Wall clock time and date at job start Sat Apr 11 2020 07:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47397 * 2 1 4 4 C 1.34803 * 117.00056 * 179.97438 * 3 2 1 5 5 O 1.21531 * 120.00017 * 359.97438 * 4 3 2 6 6 C 1.46946 * 119.99565 * 180.02562 * 4 3 2 7 7 C 1.32714 * 124.62522 * 180.02562 * 6 4 3 8 8 C 1.51107 * 110.74401 * 179.73028 * 7 6 4 9 9 C 1.54574 * 104.84376 * 16.87233 * 8 7 6 10 10 H 1.09010 * 110.97724 * 216.81367 * 9 8 7 11 11 N 1.46496 * 110.98466 * 93.05977 * 9 8 7 12 12 C 1.34779 * 120.00154 * 86.45199 * 11 9 8 13 13 O 1.21579 * 119.99768 * 0.02562 * 12 11 9 14 14 N 1.34775 * 120.00228 * 180.02562 * 12 11 9 15 15 C 1.39454 * 120.00222 * 175.12008 * 14 12 11 16 16 C 1.38644 * 119.64762 * 185.01697 * 15 14 12 17 17 C 1.40826 * 118.67159 * 179.72350 * 16 15 14 18 18 C 1.41545 * 120.99527 * 180.28168 * 17 16 15 19 19 H 1.08000 * 119.99794 * 203.99742 * 18 17 16 20 20 C 1.40029 * 120.00298 * 23.99850 * 18 17 16 21 21 N 1.30739 * 119.99789 * 16.78600 * 20 18 17 22 22 Si 1.86800 * 120.00022 * 196.79597 * 20 18 17 23 23 H 1.48499 * 109.46997 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47604 * 119.99939 * 22 20 18 25 25 H 1.48505 * 109.46912 * 239.99712 * 22 20 18 26 26 C 1.41155 * 118.00733 * 0.53452 * 17 16 15 27 27 C 1.36594 * 119.12645 * 359.74268 * 26 17 16 28 28 N 1.32066 * 121.26027 * 359.97438 * 27 26 17 29 29 C 1.51111 * 124.63450 * 0.20039 * 6 4 3 30 30 H 1.09000 * 109.47144 * 59.99656 * 1 2 3 31 31 H 1.08994 * 109.47121 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47059 * 300.00193 * 1 2 3 33 33 H 1.09002 * 109.46730 * 240.00193 * 2 1 3 34 34 H 1.09000 * 109.47144 * 120.00344 * 2 1 3 35 35 H 1.07999 * 124.62763 * 359.97438 * 7 6 4 36 36 H 1.09002 * 110.36523 * 135.70716 * 8 7 6 37 37 H 1.08997 * 110.36710 * 257.92032 * 8 7 6 38 38 H 0.96997 * 120.00190 * 266.45712 * 11 9 8 39 39 H 0.97001 * 119.99654 * 355.11176 * 14 12 11 40 40 H 1.08001 * 120.66560 * 359.97438 * 16 15 14 41 41 H 0.97006 * 119.99649 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.43866 * 179.71993 * 26 17 16 43 43 H 1.08002 * 119.36910 * 179.97438 * 27 26 17 44 44 H 1.08994 * 110.51859 * 44.68750 * 29 6 4 45 45 H 1.08998 * 110.24325 * 282.45847 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3505 1.5455 0.0005 5 8 4.0908 0.5817 0.0015 6 6 3.9121 2.9034 0.0011 7 6 5.2095 3.1829 0.0012 8 6 5.4351 4.6770 -0.0048 9 6 4.0800 5.2838 0.4251 10 1 3.8786 6.2098 -0.1137 11 7 4.0391 5.5031 1.8730 12 6 4.5195 6.6491 2.3949 13 8 4.9864 7.5011 1.6640 14 7 4.4823 6.8506 3.7270 15 6 5.0704 7.9894 4.2766 16 6 5.1201 8.1387 5.6541 17 6 5.7239 9.2939 6.1872 18 6 5.8068 9.4937 7.5860 19 1 5.8997 10.4933 7.9841 20 6 5.7685 8.3953 8.4537 21 7 5.9858 7.1910 7.9936 22 14 5.4065 8.6507 10.2684 23 1 5.1989 10.0972 10.5329 24 1 4.1813 7.8983 10.6395 25 1 6.5523 8.1598 11.0755 26 6 6.2390 10.2492 5.2846 27 6 6.1386 10.0175 3.9422 28 7 5.5707 8.9197 3.4769 29 6 3.0914 4.1722 0.0056 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.9965 2.4433 0.0012 36 1 6.2143 4.9458 0.7085 37 1 5.7041 5.0160 -1.0051 38 1 3.6663 4.8235 2.4561 39 1 4.0464 6.2036 4.3034 40 1 4.7078 7.3823 6.3054 41 1 5.9588 6.4300 8.5946 42 1 6.7061 11.1516 5.6506 43 1 6.5310 10.7460 3.2482 44 1 2.2766 4.0976 0.7256 45 1 2.6984 4.3707 -0.9916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364409468.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:39 Heat of formation + Delta-G solvation = -77.916116 kcal Electronic energy + Delta-G solvation = -28816.734984 eV Core-core repulsion = 24605.987891 eV Total energy + Delta-G solvation = -4210.747092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.75451 -41.31915 -40.13111 -39.01592 -37.62985 -36.09954 -35.44627 -34.58381 -32.66318 -32.40313 -30.65012 -29.75261 -29.02843 -27.88477 -24.99364 -24.00697 -23.71197 -23.11858 -22.00491 -21.45068 -20.04320 -19.58481 -19.36079 -18.55623 -17.95765 -17.63170 -17.60268 -17.12376 -16.59659 -16.26389 -16.04263 -15.94708 -15.23373 -15.19178 -14.96985 -14.71036 -14.42577 -14.29665 -14.04588 -13.87784 -13.69593 -13.56814 -13.18302 -12.97043 -12.94262 -12.90670 -12.81740 -12.64515 -12.47671 -12.26738 -12.03888 -11.89166 -11.63524 -11.54615 -11.48869 -11.24576 -11.13170 -10.20148 -10.08697 -9.90560 -9.57919 -8.82107 -8.62548 -6.54246 0.02597 0.87103 1.01953 1.42109 1.55732 1.58214 1.61489 1.67553 1.84851 2.20958 2.30509 2.84199 3.19649 3.33376 3.47551 3.79860 3.87237 4.00325 4.03109 4.07758 4.18960 4.29210 4.34906 4.47912 4.66136 4.73917 4.75137 4.87072 4.88124 4.90249 4.92494 4.92822 4.97590 5.11901 5.12710 5.22130 5.24051 5.35709 5.40881 5.52770 5.61307 5.68734 5.86204 5.99284 6.29698 6.58537 6.65020 6.82212 6.84306 7.01438 7.65509 7.93252 8.27254 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013169 B = 0.002169 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.743772 B =12906.154091 C =14314.961709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.353 6.353 4 C 0.520 3.480 5 O -0.544 6.544 6 C -0.194 4.194 7 C -0.033 4.033 8 C -0.119 4.119 9 C 0.160 3.840 10 H 0.100 0.900 11 N -0.724 5.724 12 C 0.692 3.308 13 O -0.573 6.573 14 N -0.662 5.662 15 C 0.355 3.645 16 C -0.265 4.265 17 C 0.115 3.885 18 C -0.484 4.484 19 H 0.083 0.917 20 C 0.040 3.960 21 N -0.811 5.811 22 Si 0.986 3.014 23 H -0.258 1.258 24 H -0.262 1.262 25 H -0.267 1.267 26 C -0.299 4.299 27 C 0.115 3.885 28 N -0.576 5.576 29 C -0.072 4.072 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.144 0.856 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.407 0.593 39 H 0.418 0.582 40 H 0.123 0.877 41 H 0.292 0.708 42 H 0.114 0.886 43 H 0.148 0.852 44 H 0.095 0.905 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 -14.350 -12.076 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.269 6.269 4 C 0.368 3.632 5 O -0.437 6.437 6 C -0.195 4.195 7 C -0.052 4.052 8 C -0.157 4.157 9 C 0.055 3.945 10 H 0.118 0.882 11 N -0.382 5.382 12 C 0.392 3.608 13 O -0.447 6.447 14 N -0.311 5.311 15 C 0.127 3.873 16 C -0.291 4.291 17 C 0.106 3.894 18 C -0.514 4.514 19 H 0.101 0.899 20 C -0.177 4.177 21 N -0.436 5.436 22 Si 0.807 3.193 23 H -0.182 1.182 24 H -0.186 1.186 25 H -0.192 1.192 26 C -0.323 4.323 27 C -0.038 4.038 28 N -0.296 5.296 29 C -0.109 4.109 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.162 0.838 36 H 0.090 0.910 37 H 0.138 0.862 38 H 0.243 0.757 39 H 0.255 0.745 40 H 0.141 0.859 41 H 0.103 0.897 42 H 0.132 0.868 43 H 0.165 0.835 44 H 0.114 0.886 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.773 -14.304 -13.684 22.077 hybrid contribution 0.062 -0.731 2.291 2.405 sum -9.712 -15.036 -11.394 21.218 Atomic orbital electron populations 1.21825 0.90382 1.04368 1.03787 1.23303 0.97067 0.79053 1.02575 1.86601 1.23018 1.33647 1.83664 1.21046 0.80822 0.89632 0.71710 1.90847 1.61253 1.43496 1.48081 1.20932 0.95921 0.91045 1.11614 1.24316 0.95741 0.97968 0.87157 1.22011 0.98861 0.90820 1.04026 1.21623 0.94563 0.99055 0.79267 0.88208 1.45071 1.66664 1.17949 1.08482 1.16205 0.79565 0.83087 0.81930 1.90980 1.50092 1.44854 1.58823 1.42457 1.58746 1.23084 1.06826 1.18138 0.93466 0.87053 0.88618 1.21457 1.12114 1.04031 0.91504 1.17997 0.86624 0.90506 0.94227 1.19881 1.45636 0.95073 0.90829 0.89854 1.26812 0.90905 0.93856 1.06175 1.69823 1.33021 1.00821 1.39934 0.85093 0.78955 0.79940 0.75351 1.18165 1.18606 1.19155 1.21832 1.12130 1.03907 0.94434 1.21925 0.94867 0.93476 0.93550 1.67346 1.19586 1.03987 1.38696 1.21385 0.96937 0.87885 1.04731 0.91085 0.88252 0.91375 0.91151 0.91480 0.83812 0.90993 0.86196 0.75740 0.74467 0.85944 0.89735 0.86774 0.83456 0.88647 0.86470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.29 71.98 0.74 -0.51 16 2 C 0.05 0.76 6.20 71.98 0.45 1.20 16 3 O -0.35 -6.48 10.04 -57.14 -0.57 -7.05 16 4 C 0.52 11.14 7.94 70.10 0.56 11.70 16 5 O -0.54 -14.72 16.56 19.73 0.33 -14.39 16 6 C -0.19 -3.47 6.09 -18.62 -0.11 -3.59 16 7 C -0.03 -0.60 10.43 24.64 0.26 -0.34 16 8 C -0.12 -2.29 6.52 30.51 0.20 -2.09 16 9 C 0.16 3.24 3.41 46.06 0.16 3.40 16 10 H 0.10 2.25 7.73 -2.38 -0.02 2.23 16 11 N -0.72 -17.81 5.16 -452.71 -2.34 -20.15 16 12 C 0.69 25.31 8.52 179.05 1.53 26.84 16 13 O -0.57 -25.98 14.34 -3.96 -0.06 -26.04 16 14 N -0.66 -25.59 5.40 -322.37 -1.74 -27.33 16 15 C 0.35 17.32 7.42 132.76 0.98 18.31 16 16 C -0.27 -13.61 8.63 23.00 0.20 -13.41 16 17 C 0.11 6.13 5.60 -21.11 -0.12 6.01 16 18 C -0.48 -24.99 9.12 23.52 0.21 -24.78 16 19 H 0.08 4.14 7.90 -2.91 -0.02 4.11 16 20 C 0.04 1.89 5.20 85.29 0.44 2.34 16 21 N -0.81 -39.57 10.93 21.84 0.24 -39.33 16 22 Si 0.99 35.73 29.59 68.60 2.03 37.76 16 23 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 24 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 25 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 26 C -0.30 -14.88 9.85 22.60 0.22 -14.66 16 27 C 0.11 5.56 11.10 84.27 0.94 6.50 16 28 N -0.58 -29.65 7.86 -194.27 -1.53 -31.18 16 29 C -0.07 -1.06 6.17 30.51 0.19 -0.87 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.14 2.51 8.03 -2.91 -0.02 2.48 16 36 H 0.07 1.76 8.09 -2.39 -0.02 1.74 16 37 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.41 7.85 8.59 -92.71 -0.80 7.05 16 39 H 0.42 13.10 8.71 -92.71 -0.81 12.29 16 40 H 0.12 6.24 6.22 -2.91 -0.02 6.22 16 41 H 0.29 12.67 8.29 -92.70 -0.77 11.91 16 42 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 43 H 0.15 6.14 8.06 -2.91 -0.02 6.12 16 44 H 0.10 1.29 8.03 -2.39 -0.02 1.27 16 45 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -72.49 388.39 2.64 -69.85 By element: Atomic # 1 Polarization: 42.37 SS G_CDS: -0.56 Total: 41.81 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 6.84 Total: 16.04 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -5.37 Total: -117.98 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -0.30 Total: -47.48 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Total: -72.49 2.64 -69.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364409468.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.066 kcal (2) G-P(sol) polarization free energy of solvation -72.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds