Wall clock time and date at job start Sat Apr 11 2020 07:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45202 * 109.47123 * 2 1 4 4 C 1.34802 * 117.00238 * 180.02562 * 3 2 1 5 5 O 1.21533 * 119.99753 * 359.97438 * 4 3 2 6 6 C 1.46945 * 120.00090 * 180.02562 * 4 3 2 7 7 C 1.32713 * 124.62612 * 180.02562 * 6 4 3 8 8 C 1.51109 * 110.74100 * 179.72899 * 7 6 4 9 9 C 1.54575 * 104.84707 * 16.87240 * 8 7 6 10 10 H 1.08999 * 110.98487 * 93.09684 * 9 8 7 11 11 N 1.46507 * 110.98188 * 216.85302 * 9 8 7 12 12 C 1.34781 * 119.99614 * 273.54490 * 11 9 8 13 13 O 1.21572 * 120.00157 * 359.97438 * 12 11 9 14 14 N 1.34780 * 119.99653 * 179.97438 * 12 11 9 15 15 C 1.39244 * 119.99569 * 174.84278 * 14 12 11 16 16 C 1.39684 * 119.57357 * 185.33253 * 15 14 12 17 17 C 1.38650 * 119.49717 * 179.97438 * 16 15 14 18 18 C 1.38347 * 118.66832 * 0.02562 * 17 16 15 19 19 C 1.40578 * 119.13543 * 359.97438 * 18 17 16 20 20 C 1.41326 * 119.79055 * 180.02562 * 19 18 17 21 21 H 1.08000 * 119.99954 * 359.97438 * 20 19 18 22 22 C 1.40028 * 120.00131 * 179.97438 * 20 19 18 23 23 N 1.30746 * 120.00058 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00046 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47115 * 59.99922 * 24 22 20 26 26 H 1.48503 * 109.47169 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47196 * 299.99914 * 24 22 20 28 28 N 1.31906 * 119.57672 * 5.06969 * 15 14 12 29 29 C 1.51113 * 124.63099 * 0.19206 * 6 4 3 30 30 H 1.08999 * 109.47275 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47140 * 299.99805 * 1 2 3 32 32 H 1.09001 * 109.47164 * 60.00153 * 1 2 3 33 33 H 1.08994 * 109.47290 * 239.99915 * 2 1 3 34 34 H 1.09001 * 109.47164 * 119.99847 * 2 1 3 35 35 H 1.07996 * 124.62961 * 359.97438 * 7 6 4 36 36 H 1.09004 * 110.36525 * 135.71416 * 8 7 6 37 37 H 1.09001 * 110.36813 * 257.91811 * 8 7 6 38 38 H 0.96991 * 120.00080 * 93.53991 * 11 9 8 39 39 H 0.96996 * 120.00032 * 354.84641 * 14 12 11 40 40 H 1.08004 * 120.25177 * 0.02974 * 16 15 14 41 41 H 1.07997 * 120.66440 * 179.97438 * 17 16 15 42 42 H 1.07995 * 120.43398 * 180.02562 * 18 17 16 43 43 H 0.96990 * 120.00086 * 180.02562 * 23 22 20 44 44 H 1.09005 * 110.51620 * 44.69615 * 29 6 4 45 45 H 1.08997 * 110.24833 * 282.46443 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3504 1.5457 -0.0005 5 8 4.0907 0.5818 -0.0005 6 6 3.9120 2.9035 0.0000 7 6 5.2094 3.1830 -0.0009 8 6 5.4349 4.6772 -0.0067 9 6 4.0802 5.2839 0.4245 10 1 4.0509 5.4474 1.5018 11 7 3.8084 6.5281 -0.2997 12 6 4.2837 7.6987 0.1699 13 8 4.9375 7.7221 1.1945 14 7 4.0341 8.8433 -0.4966 15 6 4.4318 10.0638 0.0428 16 6 4.0712 11.2512 -0.5985 17 6 4.4677 12.4657 -0.0598 18 6 5.2143 12.4630 1.1049 19 6 5.5453 11.2346 1.7029 20 6 6.3070 11.2157 2.8932 21 1 6.6331 12.1431 3.3403 22 6 6.6388 9.9946 3.4928 23 7 6.2436 8.8718 2.9518 24 14 7.6462 9.9696 5.0657 25 1 6.9194 10.7065 6.1307 26 1 7.8598 8.5640 5.4946 27 1 8.9596 10.6186 4.8227 28 7 5.1398 10.0841 1.1555 29 6 3.0912 4.1723 0.0053 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.9964 2.4435 -0.0018 36 1 6.2148 4.9458 0.7059 37 1 5.7031 5.0165 -1.0072 38 1 3.2865 6.5095 -1.1170 39 1 3.5773 8.8167 -1.3519 40 1 3.4873 11.2235 -1.5067 41 1 4.1997 13.3951 -0.5402 42 1 5.5378 13.3925 1.5495 43 1 6.4731 8.0260 3.3673 44 1 2.2769 4.0976 0.7261 45 1 2.6974 4.3710 -0.9914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365076260.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:48 Heat of formation + Delta-G solvation = -54.920579 kcal Electronic energy + Delta-G solvation = -29323.374611 eV Core-core repulsion = 25113.624680 eV Total energy + Delta-G solvation = -4209.749931 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65961 -41.11699 -39.91084 -38.85183 -37.62142 -35.85680 -34.78545 -34.57864 -32.65865 -32.15206 -30.94803 -29.76715 -29.01269 -27.34771 -24.98591 -24.06387 -23.19197 -23.03374 -21.91811 -21.37503 -20.04310 -19.73792 -18.79874 -18.43795 -18.06595 -17.73849 -17.60632 -16.82135 -16.37841 -16.20779 -15.84880 -15.61102 -15.23756 -15.10808 -14.71899 -14.63229 -14.17932 -14.05299 -13.87745 -13.74446 -13.63451 -13.42707 -13.04894 -12.96993 -12.86888 -12.77288 -12.69871 -12.52913 -12.48405 -12.28420 -12.26359 -11.75547 -11.67310 -11.54545 -11.45828 -10.82125 -10.80974 -10.13876 -9.87710 -9.79166 -9.06146 -8.73399 -7.98282 -6.36371 0.01133 1.01685 1.32979 1.41819 1.52608 1.56337 1.63252 1.80862 1.84588 2.29484 2.60602 3.07535 3.33858 3.36170 3.59986 3.90797 4.00589 4.06862 4.08366 4.12250 4.23832 4.33462 4.40321 4.44238 4.65024 4.72901 4.77386 4.87004 4.89120 4.91173 4.92742 5.01031 5.06109 5.11561 5.12296 5.21930 5.32947 5.35308 5.39887 5.71427 5.76745 5.90837 5.97344 6.08949 6.36779 6.47322 6.64089 6.86273 7.12317 7.32452 8.07964 8.42917 8.62278 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.002450 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.491422 B =11424.102570 C =12794.627021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.354 6.354 4 C 0.522 3.478 5 O -0.542 6.542 6 C -0.191 4.191 7 C -0.028 4.028 8 C -0.118 4.118 9 C 0.169 3.831 10 H 0.074 0.926 11 N -0.726 5.726 12 C 0.659 3.341 13 O -0.512 6.512 14 N -0.661 5.661 15 C 0.365 3.635 16 C -0.346 4.346 17 C -0.034 4.034 18 C -0.333 4.333 19 C 0.237 3.763 20 C -0.467 4.467 21 H 0.083 0.917 22 C 0.011 3.989 23 N -0.681 5.681 24 Si 0.971 3.029 25 H -0.263 1.263 26 H -0.274 1.274 27 H -0.262 1.262 28 N -0.504 5.504 29 C -0.070 4.070 30 H 0.100 0.900 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.150 0.850 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.408 0.592 39 H 0.418 0.582 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.102 0.898 43 H 0.269 0.731 44 H 0.089 0.911 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.074 -15.996 -9.346 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.370 3.630 5 O -0.434 6.434 6 C -0.192 4.192 7 C -0.047 4.047 8 C -0.156 4.156 9 C 0.063 3.937 10 H 0.092 0.908 11 N -0.386 5.386 12 C 0.357 3.643 13 O -0.379 6.379 14 N -0.311 5.311 15 C 0.125 3.875 16 C -0.372 4.372 17 C -0.058 4.058 18 C -0.356 4.356 19 C 0.111 3.889 20 C -0.497 4.497 21 H 0.101 0.899 22 C -0.215 4.215 23 N -0.299 5.299 24 Si 0.792 3.208 25 H -0.187 1.187 26 H -0.199 1.199 27 H -0.186 1.186 28 N -0.223 5.223 29 C -0.107 4.107 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.168 0.832 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.244 0.756 39 H 0.255 0.745 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.097 -17.353 -7.922 21.134 hybrid contribution 0.035 0.615 -0.400 0.735 sum -9.061 -16.738 -8.323 20.773 Atomic orbital electron populations 1.21828 0.90385 1.04407 1.03755 1.23322 0.97083 0.78971 1.02667 1.86607 1.22991 1.33783 1.83649 1.20956 0.80857 0.89476 0.71726 1.90840 1.61202 1.43311 1.48065 1.20817 0.95868 0.90949 1.11570 1.24268 0.95808 0.97564 0.87069 1.21934 0.99300 0.90844 1.03553 1.21342 0.93668 0.82265 0.96457 0.90783 1.44918 1.59591 1.04018 1.30078 1.16690 0.81887 0.81071 0.84640 1.91389 1.39242 1.84247 1.23021 1.42371 1.61440 1.03067 1.24243 1.18844 0.92344 0.84651 0.91668 1.20920 1.17811 0.91316 1.07115 1.21012 0.93708 0.97459 0.93645 1.21791 1.13447 0.97698 1.02661 1.18862 0.90277 0.86965 0.92762 1.19836 1.29260 0.94209 1.06444 0.89871 1.26989 0.97492 0.95254 1.01757 1.70531 1.28072 0.97723 1.33606 0.85451 0.79140 0.78030 0.78169 1.18708 1.19909 1.18615 1.68660 1.15656 1.27973 1.10008 1.21242 0.96965 0.88165 1.04331 0.88122 0.91466 0.91093 0.91000 0.91410 0.83212 0.90691 0.87844 0.75573 0.74493 0.85015 0.84646 0.87997 0.92019 0.89200 0.87347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.29 71.98 0.74 -0.62 16 2 C 0.05 0.79 6.20 71.98 0.45 1.24 16 3 O -0.35 -7.05 10.04 -57.14 -0.57 -7.62 16 4 C 0.52 12.04 7.94 70.10 0.56 12.60 16 5 O -0.54 -15.15 16.56 19.73 0.33 -14.83 16 6 C -0.19 -3.90 6.09 -18.62 -0.11 -4.02 16 7 C -0.03 -0.57 10.43 24.64 0.26 -0.32 16 8 C -0.12 -2.72 6.53 30.51 0.20 -2.53 16 9 C 0.17 4.15 3.41 46.06 0.16 4.31 16 10 H 0.07 2.31 7.73 -2.39 -0.02 2.29 16 11 N -0.73 -18.59 5.19 -452.69 -2.35 -20.94 16 12 C 0.66 25.43 8.52 179.05 1.53 26.96 16 13 O -0.51 -25.81 11.84 -3.94 -0.05 -25.86 16 14 N -0.66 -24.40 5.39 -322.12 -1.74 -26.14 16 15 C 0.36 17.39 7.43 133.26 0.99 18.38 16 16 C -0.35 -14.51 9.95 22.72 0.23 -14.28 16 17 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 18 C -0.33 -16.87 9.83 22.87 0.22 -16.64 16 19 C 0.24 13.72 6.55 40.19 0.26 13.98 16 20 C -0.47 -26.73 9.14 23.46 0.21 -26.51 16 21 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 22 C 0.01 0.61 5.50 85.29 0.47 1.08 16 23 N -0.68 -39.06 8.98 21.84 0.20 -38.87 16 24 Si 0.97 40.98 29.56 68.60 2.03 43.01 16 25 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 26 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 27 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 28 N -0.50 -28.74 5.73 -186.37 -1.07 -29.81 16 29 C -0.07 -1.25 6.28 30.52 0.19 -1.06 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.15 2.79 8.03 -2.91 -0.02 2.77 16 36 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.10 2.22 8.08 -2.39 -0.02 2.20 16 38 H 0.41 7.02 8.39 -92.72 -0.78 6.25 16 39 H 0.42 10.91 8.71 -92.71 -0.81 10.10 16 40 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 41 H 0.14 4.68 8.06 -2.91 -0.02 4.65 16 42 H 0.10 4.84 8.06 -2.91 -0.02 4.81 16 43 H 0.27 14.62 8.29 -92.72 -0.77 13.85 16 44 H 0.09 1.59 8.14 -2.38 -0.02 1.58 16 45 H 0.11 1.46 7.77 -2.39 -0.02 1.44 16 Total: -1.00 -78.42 384.86 2.81 -75.61 By element: Atomic # 1 Polarization: 34.65 SS G_CDS: -0.54 Total: 34.11 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: 6.57 Total: 11.32 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -4.96 Total: -115.75 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -0.29 Total: -48.30 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -78.42 2.81 -75.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365076260.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.694 kcal (2) G-P(sol) polarization free energy of solvation -78.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds