Wall clock time and date at job start Sat Apr 11 2020 07:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47397 * 2 1 4 4 C 1.34803 * 117.00056 * 179.97438 * 3 2 1 5 5 O 1.21531 * 120.00017 * 359.97438 * 4 3 2 6 6 C 1.46946 * 119.99565 * 180.02562 * 4 3 2 7 7 C 1.32714 * 124.62522 * 180.02562 * 6 4 3 8 8 C 1.51107 * 110.74401 * 179.73028 * 7 6 4 9 9 C 1.54574 * 104.84376 * 16.87233 * 8 7 6 10 10 H 1.09010 * 110.97724 * 216.81367 * 9 8 7 11 11 N 1.46496 * 110.98466 * 93.05977 * 9 8 7 12 12 C 1.34779 * 120.00154 * 86.45199 * 11 9 8 13 13 O 1.21579 * 119.99768 * 0.02562 * 12 11 9 14 14 N 1.34775 * 120.00228 * 180.02562 * 12 11 9 15 15 C 1.39454 * 120.00222 * 175.12008 * 14 12 11 16 16 C 1.38644 * 119.64762 * 185.01697 * 15 14 12 17 17 C 1.40826 * 118.67159 * 179.72350 * 16 15 14 18 18 C 1.41545 * 120.99527 * 180.28168 * 17 16 15 19 19 H 1.08000 * 119.99794 * 203.99742 * 18 17 16 20 20 C 1.40029 * 120.00298 * 23.99850 * 18 17 16 21 21 N 1.30739 * 119.99789 * 16.78600 * 20 18 17 22 22 Si 1.86800 * 120.00022 * 196.79597 * 20 18 17 23 23 H 1.48499 * 109.46997 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47604 * 119.99939 * 22 20 18 25 25 H 1.48505 * 109.46912 * 239.99712 * 22 20 18 26 26 C 1.41155 * 118.00733 * 0.53452 * 17 16 15 27 27 C 1.36594 * 119.12645 * 359.74268 * 26 17 16 28 28 N 1.32066 * 121.26027 * 359.97438 * 27 26 17 29 29 C 1.51111 * 124.63450 * 0.20039 * 6 4 3 30 30 H 1.09000 * 109.47144 * 59.99656 * 1 2 3 31 31 H 1.08994 * 109.47121 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47059 * 300.00193 * 1 2 3 33 33 H 1.09002 * 109.46730 * 240.00193 * 2 1 3 34 34 H 1.09000 * 109.47144 * 120.00344 * 2 1 3 35 35 H 1.07999 * 124.62763 * 359.97438 * 7 6 4 36 36 H 1.09002 * 110.36523 * 135.70716 * 8 7 6 37 37 H 1.08997 * 110.36710 * 257.92032 * 8 7 6 38 38 H 0.96997 * 120.00190 * 266.45712 * 11 9 8 39 39 H 0.97001 * 119.99654 * 355.11176 * 14 12 11 40 40 H 1.08001 * 120.66560 * 359.97438 * 16 15 14 41 41 H 0.97006 * 119.99649 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.43866 * 179.71993 * 26 17 16 43 43 H 1.08002 * 119.36910 * 179.97438 * 27 26 17 44 44 H 1.08994 * 110.51859 * 44.68750 * 29 6 4 45 45 H 1.08998 * 110.24325 * 282.45847 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3505 1.5455 0.0005 5 8 4.0908 0.5817 0.0015 6 6 3.9121 2.9034 0.0011 7 6 5.2095 3.1829 0.0012 8 6 5.4351 4.6770 -0.0048 9 6 4.0800 5.2838 0.4251 10 1 3.8786 6.2098 -0.1137 11 7 4.0391 5.5031 1.8730 12 6 4.5195 6.6491 2.3949 13 8 4.9864 7.5011 1.6640 14 7 4.4823 6.8506 3.7270 15 6 5.0704 7.9894 4.2766 16 6 5.1201 8.1387 5.6541 17 6 5.7239 9.2939 6.1872 18 6 5.8068 9.4937 7.5860 19 1 5.8997 10.4933 7.9841 20 6 5.7685 8.3953 8.4537 21 7 5.9858 7.1910 7.9936 22 14 5.4065 8.6507 10.2684 23 1 5.1989 10.0972 10.5329 24 1 4.1813 7.8983 10.6395 25 1 6.5523 8.1598 11.0755 26 6 6.2390 10.2492 5.2846 27 6 6.1386 10.0175 3.9422 28 7 5.5707 8.9197 3.4769 29 6 3.0914 4.1722 0.0056 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.9965 2.4433 0.0012 36 1 6.2143 4.9458 0.7085 37 1 5.7041 5.0160 -1.0051 38 1 3.6663 4.8235 2.4561 39 1 4.0464 6.2036 4.3034 40 1 4.7078 7.3823 6.3054 41 1 5.9588 6.4300 8.5946 42 1 6.7061 11.1516 5.6506 43 1 6.5310 10.7460 3.2482 44 1 2.2766 4.0976 0.7256 45 1 2.6984 4.3707 -0.9916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364409468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:40 Heat of formation + Delta-G solvation = -58.397634 kcal Electronic energy + Delta-G solvation = -28815.888599 eV Core-core repulsion = 24605.987891 eV Total energy + Delta-G solvation = -4209.900707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.81702 -39.98873 -38.75266 -37.64125 -36.75327 -34.33081 -33.73769 -33.35197 -32.08774 -30.52123 -29.27867 -28.82728 -27.83204 -25.99229 -24.29331 -22.62372 -22.28405 -21.88152 -20.69052 -20.11986 -19.16134 -18.10927 -17.75949 -17.64725 -16.99867 -16.85239 -16.23617 -15.60185 -15.09411 -14.81716 -14.49157 -14.41054 -14.21416 -14.12596 -13.52309 -13.37811 -13.26771 -13.06992 -12.86299 -12.78250 -12.61889 -12.37203 -12.30073 -12.26339 -11.89936 -11.80027 -11.47265 -11.43457 -11.21548 -10.89843 -10.87157 -10.74493 -10.28830 -10.13352 -9.77835 -9.63196 -9.36912 -9.35296 -8.89002 -7.98618 -7.71370 -7.02138 -6.81628 -4.61271 0.84790 2.37717 2.67754 2.70031 2.78549 2.98354 3.01169 3.06565 3.24292 3.80322 3.84199 4.15032 4.27587 4.50936 4.54803 4.58739 4.66874 4.71193 4.85506 4.88648 5.07641 5.23213 5.34236 5.38445 5.43041 5.54286 5.60354 5.68532 5.70628 5.79042 5.95832 5.98609 6.11999 6.17201 6.54540 6.61248 6.71460 6.81338 6.94172 7.10648 7.27815 7.43510 7.48670 7.48722 7.85438 8.10773 8.37943 8.46006 8.72722 8.75301 9.16435 9.73593 10.05442 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.002169 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.743772 B =12906.154091 C =14314.961709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.519 3.481 5 O -0.513 6.513 6 C -0.192 4.192 7 C -0.038 4.038 8 C -0.125 4.125 9 C 0.167 3.833 10 H 0.107 0.893 11 N -0.746 5.746 12 C 0.693 3.307 13 O -0.531 6.531 14 N -0.668 5.668 15 C 0.356 3.644 16 C -0.248 4.248 17 C 0.144 3.856 18 C -0.455 4.455 19 H 0.083 0.917 20 C 0.078 3.922 21 N -0.787 5.787 22 Si 0.910 3.090 23 H -0.259 1.259 24 H -0.271 1.271 25 H -0.274 1.274 26 C -0.285 4.285 27 C 0.120 3.880 28 N -0.553 5.553 29 C -0.086 4.086 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.392 0.608 39 H 0.404 0.596 40 H 0.127 0.873 41 H 0.281 0.719 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.086 0.914 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.047 -13.348 -12.290 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.269 6.269 4 C 0.366 3.634 5 O -0.403 6.403 6 C -0.194 4.194 7 C -0.056 4.056 8 C -0.163 4.163 9 C 0.060 3.940 10 H 0.125 0.875 11 N -0.404 5.404 12 C 0.392 3.608 13 O -0.402 6.402 14 N -0.315 5.315 15 C 0.130 3.870 16 C -0.274 4.274 17 C 0.136 3.864 18 C -0.486 4.486 19 H 0.101 0.899 20 C -0.141 4.141 21 N -0.412 5.412 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.309 4.309 27 C -0.033 4.033 28 N -0.273 5.273 29 C -0.124 4.124 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.159 0.841 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.226 0.774 39 H 0.238 0.762 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.105 0.895 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.461 -13.241 -13.876 20.963 hybrid contribution -0.330 -0.962 2.426 2.631 sum -8.792 -14.203 -11.449 20.251 Atomic orbital electron populations 1.21810 0.92461 1.03024 1.03690 1.23038 0.95453 0.80068 1.02627 1.86601 1.23872 1.32284 1.84165 1.20844 0.80536 0.89560 0.72504 1.90861 1.60538 1.42484 1.46456 1.20917 0.95744 0.91168 1.11530 1.24329 0.95528 0.98360 0.87397 1.22086 1.00089 0.90499 1.03649 1.21420 0.93187 0.98404 0.80959 0.87539 1.45238 1.68313 1.19585 1.07253 1.16077 0.79807 0.82237 0.82665 1.91013 1.48150 1.42975 1.58065 1.42556 1.59045 1.23955 1.05954 1.17937 0.94139 0.86255 0.88699 1.21483 1.11016 1.03900 0.90992 1.17560 0.86016 0.89559 0.93271 1.19607 1.44262 0.94282 0.90435 0.89932 1.25960 0.91876 0.94563 1.01718 1.69795 1.33592 0.99936 1.37899 0.86227 0.78840 0.80040 0.81453 1.18263 1.19638 1.19909 1.21652 1.11574 1.03450 0.94216 1.21477 0.95496 0.93263 0.93101 1.67210 1.18627 1.03232 1.38182 1.21447 0.97738 0.89837 1.03369 0.91407 0.90196 0.91318 0.91251 0.91166 0.84122 0.88760 0.87970 0.77443 0.76208 0.85571 0.90810 0.88072 0.86045 0.89515 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.29 37.16 0.38 -0.42 16 2 C 0.06 0.48 6.20 37.16 0.23 0.71 16 3 O -0.35 -3.51 10.04 -40.77 -0.41 -3.92 16 4 C 0.52 5.88 7.94 34.26 0.27 6.16 16 5 O -0.51 -7.09 16.56 -19.29 -0.32 -7.41 16 6 C -0.19 -1.89 6.09 -102.78 -0.63 -2.52 16 7 C -0.04 -0.36 10.43 -35.99 -0.38 -0.74 16 8 C -0.13 -1.27 6.52 -26.86 -0.18 -1.45 16 9 C 0.17 1.81 3.41 -66.28 -0.23 1.58 16 10 H 0.11 1.27 7.73 -51.92 -0.40 0.86 16 11 N -0.75 -9.61 5.16 -57.06 -0.29 -9.91 16 12 C 0.69 12.76 8.52 -86.92 -0.74 12.02 16 13 O -0.53 -11.98 14.34 5.30 0.08 -11.90 16 14 N -0.67 -12.89 5.40 -15.86 -0.09 -12.98 16 15 C 0.36 8.56 7.42 -154.68 -1.15 7.42 16 16 C -0.25 -6.24 8.63 -38.45 -0.33 -6.57 16 17 C 0.14 3.78 5.60 -106.55 -0.60 3.18 16 18 C -0.45 -11.61 9.12 -37.65 -0.34 -11.96 16 19 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 20 C 0.08 1.87 5.20 -17.35 -0.09 1.78 16 21 N -0.79 -19.24 10.93 55.55 0.61 -18.63 16 22 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 C -0.28 -6.98 9.85 -39.07 -0.38 -7.36 16 27 C 0.12 2.89 11.10 -18.04 -0.20 2.69 16 28 N -0.55 -14.07 7.86 -12.76 -0.10 -14.17 16 29 C -0.09 -0.74 6.17 -26.86 -0.17 -0.90 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.14 1.29 8.03 -52.49 -0.42 0.87 16 36 H 0.09 1.16 8.09 -51.93 -0.42 0.74 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.39 4.13 8.59 -40.82 -0.35 3.78 16 39 H 0.40 6.39 8.71 -40.82 -0.36 6.03 16 40 H 0.13 3.15 6.22 -52.49 -0.33 2.82 16 41 H 0.28 6.20 8.29 -40.82 -0.34 5.86 16 42 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 43 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 44 H 0.09 0.71 8.03 -51.93 -0.42 0.30 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 388.39 15.07 5.85 5.85 Total: -1.00 -33.23 388.39 -10.27 -43.50 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -6.05 Total: 13.21 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -4.52 Total: 3.61 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: 0.13 Total: -55.69 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -0.65 Total: -23.23 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.23 -10.27 -43.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364409468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.899 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds