -18.37517 -17.63233 -17.46568 -16.74448 -16.37011 -16.14037 -16.03804 -15.59158 -15.39313 -15.23682 -14.96582 -14.87942 -14.66992 -14.57542 -14.32845 -13.90292 -13.59336 -13.51980 -13.23517 -12.97561 -12.89037 -12.72102 -12.65991 -12.25978 -12.17607 -12.06355 -11.97751 -11.87711 -11.77322 -11.53575 -11.41158 -11.02437 -10.71510 -10.20628 -9.90380 -9.43739 -8.88505 -8.14111 -5.47835 -0.66724 -0.03206 0.54551 1.03748 1.26927 1.37876 1.45114 1.81148 1.95102 2.37469 2.41296 2.60918 3.06276 3.21724 3.29810 3.53196 3.70436 3.78960 3.87578 3.92391 4.14031 4.20349 4.21807 4.22651 4.43304 4.52957 4.57176 4.62478 4.68581 4.73315 4.82104 4.86302 4.92805 5.01101 5.06152 5.07577 5.13476 5.17870 5.20488 5.40703 5.47901 5.49301 5.59001 5.89057 5.93745 6.21844 6.46394 6.51147 6.94115 7.12401 7.65152 8.07344 9.05284 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017463 B = 0.002618 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.028888 B =10693.275118 C =11655.317688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.162 3.838 3 H 0.030 0.970 4 C -0.120 4.120 5 C 0.159 3.841 6 H 0.063 0.937 7 N -0.696 5.696 8 C 0.549 3.451 9 O -0.580 6.580 10 C -0.122 4.122 11 C -0.046 4.046 12 C -0.099 4.099 13 C -0.038 4.038 14 C 0.022 3.978 15 N -0.526 5.526 16 C 0.442 3.558 17 O -0.410 6.410 18 O -0.216 6.216 19 C 0.020 3.980 20 C -0.129 4.129 21 C 0.124 3.876 22 N -0.615 5.615 23 C -0.231 4.231 24 H 0.076 0.924 25 C -0.030 4.030 26 N -0.956 5.956 27 Si 0.930 3.070 28 H -0.281 1.281 29 H -0.273 1.273 30 H -0.312 1.312 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.418 0.582 37 H 0.182 0.818 38 H 0.196 0.804 39 H 0.171 0.829 40 H 0.461 0.539 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.017 0.983 44 H 0.052 0.948 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.426 -4.151 -29.458 31.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.057 3.943 3 H 0.048 0.952 4 C -0.159 4.159 5 C 0.055 3.945 6 H 0.081 0.919 7 N -0.348 5.348 8 C 0.337 3.663 9 O -0.461 6.461 10 C -0.126 4.126 11 C -0.064 4.064 12 C -0.117 4.117 13 C -0.057 4.057 14 C -0.089 4.089 15 N -0.277 5.277 16 C 0.193 3.807 17 O -0.215 6.215 18 O -0.110 6.110 19 C -0.031 4.031 20 C -0.170 4.170 21 C -0.002 4.002 22 N -0.340 5.340 23 C -0.360 4.360 24 H 0.093 0.907 25 C -0.224 4.224 26 N -0.603 5.603 27 Si 0.761 3.239 28 H -0.209 1.209 29 H -0.198 1.198 30 H -0.241 1.241 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.257 0.743 37 H 0.199 0.801 38 H 0.213 0.787 39 H 0.189 0.811 40 H 0.326 0.674 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.171 -3.466 -28.778 31.064 hybrid contribution 1.069 0.654 1.531 1.979 sum 12.240 -2.811 -27.246 30.001 Atomic orbital electron populations 1.21727 0.93736 1.01706 1.01379 1.20627 0.94858 0.93450 0.85388 0.95206 1.22143 0.91820 1.02915 0.99008 1.20733 0.95416 0.95401 0.82975 0.91887 1.45811 1.12531 1.48679 1.27827 1.18534 0.82286 0.80969 0.84465 1.90826 1.57376 1.39423 1.58475 1.18940 0.90133 1.04942 0.98630 1.21761 0.99768 0.91337 0.93557 1.21576 0.94945 0.99600 0.95623 1.20992 0.91935 0.93609 0.99195 1.19960 0.91047 1.02108 0.95790 1.71225 1.14252 1.18124 1.24141 1.22641 0.85099 0.89400 0.83588 1.84710 1.15892 1.65015 1.55895 1.84478 1.19767 1.58696 1.48055 1.20227 0.89278 0.96454 0.97105 1.22215 0.99505 1.00089 0.95163 1.21282 0.84952 0.96772 0.97159 1.44662 1.01801 1.66269 1.21251 1.18933 0.96013 1.35165 0.85910 0.90669 1.25829 0.99988 1.00229 0.96371 1.69895 1.43178 1.43171 1.04019 0.86209 0.81462 0.80573 0.75626 1.20859 1.19787 1.24072 0.94282 0.89819 0.93081 0.88208 0.90051 0.74286 0.80128 0.78728 0.81135 0.67390 0.93194 0.90894 0.96503 0.92976 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 7.95 71.98 0.57 -3.61 16 2 C 0.16 5.78 3.48 44.83 0.16 5.93 16 3 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 4 C -0.12 -3.16 4.81 30.53 0.15 -3.02 16 5 C 0.16 4.81 2.42 45.02 0.11 4.92 16 6 H 0.06 2.23 7.57 -2.39 -0.02 2.21 16 7 N -0.70 -16.16 5.03 -445.53 -2.24 -18.40 16 8 C 0.55 15.97 7.73 86.71 0.67 16.64 16 9 O -0.58 -23.24 15.79 5.48 0.09 -23.16 16 10 C -0.12 -2.75 5.88 -20.09 -0.12 -2.87 16 11 C -0.05 -0.50 9.53 22.57 0.22 -0.28 16 12 C -0.10 -0.65 10.00 22.21 0.22 -0.43 16 13 C -0.04 -0.44 10.09 22.52 0.23 -0.21 16 14 C 0.02 0.46 7.23 39.24 0.28 0.74 16 15 N -0.53 -11.33 11.38 -422.78 -4.81 -16.15 16 16 C 0.44 10.29 9.54 130.43 1.24 11.54 16 17 O -0.41 -6.38 13.62 -62.42 -0.85 -7.23 16 18 O -0.22 -6.73 10.16 16.28 0.17 -6.56 16 19 C 0.02 0.53 6.98 23.16 0.16 0.69 16 20 C -0.13 -4.71 5.65 30.67 0.17 -4.54 16 21 C 0.12 5.55 4.20 86.36 0.36 5.92 16 22 N -0.61 -28.09 2.73 -676.03 -1.85 -29.94 16 23 C -0.23 -12.52 9.00 84.03 0.76 -11.77 16 24 H 0.08 4.29 6.45 -2.91 -0.02 4.27 16 25 C -0.03 -1.73 5.26 84.86 0.45 -1.28 16 26 N -0.96 -59.75 13.97 21.65 0.30 -59.44 16 27 Si 0.93 48.44 24.34 68.60 1.67 50.11 16 28 H -0.28 -14.21 6.42 99.48 0.64 -13.57 16 29 H -0.27 -14.00 6.90 99.48 0.69 -13.32 16 30 H -0.31 -16.47 7.11 99.48 0.71 -15.76 16 31 H 0.04 1.47 7.63 -2.39 -0.02 1.45 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 1.73 7.44 -2.39 -0.02 1.72 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.42 5.86 6.63 -92.71 -0.61 5.25 16 37 H 0.18 0.61 6.39 -2.91 -0.02 0.59 16 38 H 0.20 -0.49 8.06 -2.91 -0.02 -0.52 16 39 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.46 1.21 9.06 -74.05 -0.67 0.54 16 41 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.02 0.79 7.16 -2.39 -0.02 0.77 16 44 H 0.05 2.58 4.60 -2.39 -0.01 2.57 16 45 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -86.77 363.40 -2.20 -88.98 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -0.31 Total: 3.43 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: 5.63 Total: 18.37 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -8.60 Total: -123.93 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.60 Total: -36.95 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 1.67 Total: 50.11 kcal Total: -86.77 -2.20 -88.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948109237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.171 kcal (2) G-P(sol) polarization free energy of solvation -86.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds