Wall clock time and date at job start Sat Apr 11 2020 07:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.46805 * 2 1 4 4 C 1.47012 * 110.99957 * 293.63201 * 3 2 1 5 5 C 1.53098 * 109.25866 * 177.61072 * 4 3 2 6 6 O 1.43014 * 109.25881 * 56.85080 * 5 4 3 7 7 C 1.43019 * 113.73812 * 301.33035 * 6 5 4 8 8 H 1.09004 * 109.50589 * 298.73664 * 7 6 5 9 9 C 1.50702 * 109.50854 * 178.60457 * 7 6 5 10 10 O 1.21275 * 119.99803 * 355.21930 * 9 7 6 11 11 N 1.34773 * 119.99773 * 175.21548 * 9 7 6 12 12 C 1.46505 * 119.99509 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.46799 * 179.97438 * 12 11 9 14 14 N 1.46505 * 109.46799 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99417 * 180.02562 * 14 13 12 16 16 O 1.21279 * 120.00594 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99510 * 180.02562 * 15 14 13 18 18 S 1.81001 * 109.47062 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00109 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00073 * 359.97438 * 19 18 17 21 21 C 1.38807 * 120.00207 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99607 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99914 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47017 * 60.00345 * 23 21 19 25 25 H 1.48502 * 109.46990 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47470 * 299.99997 * 23 21 19 27 27 C 1.47016 * 110.99576 * 170.00040 * 3 2 1 28 28 H 1.09002 * 109.47041 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47440 * 299.99803 * 1 2 3 30 30 H 1.08997 * 109.47199 * 60.00312 * 1 2 3 31 31 H 1.08994 * 109.47509 * 239.99934 * 2 1 3 32 32 H 1.09004 * 109.46969 * 119.99401 * 2 1 3 33 33 H 1.09003 * 109.50911 * 297.54542 * 4 3 2 34 34 H 1.08999 * 109.50678 * 57.67219 * 4 3 2 35 35 H 1.08996 * 109.50683 * 176.78285 * 5 4 3 36 36 H 1.08998 * 109.50446 * 296.87270 * 5 4 3 37 37 H 0.96994 * 120.00434 * 359.97438 * 11 9 7 38 38 H 1.08991 * 109.47349 * 300.00015 * 12 11 9 39 39 H 1.09001 * 109.47175 * 60.00515 * 12 11 9 40 40 H 1.08999 * 109.47623 * 300.00244 * 13 12 11 41 41 H 1.09001 * 109.47149 * 60.00093 * 13 12 11 42 42 H 0.96994 * 120.00056 * 359.97438 * 14 13 12 43 43 H 1.09004 * 109.46891 * 299.99270 * 17 15 14 44 44 H 1.09001 * 109.47349 * 59.99316 * 17 15 14 45 45 H 0.96998 * 119.99920 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.50576 * 302.31900 * 27 3 2 47 47 H 1.09000 * 109.51010 * 62.45959 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6765 2.0651 -1.2574 5 6 2.1514 3.5190 -1.1910 6 8 3.5569 3.5446 -0.9278 7 6 3.9266 2.8915 0.2897 8 1 3.4488 3.3930 1.1313 9 6 5.4236 2.9447 0.4549 10 8 6.1147 3.4104 -0.4262 11 7 5.9943 2.4749 1.5818 12 6 7.4495 2.5272 1.7426 13 6 7.8342 1.9357 3.1002 14 7 9.2895 1.9874 3.2607 15 6 9.8602 1.5175 4.3876 16 8 9.1691 1.0522 5.2689 17 6 11.3571 1.5712 4.5530 18 16 11.8122 0.8713 6.1589 19 6 13.5631 1.0551 6.0878 20 1 14.0249 1.4956 5.2164 21 6 14.3491 0.6329 7.1511 22 7 13.7865 0.0947 8.2124 23 14 16.2054 0.8272 7.0753 24 1 16.5469 2.2646 6.9253 25 1 16.8095 0.3034 8.3267 26 1 16.7356 0.0687 5.9140 27 6 3.4696 1.4312 0.2383 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.1662 1.5599 -2.0899 34 1 0.5962 2.0413 -1.4010 35 1 1.9504 4.0114 -2.1424 36 1 1.6215 4.0389 -0.3930 37 1 5.4415 2.1029 2.2867 38 1 7.9238 1.9519 0.9476 39 1 7.7838 3.5634 1.6904 40 1 7.3599 2.5113 3.8950 41 1 7.4998 0.8995 3.1529 42 1 9.8422 2.3592 2.5557 43 1 11.8314 0.9958 3.7579 44 1 11.6915 2.6074 4.5007 45 1 14.3357 -0.2007 8.9553 46 1 3.6982 0.9447 1.1866 47 1 3.9880 0.9159 -0.5703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348504242.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:22 Heat of formation + Delta-G solvation = -110.328060 kcal Electronic energy + Delta-G solvation = -26816.318358 eV Core-core repulsion = 22739.609730 eV Total energy + Delta-G solvation = -4076.708628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86373 -39.47796 -39.04067 -36.73141 -35.94119 -34.09459 -32.44493 -32.35926 -31.43896 -30.28207 -28.42148 -27.06823 -25.49530 -24.98617 -23.43809 -22.63172 -21.26215 -20.89651 -20.32418 -18.18807 -17.75671 -17.25409 -16.70268 -16.41829 -16.36679 -15.88962 -15.85753 -15.65840 -15.37080 -15.06413 -14.81417 -14.80496 -14.57558 -14.14768 -13.89906 -13.88462 -13.36185 -13.20764 -12.69281 -12.58463 -12.54568 -12.43213 -12.28900 -12.09080 -12.03953 -11.69467 -11.44506 -11.31503 -11.06238 -11.04553 -10.78540 -10.27832 -10.14866 -9.84640 -9.55348 -9.51575 -9.08992 -9.05901 -9.02028 -8.27179 -6.52475 -6.23115 -3.94130 2.13506 2.21891 3.00959 3.01726 3.10098 3.23086 3.26737 3.29579 3.49759 3.76818 4.12908 4.19105 4.21994 4.32331 4.35559 4.45927 4.50092 4.64516 4.69491 4.77899 4.86277 4.88076 4.96111 5.09219 5.10010 5.12189 5.12719 5.16008 5.30552 5.32307 5.41049 5.54131 5.58667 5.65150 5.70382 5.85766 5.90944 6.11037 6.25903 6.30851 6.45628 6.48873 6.99824 7.57037 7.58885 7.76192 8.33602 8.50786 9.22236 10.84271 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.027297 B = 0.001449 C = 0.001394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.498484 B =19314.564338 C =20081.092692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 N -0.535 5.535 4 C 0.011 3.989 5 C 0.063 3.937 6 O -0.356 6.356 7 C 0.080 3.920 8 H 0.096 0.904 9 C 0.523 3.477 10 O -0.513 6.513 11 N -0.723 5.723 12 C 0.110 3.890 13 C 0.111 3.889 14 N -0.737 5.737 15 C 0.535 3.465 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.028 3.972 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.405 0.595 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.401 0.599 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.269 0.731 46 H 0.094 0.906 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.302 3.747 -19.581 33.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.261 5.261 4 C -0.117 4.117 5 C -0.014 4.014 6 O -0.274 6.274 7 C 0.018 3.982 8 H 0.114 0.886 9 C 0.307 3.693 10 O -0.387 6.387 11 N -0.378 5.378 12 C -0.014 4.014 13 C -0.014 4.014 14 N -0.393 5.393 15 C 0.321 3.679 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.101 4.101 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.240 0.760 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.236 0.764 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.079 0.921 46 H 0.112 0.888 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -28.024 3.562 -18.318 33.668 hybrid contribution 2.136 0.056 -1.560 2.645 sum -25.888 3.618 -19.878 32.839 Atomic orbital electron populations 1.21799 0.94358 1.01948 1.02575 1.22133 0.96485 0.87875 1.01355 1.62267 1.12579 1.16888 1.34361 1.22908 1.02214 0.95780 0.90792 1.22769 0.81171 0.95114 1.02362 1.88132 1.23538 1.76547 1.39138 1.21902 0.92392 0.93701 0.90233 0.88646 1.20030 0.89195 0.78116 0.81995 1.90757 1.63927 1.43357 1.40615 1.45677 1.08071 1.64226 1.19862 1.21482 0.80132 1.02440 0.97323 1.21314 0.82482 1.01809 0.95780 1.45806 1.06602 1.65983 1.20874 1.20327 0.90232 0.76517 0.80843 1.90707 1.64301 1.43548 1.40407 1.23535 0.93292 1.05750 1.07857 1.85382 1.06352 1.79143 1.12432 1.22833 0.91452 1.47715 1.06532 0.90920 1.24988 0.99567 0.94461 0.94495 1.70003 1.36135 1.38131 1.06023 0.86218 0.82922 0.78672 0.77660 1.19921 1.20802 1.19929 1.22677 0.88771 0.95672 1.02939 0.91951 0.91606 0.92661 0.94516 0.90216 0.93584 0.88927 0.87699 0.91825 0.76047 0.90479 0.90411 0.90820 0.90900 0.76439 0.89055 0.89034 0.92109 0.88783 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 9.85 37.16 0.37 -0.22 16 2 C 0.05 0.24 5.68 -3.82 -0.02 0.22 16 3 N -0.54 -3.16 4.73 -234.30 -1.11 -4.27 16 4 C 0.01 0.06 5.44 -3.71 -0.02 0.04 16 5 C 0.06 0.38 7.01 37.21 0.26 0.64 16 6 O -0.36 -3.50 10.01 -55.06 -0.55 -4.05 16 7 C 0.08 0.62 3.22 -27.83 -0.09 0.53 16 8 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 9 C 0.52 5.16 7.18 -10.99 -0.08 5.08 16 10 O -0.51 -7.41 16.51 -14.27 -0.24 -7.65 16 11 N -0.72 -5.27 5.52 -60.29 -0.33 -5.60 16 12 C 0.11 0.91 5.79 -4.04 -0.02 0.88 16 13 C 0.11 1.09 5.79 -4.04 -0.02 1.07 16 14 N -0.74 -8.97 5.56 -60.29 -0.33 -9.30 16 15 C 0.53 9.48 7.85 -10.98 -0.09 9.39 16 16 O -0.52 -11.19 15.86 5.56 0.09 -11.10 16 17 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.16 9.50 30.94 0.29 -14.86 16 20 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 21 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 23 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 27 C 0.03 0.18 4.88 -3.71 -0.02 0.16 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.20 6.52 -51.93 -0.34 -0.14 16 31 H 0.04 0.19 8.12 -51.93 -0.42 -0.23 16 32 H 0.08 0.36 8.04 -51.93 -0.42 -0.06 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.09 0.36 6.38 -51.93 -0.33 0.03 16 35 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.40 1.88 8.34 -40.82 -0.34 1.54 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.40 3.78 8.47 -40.82 -0.35 3.44 16 43 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 44 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.09 0.43 7.95 -51.93 -0.41 0.01 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -37.78 402.45 -9.87 -47.65 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.65 Total: -1.11 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: 0.69 Total: 2.16 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: -1.04 Total: -44.39 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.70 Total: -22.79 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.78 -9.87 -47.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348504242.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.678 kcal (2) G-P(sol) polarization free energy of solvation -37.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds