Wall clock time and date at job start Sat Apr 11 2020 07:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46504 * 109.46503 * 2 1 4 4 C 1.46503 * 119.99972 * 269.99624 * 3 2 1 5 5 C 1.50699 * 109.46935 * 270.00552 * 4 3 2 6 6 H 1.07999 * 120.00069 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99419 * 180.02562 * 5 4 3 8 8 N 1.31504 * 120.00301 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99588 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47236 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46911 * 119.99837 * 9 7 5 12 12 H 1.48499 * 109.47173 * 239.99450 * 9 7 5 13 13 C 1.34773 * 120.00010 * 90.00348 * 3 2 1 14 14 O 1.21593 * 120.00351 * 179.97438 * 13 3 2 15 15 N 1.34775 * 120.00307 * 359.97438 * 13 3 2 16 16 C 1.39949 * 120.00376 * 184.50597 * 15 13 3 17 17 C 1.38937 * 120.03476 * 144.37695 * 16 15 13 18 18 C 1.38137 * 120.05699 * 180.28544 * 17 16 15 19 19 C 1.38189 * 120.13601 * 359.76258 * 18 17 16 20 20 C 1.38852 * 120.07105 * 359.97438 * 19 18 17 21 21 N 1.40211 * 120.02612 * 180.02562 * 20 19 18 22 22 C 1.33873 * 122.75871 * 112.41351 * 21 20 19 23 23 O 1.21226 * 125.40089 * 359.97341 * 22 21 20 24 24 C 1.51322 * 109.20502 * 179.83989 * 22 21 20 25 25 C 1.54235 * 103.55028 * 0.38611 * 24 22 21 26 26 C 1.33873 * 122.76213 * 292.69575 * 21 20 19 27 27 O 1.21232 * 125.39594 * 0.03274 * 26 21 20 28 28 C 1.38718 * 119.94487 * 0.02562 * 20 19 18 29 29 H 1.09004 * 109.46561 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47240 * 299.99479 * 1 2 3 31 31 H 1.08990 * 109.47214 * 60.00491 * 1 2 3 32 32 H 1.08990 * 109.47368 * 240.00244 * 2 1 3 33 33 H 1.08998 * 109.47039 * 119.99229 * 2 1 3 34 34 H 1.09003 * 109.46798 * 30.00422 * 4 3 2 35 35 H 1.08998 * 109.47149 * 150.00633 * 4 3 2 36 36 H 0.97002 * 120.00420 * 179.97438 * 8 7 5 37 37 H 0.97002 * 119.99643 * 4.51703 * 15 13 3 38 38 H 1.07992 * 119.97168 * 0.02562 * 17 16 15 39 39 H 1.08001 * 119.93016 * 179.74568 * 18 17 16 40 40 H 1.08001 * 119.96354 * 179.97438 * 19 18 17 41 41 H 1.08990 * 110.79527 * 241.77901 * 24 22 21 42 42 H 1.08994 * 110.55042 * 118.87135 * 24 22 21 43 43 H 1.09000 * 110.60101 * 241.25795 * 25 24 22 44 44 H 1.09004 * 110.73614 * 118.36295 * 25 24 22 45 45 H 1.08001 * 120.07330 * 179.97438 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0957 7 6 4.1492 2.3907 -2.8775 8 7 3.3493 3.1266 -3.6175 9 14 5.9137 2.0977 -3.4163 10 1 6.6014 1.2426 -2.4158 11 1 5.9217 1.4192 -4.7372 12 1 6.6209 3.3991 -3.5241 13 6 2.2429 2.0166 1.1672 14 8 2.6485 3.1629 1.1672 15 7 2.0179 1.3815 2.3344 16 6 2.1603 2.0699 3.5445 17 6 1.3109 1.7902 4.6078 18 6 1.4472 2.4736 5.8005 19 6 2.4313 3.4335 5.9416 20 6 3.2867 3.7135 4.8843 21 7 4.2852 4.6872 5.0286 22 6 5.5904 4.3899 5.0418 23 8 6.0582 3.2767 4.9344 24 6 6.3896 5.6640 5.2086 25 6 5.3078 6.7596 5.3005 26 6 4.0116 5.9900 5.1701 27 8 2.9012 6.4761 5.1912 28 6 3.1526 3.0291 3.6852 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.8934 -0.5137 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.5816 1.6877 -2.0284 35 1 2.0954 3.1411 -1.1384 36 1 3.6755 3.5178 -4.4431 37 1 1.7574 0.4471 2.3357 38 1 0.5406 1.0409 4.5004 39 1 0.7831 2.2575 6.6244 40 1 2.5351 3.9664 6.8752 41 1 7.0338 5.8324 4.3458 42 1 6.9787 5.6289 6.1249 43 1 5.4142 7.4731 4.4833 44 1 5.3561 7.2699 6.2624 45 1 3.8166 3.2456 2.8613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347876163.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:16 Heat of formation + Delta-G solvation = -71.962506 kcal Electronic energy + Delta-G solvation = -30389.736519 eV Core-core repulsion = 26179.247595 eV Total energy + Delta-G solvation = -4210.488924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.24308 -41.73836 -39.74838 -39.73705 -37.24892 -37.01806 -36.04624 -34.86779 -34.14875 -31.69183 -31.19914 -30.40368 -28.76716 -27.20367 -25.35971 -24.56025 -24.43622 -23.64436 -23.07052 -21.05086 -20.92694 -19.46500 -18.87299 -18.54968 -18.12036 -17.61949 -17.43771 -17.39516 -16.78410 -16.59017 -16.15726 -15.87080 -15.45542 -15.37466 -15.29954 -15.02091 -14.78060 -14.70911 -14.52092 -14.38382 -13.84854 -13.75575 -13.69148 -13.33566 -13.11907 -13.02008 -12.87121 -12.74614 -12.56570 -12.25690 -12.15659 -12.02933 -11.86640 -11.75010 -11.64364 -11.22509 -11.19740 -10.96845 -10.68028 -9.89124 -9.66379 -9.14698 -8.25538 -6.40592 0.03174 0.25067 0.39931 1.32574 1.34869 1.37491 1.46767 1.63147 1.65251 2.06455 2.34976 2.64749 2.92575 3.04088 3.16982 3.26225 3.56961 3.86412 3.95768 4.00485 4.00899 4.12617 4.17781 4.31863 4.35579 4.48229 4.49484 4.69582 4.78726 4.84566 4.84950 4.91475 4.95640 4.98401 5.11917 5.16155 5.22914 5.28477 5.33587 5.40464 5.52138 5.70946 5.74539 5.89807 6.00719 6.02372 6.22630 6.67928 6.68185 6.97545 7.26328 7.54776 8.81321 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009643 B = 0.003676 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2903.087427 B = 7615.307570 C = 9532.539129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.611 5.611 4 C 0.280 3.720 5 C -0.544 4.544 6 H 0.048 0.952 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.966 3.034 10 H -0.272 1.272 11 H -0.265 1.265 12 H -0.280 1.280 13 C 0.693 3.307 14 O -0.624 6.624 15 N -0.674 5.674 16 C 0.162 3.838 17 C -0.128 4.128 18 C -0.077 4.077 19 C -0.128 4.128 20 C 0.101 3.899 21 N -0.538 5.538 22 C 0.512 3.488 23 O -0.519 6.519 24 C -0.137 4.137 25 C -0.135 4.135 26 C 0.515 3.485 27 O -0.515 6.515 28 C -0.137 4.137 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.030 0.970 35 H -0.004 1.004 36 H 0.268 0.732 37 H 0.422 0.578 38 H 0.170 0.830 39 H 0.181 0.819 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.162 0.838 43 H 0.141 0.859 44 H 0.164 0.836 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 -1.071 23.287 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.345 5.345 4 C 0.158 3.842 5 C -0.583 4.583 6 H 0.067 0.933 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.791 3.209 10 H -0.196 1.196 11 H -0.190 1.190 12 H -0.206 1.206 13 C 0.394 3.606 14 O -0.504 6.504 15 N -0.325 5.325 16 C 0.066 3.934 17 C -0.149 4.149 18 C -0.096 4.096 19 C -0.148 4.148 20 C 0.011 3.989 21 N -0.278 5.278 22 C 0.305 3.695 23 O -0.392 6.392 24 C -0.175 4.175 25 C -0.174 4.174 26 C 0.308 3.692 27 O -0.388 6.388 28 C -0.159 4.159 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.048 0.952 35 H 0.014 0.986 36 H 0.077 0.923 37 H 0.263 0.737 38 H 0.188 0.812 39 H 0.198 0.802 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.179 0.821 43 H 0.159 0.841 44 H 0.181 0.819 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.453 -0.535 22.932 22.943 hybrid contribution 0.645 -0.392 -1.280 1.486 sum 0.192 -0.927 21.652 21.672 Atomic orbital electron populations 1.22162 0.94120 1.03773 1.01795 1.21747 0.95634 0.81128 1.03848 1.47500 1.67149 1.15256 1.04572 1.18653 0.95354 0.91233 0.78959 1.21721 0.97895 1.32123 1.06531 0.93322 1.25811 1.02310 0.94389 0.96328 1.70045 1.37633 1.34057 1.14833 0.85393 0.79067 0.78044 0.78441 1.19619 1.18982 1.20623 1.16153 0.78800 0.84295 0.81308 1.90860 1.53528 1.19525 1.86479 1.42563 1.72909 1.14872 1.02189 1.17626 0.94541 0.95007 0.86227 1.21390 0.98376 1.02969 0.92135 1.21290 0.96885 0.93466 0.97923 1.21319 0.96380 0.99621 0.97503 1.17747 0.93248 0.93488 0.94373 1.44755 1.08591 1.09421 1.65025 1.22122 0.81952 0.92814 0.72632 1.90761 1.74407 1.27459 1.46612 1.22631 0.98192 0.86957 1.09768 1.22635 0.86459 0.98234 1.10073 1.22067 0.93261 0.81374 0.72529 1.90759 1.28045 1.72845 1.47194 1.21099 0.98861 0.99709 0.96211 0.88081 0.92468 0.93995 0.90095 0.89051 0.95185 0.98629 0.92301 0.73725 0.81230 0.80192 0.83893 0.84196 0.82053 0.84069 0.81864 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 10.24 71.98 0.74 -3.23 16 2 C 0.10 3.06 5.93 86.38 0.51 3.57 16 3 N -0.61 -27.20 2.46 -844.19 -2.07 -29.28 16 4 C 0.28 15.59 5.16 85.63 0.44 16.03 16 5 C -0.54 -32.38 9.39 25.60 0.24 -32.14 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.64 5.46 84.66 0.46 1.10 16 8 N -0.93 -56.86 13.28 21.45 0.28 -56.57 16 9 Si 0.97 46.07 29.54 68.60 2.03 48.09 16 10 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 C 0.69 31.89 8.12 179.06 1.45 33.34 16 14 O -0.62 -35.53 13.41 -4.01 -0.05 -35.59 16 15 N -0.67 -22.96 5.21 -317.22 -1.65 -24.61 16 16 C 0.16 5.44 6.28 38.13 0.24 5.68 16 17 C -0.13 -2.94 9.96 22.41 0.22 -2.72 16 18 C -0.08 -1.55 10.03 22.23 0.22 -1.33 16 19 C -0.13 -3.29 9.79 22.41 0.22 -3.07 16 20 C 0.10 3.37 4.94 38.06 0.19 3.56 16 21 N -0.54 -15.65 2.61 -579.78 -1.51 -17.16 16 22 C 0.51 13.51 7.96 88.00 0.70 14.21 16 23 O -0.52 -18.24 17.60 -2.86 -0.05 -18.29 16 24 C -0.14 -1.57 7.03 30.46 0.21 -1.35 16 25 C -0.14 -1.46 7.03 30.46 0.21 -1.25 16 26 C 0.52 12.98 7.95 87.99 0.70 13.68 16 27 O -0.52 -16.98 17.60 -2.88 -0.05 -17.03 16 28 C -0.14 -5.46 8.45 22.50 0.19 -5.27 16 29 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 33 H 0.09 2.18 6.30 -2.39 -0.02 2.17 16 34 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 35 H 0.00 -0.29 7.42 -2.39 -0.02 -0.30 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.42 10.57 6.52 -92.71 -0.60 9.96 16 38 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 39 H 0.18 1.93 8.06 -2.91 -0.02 1.90 16 40 H 0.14 2.98 8.06 -2.91 -0.02 2.96 16 41 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.16 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.10 4.82 6.28 -2.91 -0.02 4.80 16 Total: -1.00 -96.14 386.70 4.30 -91.83 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.43 Total: 17.77 kcal Atomic # 6 Polarization: 33.87 SS G_CDS: 6.96 Total: 40.83 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -4.96 Total: -127.62 kcal Atomic # 8 Polarization: -70.75 SS G_CDS: -0.15 Total: -70.91 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -96.14 4.30 -91.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347876163.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.872 kcal (2) G-P(sol) polarization free energy of solvation -96.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds