Wall clock time and date at job start Sat Apr 11 2020 07:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47123 * 2 1 4 4 C 1.34802 * 117.00238 * 180.02562 * 3 2 1 5 5 O 1.21533 * 119.99753 * 359.97438 * 4 3 2 6 6 C 1.46945 * 120.00090 * 180.02562 * 4 3 2 7 7 C 1.32713 * 124.62612 * 180.02562 * 6 4 3 8 8 C 1.51109 * 110.74100 * 179.72899 * 7 6 4 9 9 C 1.54575 * 104.84707 * 16.87240 * 8 7 6 10 10 H 1.08999 * 110.98487 * 93.09684 * 9 8 7 11 11 N 1.46507 * 110.98188 * 216.85302 * 9 8 7 12 12 C 1.34781 * 119.99614 * 273.54490 * 11 9 8 13 13 O 1.21572 * 120.00157 * 359.97438 * 12 11 9 14 14 N 1.34780 * 119.99653 * 179.97438 * 12 11 9 15 15 C 1.39244 * 119.99569 * 174.84278 * 14 12 11 16 16 C 1.39684 * 119.57357 * 185.33253 * 15 14 12 17 17 C 1.38650 * 119.49717 * 179.97438 * 16 15 14 18 18 C 1.38347 * 118.66832 * 0.02562 * 17 16 15 19 19 C 1.40578 * 119.13543 * 359.97438 * 18 17 16 20 20 C 1.41326 * 119.79055 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99954 * 359.97438 * 20 19 18 22 22 C 1.40028 * 120.00131 * 179.97438 * 20 19 18 23 23 N 1.30746 * 120.00058 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00046 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47115 * 59.99922 * 24 22 20 26 26 H 1.48503 * 109.47169 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47196 * 299.99914 * 24 22 20 28 28 N 1.31906 * 119.57672 * 5.06969 * 15 14 12 29 29 C 1.51113 * 124.63099 * 0.19206 * 6 4 3 30 30 H 1.08999 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47140 * 299.99805 * 1 2 3 32 32 H 1.09001 * 109.47164 * 60.00153 * 1 2 3 33 33 H 1.08994 * 109.47290 * 239.99915 * 2 1 3 34 34 H 1.09001 * 109.47164 * 119.99847 * 2 1 3 35 35 H 1.07996 * 124.62961 * 359.97438 * 7 6 4 36 36 H 1.09004 * 110.36525 * 135.71416 * 8 7 6 37 37 H 1.09001 * 110.36813 * 257.91811 * 8 7 6 38 38 H 0.96991 * 120.00080 * 93.53991 * 11 9 8 39 39 H 0.96996 * 120.00032 * 354.84641 * 14 12 11 40 40 H 1.08004 * 120.25177 * 0.02974 * 16 15 14 41 41 H 1.07997 * 120.66440 * 179.97438 * 17 16 15 42 42 H 1.07995 * 120.43398 * 180.02562 * 18 17 16 43 43 H 0.96990 * 120.00086 * 180.02562 * 23 22 20 44 44 H 1.09005 * 110.51620 * 44.69615 * 29 6 4 45 45 H 1.08997 * 110.24833 * 282.46443 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5457 -0.0005 5 8 4.0907 0.5818 -0.0005 6 6 3.9120 2.9035 0.0000 7 6 5.2094 3.1830 -0.0009 8 6 5.4349 4.6772 -0.0067 9 6 4.0802 5.2839 0.4245 10 1 4.0509 5.4474 1.5018 11 7 3.8084 6.5281 -0.2997 12 6 4.2837 7.6987 0.1699 13 8 4.9375 7.7221 1.1945 14 7 4.0341 8.8433 -0.4966 15 6 4.4318 10.0638 0.0428 16 6 4.0712 11.2512 -0.5985 17 6 4.4677 12.4657 -0.0598 18 6 5.2143 12.4630 1.1049 19 6 5.5453 11.2346 1.7029 20 6 6.3070 11.2157 2.8932 21 1 6.6331 12.1431 3.3403 22 6 6.6388 9.9946 3.4928 23 7 6.2436 8.8718 2.9518 24 14 7.6462 9.9696 5.0657 25 1 6.9194 10.7065 6.1307 26 1 7.8598 8.5640 5.4946 27 1 8.9596 10.6186 4.8227 28 7 5.1398 10.0841 1.1555 29 6 3.0912 4.1723 0.0053 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.9964 2.4435 -0.0018 36 1 6.2148 4.9458 0.7059 37 1 5.7031 5.0165 -1.0072 38 1 3.2865 6.5095 -1.1170 39 1 3.5773 8.8167 -1.3519 40 1 3.4873 11.2235 -1.5067 41 1 4.1997 13.3951 -0.5402 42 1 5.5378 13.3925 1.5495 43 1 6.4731 8.0260 3.3673 44 1 2.2769 4.0976 0.7261 45 1 2.6974 4.3710 -0.9914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365076260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:49 Heat of formation + Delta-G solvation = -34.277472 kcal Electronic energy + Delta-G solvation = -29322.479458 eV Core-core repulsion = 25113.624680 eV Total energy + Delta-G solvation = -4208.854779 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.71760 -39.70410 -38.53113 -37.38205 -36.67793 -34.10428 -33.29519 -32.95329 -32.04896 -30.26986 -29.29639 -28.79331 -27.83610 -25.47267 -24.21383 -22.60222 -22.20226 -21.31341 -20.67084 -19.92157 -19.08828 -18.09470 -17.59719 -17.20146 -16.82917 -16.82399 -16.27497 -15.51070 -14.69930 -14.46641 -14.44633 -14.33156 -14.24874 -13.69019 -13.30533 -13.22673 -13.13466 -12.89854 -12.77514 -12.62039 -12.41678 -12.27603 -12.10141 -11.88886 -11.80496 -11.68507 -11.29288 -11.10905 -10.94439 -10.83248 -10.71342 -10.63666 -10.43647 -9.92494 -9.68933 -9.26564 -9.11312 -9.00238 -8.54251 -7.92907 -7.19472 -6.92689 -6.08914 -4.36555 0.91276 2.43081 2.74048 2.86897 3.15049 3.17854 3.18573 3.20521 3.30067 4.09071 4.10617 4.29060 4.43801 4.57876 4.62219 4.69587 4.85268 4.90997 4.97917 5.01531 5.19031 5.25350 5.40915 5.41508 5.54723 5.61217 5.69756 5.82282 6.02427 6.07700 6.09441 6.15688 6.18046 6.26464 6.49656 6.62275 6.81731 6.87336 6.95834 7.25681 7.36916 7.53774 7.64098 7.75479 7.84042 8.19261 8.31498 8.66410 8.82054 9.08633 9.58551 10.29053 10.51983 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.002450 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.491422 B =11424.102570 C =12794.627021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.520 3.480 5 O -0.514 6.514 6 C -0.188 4.188 7 C -0.035 4.035 8 C -0.125 4.125 9 C 0.172 3.828 10 H 0.104 0.896 11 N -0.752 5.752 12 C 0.664 3.336 13 O -0.459 6.459 14 N -0.673 5.673 15 C 0.386 3.614 16 C -0.359 4.359 17 C -0.036 4.036 18 C -0.307 4.307 19 C 0.271 3.729 20 C -0.425 4.425 21 H 0.081 0.919 22 C 0.057 3.943 23 N -0.649 5.649 24 Si 0.894 3.106 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.268 1.268 28 N -0.470 5.470 29 C -0.085 4.085 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.386 0.614 39 H 0.395 0.605 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.272 0.728 44 H 0.085 0.915 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.557 -15.481 -7.696 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.269 6.269 4 C 0.367 3.633 5 O -0.405 6.405 6 C -0.190 4.190 7 C -0.054 4.054 8 C -0.164 4.164 9 C 0.066 3.934 10 H 0.122 0.878 11 N -0.411 5.411 12 C 0.362 3.638 13 O -0.323 6.323 14 N -0.321 5.321 15 C 0.146 3.854 16 C -0.385 4.385 17 C -0.060 4.060 18 C -0.330 4.330 19 C 0.146 3.854 20 C -0.455 4.455 21 H 0.099 0.901 22 C -0.173 4.173 23 N -0.267 5.267 24 Si 0.719 3.281 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.192 1.192 28 N -0.189 5.189 29 C -0.122 4.122 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.159 0.841 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.219 0.781 39 H 0.228 0.772 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.510 -16.814 -6.189 19.427 hybrid contribution -0.295 0.461 -0.736 0.917 sum -7.805 -16.353 -6.925 19.398 Atomic orbital electron populations 1.21809 0.92500 1.02976 1.03706 1.23030 0.95438 0.80136 1.02591 1.86609 1.23914 1.32205 1.84154 1.20849 0.80503 0.89560 0.72406 1.90853 1.60537 1.42468 1.46611 1.20805 0.95709 0.90977 1.11478 1.24306 0.95468 0.98303 0.87340 1.22073 1.00487 0.90024 1.03773 1.21348 0.91995 0.82109 0.97996 0.87838 1.45287 1.60604 1.05534 1.29679 1.16439 0.82249 0.79970 0.85138 1.91393 1.36925 1.83304 1.20674 1.42547 1.61734 1.04361 1.23469 1.18339 0.92682 0.82291 0.92050 1.20436 1.19293 0.92211 1.06529 1.20539 0.95272 0.95466 0.94718 1.21618 1.11954 0.98295 1.01158 1.18382 0.89509 0.85630 0.91891 1.19531 1.27348 0.93431 1.05225 0.90080 1.26180 0.96600 0.95979 0.98507 1.70333 1.26732 0.97507 1.32111 0.86613 0.80889 0.77965 0.82657 1.19249 1.20438 1.19245 1.68691 1.14391 1.27547 1.08267 1.21355 0.97920 0.90043 1.02920 0.90229 0.91321 0.91403 0.91259 0.91199 0.84089 0.88615 0.88661 0.78144 0.77234 0.89194 0.88675 0.88634 0.91643 0.89666 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.29 37.16 0.38 -0.48 16 2 C 0.06 0.51 6.20 37.16 0.23 0.74 16 3 O -0.35 -3.76 10.04 -40.77 -0.41 -4.17 16 4 C 0.52 6.28 7.94 34.26 0.27 6.55 16 5 O -0.51 -7.35 16.56 -19.29 -0.32 -7.67 16 6 C -0.19 -2.05 6.09 -102.78 -0.63 -2.68 16 7 C -0.04 -0.37 10.43 -35.99 -0.38 -0.75 16 8 C -0.13 -1.46 6.53 -26.86 -0.18 -1.63 16 9 C 0.17 2.15 3.41 -66.27 -0.23 1.93 16 10 H 0.10 1.55 7.73 -51.93 -0.40 1.15 16 11 N -0.75 -10.11 5.19 -57.05 -0.30 -10.40 16 12 C 0.66 12.85 8.52 -86.91 -0.74 12.11 16 13 O -0.46 -11.18 11.84 5.30 0.06 -11.12 16 14 N -0.67 -12.84 5.39 -15.78 -0.09 -12.93 16 15 C 0.39 9.30 7.43 -155.00 -1.15 8.15 16 16 C -0.36 -7.97 9.95 -38.89 -0.39 -8.36 16 17 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 18 C -0.31 -7.72 9.83 -38.66 -0.38 -8.10 16 19 C 0.27 7.60 6.55 -85.00 -0.56 7.04 16 20 C -0.42 -11.67 9.14 -37.74 -0.34 -12.01 16 21 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 22 C 0.06 1.49 5.50 -17.34 -0.10 1.40 16 23 N -0.65 -17.77 8.98 55.55 0.50 -17.27 16 24 Si 0.89 19.23 29.56 -169.99 -5.02 14.20 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 28 N -0.47 -13.08 5.73 -10.26 -0.06 -13.14 16 29 C -0.08 -0.84 6.28 -26.85 -0.17 -1.01 16 30 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.14 1.36 8.03 -52.49 -0.42 0.94 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 38 H 0.39 3.88 8.39 -40.82 -0.34 3.54 16 39 H 0.39 5.71 8.71 -40.82 -0.36 5.35 16 40 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 41 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.27 7.01 8.29 -40.82 -0.34 6.67 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.71 7.77 -51.93 -0.40 0.30 16 LS Contribution 384.86 15.07 5.80 5.80 Total: -1.00 -34.30 384.86 -10.69 -44.99 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.12 Total: 10.03 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -4.74 Total: 1.68 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.06 Total: -53.75 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.67 Total: -22.96 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.30 -10.69 -44.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365076260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.713 kcal (2) G-P(sol) polarization free energy of solvation -34.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds