Wall clock time and date at job start Sat Apr 11 2020 07:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47453 * 2 1 4 4 N 1.46498 * 109.47609 * 120.00273 * 2 1 3 5 5 N 1.39748 * 125.20627 * 300.02467 * 4 2 1 6 6 C 1.30276 * 109.79325 * 179.97438 * 5 4 2 7 7 C 1.46175 * 107.23447 * 0.02562 * 6 5 4 8 8 C 1.40480 * 133.09456 * 179.97438 * 7 6 5 9 9 C 1.39186 * 118.89002 * 179.97438 * 8 7 6 10 10 C 1.46442 * 120.58332 * 179.97438 * 9 8 7 11 11 C 1.35463 * 119.99911 * 114.16707 * 10 9 8 12 12 C 1.41411 * 120.00195 * 353.28553 * 11 10 9 13 13 O 1.21693 * 119.99661 * 354.50459 * 12 11 10 14 14 O 1.34973 * 119.99919 * 174.49858 * 12 11 10 15 15 C 1.42903 * 116.99704 * 179.97438 * 14 12 11 16 16 H 1.08996 * 109.46683 * 30.00885 * 15 14 12 17 17 C 1.52996 * 109.47477 * 270.00238 * 15 14 12 18 18 C 1.50704 * 109.46808 * 150.00578 * 15 14 12 19 19 H 1.07999 * 120.00080 * 32.53260 * 18 15 14 20 20 C 1.37872 * 119.99921 * 212.54015 * 18 15 14 21 21 N 1.31513 * 120.00238 * 178.22146 * 20 18 15 22 22 Si 1.86803 * 119.99988 * 358.21929 * 20 18 15 23 23 H 1.48500 * 109.47076 * 86.02447 * 22 20 18 24 24 H 1.48501 * 109.47279 * 206.02604 * 22 20 18 25 25 H 1.48495 * 109.47264 * 326.02559 * 22 20 18 26 26 C 1.46648 * 118.83401 * 0.02562 * 9 8 7 27 27 O 1.21819 * 119.99599 * 179.97438 * 26 9 8 28 28 N 1.34621 * 120.00504 * 359.97438 * 26 9 8 29 29 H 0.97004 * 119.46187 * 180.02562 * 28 26 9 30 30 C 1.35023 * 125.21351 * 119.71293 * 4 2 1 31 31 H 1.08994 * 109.47537 * 59.99655 * 1 2 3 32 32 H 1.09006 * 109.46538 * 299.99920 * 1 2 3 33 33 H 1.08996 * 109.47564 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47254 * 239.99961 * 2 1 3 35 35 H 1.08994 * 109.46847 * 60.00347 * 3 2 1 36 36 H 1.08998 * 109.47028 * 180.02562 * 3 2 1 37 37 H 1.08997 * 109.46922 * 300.00140 * 3 2 1 38 38 H 1.08005 * 126.38287 * 180.02562 * 6 5 4 39 39 H 1.07997 * 120.55490 * 0.02562 * 8 7 6 40 40 H 1.08001 * 120.00584 * 294.16970 * 10 9 8 41 41 H 1.08004 * 120.00133 * 173.28700 * 11 10 9 42 42 H 1.08998 * 109.47053 * 176.15861 * 17 15 14 43 43 H 1.08999 * 109.47330 * 296.16557 * 17 15 14 44 44 H 1.09002 * 109.46755 * 56.15718 * 17 15 14 45 45 H 0.96996 * 120.00005 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 7 1.7483 -0.3096 2.5132 6 6 2.3300 -1.1327 3.3387 7 6 3.0349 -2.1280 2.5330 8 6 3.8241 -3.2432 2.8599 9 6 4.3657 -4.0086 1.8312 10 6 5.1943 -5.1785 2.1298 11 6 4.7606 -6.4182 1.7981 12 6 3.4514 -6.5981 1.2947 13 8 2.6810 -5.6570 1.2530 14 8 3.0565 -7.8134 0.8603 15 6 1.7205 -7.9228 0.3651 16 1 1.4150 -6.9709 -0.0691 17 6 0.7784 -8.2848 1.5150 18 6 1.6621 -8.9978 -0.6895 19 1 2.3090 -9.8597 -0.6184 20 6 0.7829 -8.8809 -1.7450 21 7 0.7564 -9.8014 -2.6838 22 14 -0.3708 -7.4148 -1.8417 23 1 0.3224 -6.2825 -2.5071 24 1 -1.5774 -7.7852 -2.6241 25 1 -0.7744 -7.0113 -0.4708 26 6 4.0928 -3.6222 0.4432 27 8 4.5565 -4.2768 -0.4736 28 7 3.3298 -2.5442 0.1820 29 1 3.1541 -2.2960 -0.7391 30 6 2.7935 -1.7962 1.1948 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 0.5139 0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.1300 1.4424 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 2.2974 -1.0880 4.4173 39 1 4.0069 -3.5028 3.8922 40 1 6.1513 -5.0530 2.6145 41 1 5.4146 -7.2693 1.9182 42 1 -0.2490 -8.3012 1.1514 43 1 1.0418 -9.2680 1.9048 44 1 0.8714 -7.5428 2.3081 45 1 0.1376 -9.7194 -3.4263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341786034.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:03 Heat of formation + Delta-G solvation = -31.543177 kcal Electronic energy + Delta-G solvation = -30746.983603 eV Core-core repulsion = 26538.247392 eV Total energy + Delta-G solvation = -4208.736211 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.95343 -41.49501 -40.59466 -37.95554 -37.23107 -36.65511 -35.52380 -35.17343 -33.19307 -32.40853 -31.20686 -29.44036 -28.32135 -27.48796 -26.01117 -24.98743 -23.99938 -23.68983 -22.37030 -21.55824 -20.61703 -19.51792 -19.28568 -18.87625 -18.49925 -17.98632 -17.26266 -17.03295 -16.70151 -16.43687 -16.22835 -15.85659 -15.66859 -15.22648 -15.01062 -14.92524 -14.85968 -14.39768 -14.34722 -14.06825 -13.67959 -13.58252 -13.42109 -13.22517 -13.14722 -13.00186 -12.94137 -12.57209 -12.50349 -12.49471 -12.45997 -12.00986 -11.86614 -11.69784 -11.44933 -11.42456 -11.24837 -10.98572 -10.87759 -10.46945 -10.02124 -8.60078 -8.51092 -6.59454 -0.25444 0.20376 0.52509 0.76203 1.15889 1.17826 1.29856 1.52468 1.85384 2.13663 2.18160 2.34402 2.55326 2.90395 3.19095 3.44106 3.53108 3.71154 3.79089 3.88499 3.91288 4.09038 4.16992 4.23982 4.42635 4.54475 4.58841 4.60565 4.62953 4.63537 4.69968 4.74544 4.79928 4.83730 5.05376 5.08420 5.12552 5.21107 5.29657 5.30448 5.33990 5.39680 5.50623 5.56945 5.73331 5.88985 6.18357 6.47583 6.47870 6.86541 7.00230 7.14387 8.65035 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011141 B = 0.003837 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2512.673823 B = 7294.805362 C = 8679.318959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.139 3.861 3 C -0.150 4.150 4 N -0.379 5.379 5 N -0.280 5.280 6 C 0.129 3.871 7 C -0.281 4.281 8 C 0.072 3.928 9 C -0.229 4.229 10 C 0.048 3.952 11 C -0.214 4.214 12 C 0.478 3.522 13 O -0.542 6.542 14 O -0.360 6.360 15 C 0.188 3.812 16 H 0.023 0.977 17 C -0.146 4.146 18 C -0.533 4.533 19 H 0.046 0.954 20 C 0.033 3.967 21 N -0.925 5.925 22 Si 0.930 3.070 23 H -0.281 1.281 24 H -0.260 1.260 25 H -0.247 1.247 26 C 0.561 3.439 27 O -0.579 6.579 28 N -0.607 5.607 29 H 0.410 0.590 30 C 0.335 3.665 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.041 0.959 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.247 0.753 39 H 0.185 0.815 40 H 0.199 0.801 41 H 0.165 0.835 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 26.459 14.664 30.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 C -0.207 4.207 4 N -0.166 5.166 5 N -0.094 5.094 6 C -0.065 4.065 7 C -0.293 4.293 8 C 0.051 3.949 9 C -0.234 4.234 10 C 0.030 3.970 11 C -0.233 4.233 12 C 0.329 3.671 13 O -0.437 6.437 14 O -0.277 6.277 15 C 0.133 3.867 16 H 0.040 0.960 17 C -0.204 4.204 18 C -0.571 4.571 19 H 0.065 0.935 20 C -0.167 4.167 21 N -0.564 5.564 22 Si 0.753 3.247 23 H -0.207 1.207 24 H -0.185 1.185 25 H -0.170 1.170 26 C 0.360 3.640 27 O -0.461 6.461 28 N -0.247 5.247 29 H 0.248 0.752 30 C 0.106 3.894 31 H 0.120 0.880 32 H 0.091 0.909 33 H 0.060 0.940 34 H 0.117 0.883 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.263 0.737 39 H 0.202 0.798 40 H 0.216 0.784 41 H 0.182 0.818 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.862 27.277 13.807 30.815 hybrid contribution -0.426 -0.681 -1.567 1.761 sum 3.436 26.596 12.240 29.478 Atomic orbital electron populations 1.22117 0.92278 1.02288 1.04781 1.21719 0.96645 0.95273 0.82491 1.22069 1.01346 0.92660 1.04662 1.48693 1.40804 1.20159 1.06991 1.76890 1.23395 1.23666 0.85493 1.25763 0.90992 0.88408 1.01348 1.19429 1.15114 1.05187 0.89597 1.21270 0.86504 0.87132 1.00025 1.20468 1.10543 1.02001 0.90392 1.22517 0.97545 0.87890 0.89092 1.21770 0.93494 1.01107 1.06945 1.20909 0.90659 0.80734 0.74846 1.90731 1.57129 1.41562 1.54242 1.86309 1.35214 1.33791 1.72366 1.20165 0.77788 0.95586 0.93121 0.95953 1.22176 0.99403 1.01321 0.97457 1.21017 1.22655 1.05593 1.07834 0.93540 1.25636 0.98379 0.98897 0.93815 1.69966 1.38243 1.36274 1.11868 0.86037 0.79329 0.79403 0.79956 1.20711 1.18477 1.17044 1.18433 0.76846 0.77730 0.91012 1.90921 1.54304 1.52276 1.48593 1.42657 1.46590 1.26347 1.09156 0.75211 1.18622 0.92304 0.87997 0.90446 0.88037 0.90922 0.94013 0.88309 0.91075 0.92521 0.88205 0.73674 0.79779 0.78376 0.81791 0.92052 0.91849 0.93349 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 9.43 71.98 0.68 -1.57 16 2 C 0.14 2.10 3.65 44.99 0.16 2.27 16 3 C -0.15 -1.61 9.43 71.98 0.68 -0.93 16 4 N -0.38 -7.65 3.26 -323.59 -1.06 -8.70 16 5 N -0.28 -5.21 12.21 -52.89 -0.65 -5.86 16 6 C 0.13 1.90 12.33 86.99 1.07 2.97 16 7 C -0.28 -5.86 6.32 -20.25 -0.13 -5.99 16 8 C 0.07 1.45 9.94 23.04 0.23 1.68 16 9 C -0.23 -6.41 3.72 -18.72 -0.07 -6.48 16 10 C 0.05 1.16 9.42 23.77 0.22 1.39 16 11 C -0.21 -6.87 9.81 22.41 0.22 -6.65 16 12 C 0.48 21.20 7.18 68.60 0.49 21.69 16 13 O -0.54 -25.27 12.05 21.54 0.26 -25.01 16 14 O -0.36 -18.61 9.73 -58.90 -0.57 -19.19 16 15 C 0.19 10.31 2.08 29.85 0.06 10.37 16 16 H 0.02 1.30 4.70 -2.39 -0.01 1.29 16 17 C -0.15 -6.82 9.36 71.98 0.67 -6.14 16 18 C -0.53 -33.43 9.24 25.60 0.24 -33.19 16 19 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 20 C 0.03 2.04 5.47 84.65 0.46 2.50 16 21 N -0.93 -59.12 13.96 21.45 0.30 -58.82 16 22 Si 0.93 47.27 26.40 68.60 1.81 49.08 16 23 H -0.28 -14.53 7.11 99.48 0.71 -13.82 16 24 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 25 H -0.25 -11.89 6.16 99.48 0.61 -11.28 16 26 C 0.56 19.81 6.13 86.46 0.53 20.34 16 27 O -0.58 -25.75 16.96 -2.46 -0.04 -25.79 16 28 N -0.61 -17.49 5.27 -311.47 -1.64 -19.13 16 29 H 0.41 10.59 8.13 -92.71 -0.75 9.84 16 30 C 0.33 8.16 7.89 133.18 1.05 9.21 16 31 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 1.36 7.30 -2.39 -0.02 1.35 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.25 1.08 8.06 -2.91 -0.02 1.06 16 39 H 0.19 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.16 4.33 8.06 -2.91 -0.02 4.31 16 42 H 0.06 2.79 6.85 -2.39 -0.02 2.78 16 43 H 0.06 2.83 8.14 -2.39 -0.02 2.81 16 44 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.28 16.19 8.31 -92.71 -0.77 15.42 16 Total: -1.00 -90.50 382.34 5.17 -85.33 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.18 Total: 16.63 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 6.58 Total: 11.46 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -3.04 Total: -92.51 kcal Atomic # 8 Polarization: -69.63 SS G_CDS: -0.36 Total: -69.99 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.81 Total: 49.08 kcal Total: -90.50 5.17 -85.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341786034.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.783 kcal (2) G-P(sol) polarization free energy of solvation -90.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds