Wall clock time and date at job start Sat Apr 11 2020 07:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46888 * 2 1 4 4 C 1.35844 * 116.99790 * 179.97438 * 3 2 1 5 5 C 1.38779 * 119.92679 * 0.02562 * 4 3 2 6 6 C 1.37827 * 120.16453 * 179.97438 * 5 4 3 7 7 C 1.39742 * 120.03086 * 359.71998 * 6 5 4 8 8 C 1.43202 * 120.07500 * 180.29837 * 7 6 5 9 9 N 7.45783 * 162.72032 * 359.50830 * 2 1 3 10 10 C 1.39724 * 119.85576 * 0.55441 * 7 6 5 11 11 C 1.38305 * 119.83064 * 359.44689 * 10 7 6 12 12 N 1.40188 * 120.01369 * 180.25521 * 11 10 7 13 13 C 1.34774 * 119.99965 * 24.80021 * 12 11 10 14 14 O 1.21589 * 119.99788 * 5.64109 * 13 12 11 15 15 N 1.34780 * 119.99709 * 185.63762 * 13 12 11 16 16 C 1.47418 * 125.65072 * 359.69099 * 15 13 12 17 17 C 1.55126 * 104.72331 * 155.81562 * 16 15 13 18 18 C 1.55164 * 101.48482 * 37.29793 * 17 16 15 19 19 O 1.42898 * 110.71922 * 82.69424 * 18 17 16 20 20 C 1.50698 * 110.87168 * 205.89698 * 18 17 16 21 21 H 1.07995 * 120.00338 * 355.06544 * 20 18 17 22 22 C 1.37880 * 119.99958 * 175.06249 * 20 18 17 23 23 N 1.31515 * 119.99754 * 359.97438 * 22 20 18 24 24 Si 1.86791 * 120.00156 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47221 * 89.99851 * 24 22 20 26 26 H 1.48502 * 109.47504 * 209.99976 * 24 22 20 27 27 H 1.48496 * 109.47434 * 330.00214 * 24 22 20 28 28 C 1.47017 * 125.64489 * 180.02562 * 15 13 12 29 29 H 1.09001 * 109.47269 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47781 * 300.00529 * 1 2 3 31 31 H 1.09003 * 109.46669 * 60.00553 * 1 2 3 32 32 H 1.08997 * 109.47781 * 239.99471 * 2 1 3 33 33 H 1.09003 * 109.46669 * 119.99446 * 2 1 3 34 34 H 1.07994 * 119.91522 * 359.97438 * 5 4 3 35 35 H 1.08000 * 119.98634 * 179.97438 * 6 5 4 36 36 H 1.08002 * 120.08233 * 179.71901 * 10 7 6 37 37 H 0.97002 * 119.99560 * 204.80105 * 12 11 10 38 38 H 1.09001 * 110.36814 * 274.74952 * 16 15 13 39 39 H 1.09000 * 110.36662 * 37.07293 * 16 15 13 40 40 H 1.09004 * 111.19748 * 279.19587 * 17 16 15 41 41 H 1.09004 * 110.90819 * 155.27434 * 17 16 15 42 42 H 0.96703 * 113.99933 * 185.02434 * 19 18 17 43 43 H 0.97003 * 119.99975 * 179.97438 * 23 22 20 44 44 H 1.09008 * 109.88498 * 300.43845 * 28 15 13 45 45 H 1.09001 * 109.88810 * 61.44830 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3530 1.5253 0.0005 5 6 4.1970 0.4236 0.0005 6 6 5.5641 0.5986 0.0005 7 6 6.1043 1.8873 -0.0053 8 6 7.5245 2.0702 -0.0118 9 7 8.6512 2.2152 -0.0190 10 6 5.2556 2.9973 0.0005 11 6 3.8846 2.8150 0.0005 12 7 3.0295 3.9259 0.0009 13 6 3.4581 5.1064 -0.4882 14 8 4.5475 5.1834 -1.0228 15 7 2.6791 6.2014 -0.3849 16 6 1.3403 6.2484 0.2304 17 6 1.1549 7.7279 0.6585 18 6 1.8451 8.4770 -0.5119 19 8 0.9525 8.6166 -1.6191 20 6 2.3501 9.8243 -0.0636 21 1 2.1361 10.1763 0.9346 22 6 3.0853 10.6074 -0.9280 23 7 3.3464 10.1784 -2.1435 24 14 3.7119 12.2770 -0.3721 25 1 5.0571 12.1229 0.2378 26 1 3.8002 13.1873 -1.5421 27 1 2.7767 12.8482 0.6299 28 6 3.0210 7.5453 -0.8732 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.7814 -0.5732 0.0005 35 1 6.2182 -0.2608 0.0009 36 1 5.6691 3.9950 0.0006 37 1 2.1294 3.8450 0.3533 38 1 0.5789 5.9629 -0.4955 39 1 1.2998 5.5941 1.1012 40 1 1.6589 7.9308 1.6035 41 1 0.0976 7.9860 0.7182 42 1 1.3581 9.0093 -2.4043 43 1 3.8633 10.7296 -2.7518 44 1 3.9330 7.8948 -0.3890 45 1 3.1607 7.5226 -1.9540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365482958.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:55 Heat of formation + Delta-G solvation = -48.983048 kcal Electronic energy + Delta-G solvation = -29986.225112 eV Core-core repulsion = 25776.732651 eV Total energy + Delta-G solvation = -4209.492460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.99962 -39.68927 -38.24066 -37.49439 -36.18401 -34.60268 -34.35308 -32.25825 -32.17868 -30.80567 -30.23042 -29.13587 -27.78375 -25.22678 -24.69363 -23.44143 -22.96891 -22.01838 -19.85641 -19.57892 -19.22026 -18.49790 -17.64531 -17.13999 -16.51384 -16.30568 -16.10922 -15.44830 -15.09118 -14.68179 -14.52307 -14.37915 -14.12391 -13.97108 -13.77370 -13.51630 -13.32453 -12.98344 -12.98136 -12.89784 -12.71781 -12.42294 -12.32964 -12.16749 -11.97167 -11.72321 -11.53480 -11.41568 -11.07186 -11.02024 -10.86240 -10.73337 -10.53493 -10.51494 -10.20821 -9.68245 -9.37020 -8.81069 -8.71041 -8.37257 -8.15101 -7.73868 -6.31139 -4.39893 0.67245 1.10683 2.61244 2.73336 2.76750 2.90686 3.20707 3.28483 3.30665 3.46967 3.83324 3.85005 4.18297 4.27106 4.45691 4.55072 4.61444 4.73779 4.85676 4.95196 4.96705 5.17848 5.27211 5.31159 5.42601 5.52139 5.61159 5.66229 5.70859 5.74328 5.87872 5.93335 6.01966 6.10619 6.30173 6.43765 6.61691 6.66259 6.80635 6.85634 7.09099 7.13891 7.24646 7.45279 7.49696 7.70314 7.98868 8.26844 8.63427 8.83529 9.25605 9.34841 10.76642 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011875 B = 0.002982 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.333968 B = 9388.557958 C =11353.859361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.055 3.945 3 O -0.313 6.313 4 C 0.122 3.878 5 C -0.190 4.190 6 C -0.057 4.057 7 C -0.046 4.046 8 C 0.265 3.735 9 N -0.426 5.426 10 C -0.052 4.052 11 C 0.156 3.844 12 N -0.679 5.679 13 C 0.713 3.287 14 O -0.579 6.579 15 N -0.621 5.621 16 C 0.098 3.902 17 C -0.115 4.115 18 C 0.249 3.751 19 O -0.585 6.585 20 C -0.538 4.538 21 H 0.067 0.933 22 C 0.071 3.929 23 N -0.893 5.893 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.272 1.272 28 C 0.121 3.879 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.167 0.833 37 H 0.411 0.589 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.383 0.617 43 H 0.271 0.729 44 H 0.068 0.932 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 -21.497 5.559 23.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.020 4.020 3 O -0.226 6.226 4 C 0.073 3.927 5 C -0.209 4.209 6 C -0.079 4.079 7 C -0.050 4.050 8 C -0.050 4.050 9 N -0.101 5.101 10 C -0.075 4.075 11 C 0.059 3.941 12 N -0.326 5.326 13 C 0.416 3.584 14 O -0.457 6.457 15 N -0.357 5.357 16 C -0.025 4.025 17 C -0.153 4.153 18 C 0.208 3.792 19 O -0.393 6.393 20 C -0.577 4.577 21 H 0.085 0.915 22 C -0.132 4.132 23 N -0.531 5.531 24 Si 0.731 3.269 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.001 4.001 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.184 0.816 37 H 0.247 0.753 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.233 0.767 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.033 -21.213 5.392 22.256 hybrid contribution -0.043 0.778 -0.098 0.786 sum -4.076 -20.434 5.294 21.499 Atomic orbital electron populations 1.21791 0.92544 1.02938 1.03832 1.22842 0.96034 0.81504 1.01610 1.86027 1.18320 1.29879 1.88378 1.18837 0.82949 0.92319 0.98615 1.20865 0.93313 0.97743 1.09010 1.20818 0.94506 0.95390 0.97200 1.15746 0.84657 0.94024 1.10601 1.25543 0.92489 0.93582 0.93414 1.81227 1.12149 1.07321 1.09428 1.21442 0.90306 1.00392 0.95363 1.16625 0.89507 0.83615 1.04371 1.42577 1.17143 1.07793 1.65094 1.15487 0.84050 0.79402 0.79498 1.90864 1.21261 1.84053 1.49525 1.48033 1.17967 1.09077 1.60623 1.22382 0.84542 0.99224 0.96316 1.22764 1.01586 0.91863 0.99085 1.19507 0.84391 0.91799 0.83503 1.86107 1.41843 1.85485 1.25910 1.21473 1.34398 1.01583 1.00206 0.91493 1.25072 0.94705 0.98677 0.94792 1.69690 1.39288 1.38167 1.06002 0.86400 0.79228 0.82913 0.78371 1.20400 1.20983 1.19688 1.22991 1.00871 0.76887 0.99350 0.90317 0.91366 0.91306 0.91712 0.91740 0.84246 0.84811 0.81581 0.75254 0.91564 0.92320 0.90333 0.90431 0.76693 0.91937 0.91397 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.06 0.32 5.46 37.16 0.20 0.53 16 3 O -0.31 -2.96 9.53 -19.25 -0.18 -3.14 16 4 C 0.12 1.28 6.71 -38.91 -0.26 1.02 16 5 C -0.19 -1.55 9.01 -39.53 -0.36 -1.91 16 6 C -0.06 -0.51 9.74 -39.17 -0.38 -0.89 16 7 C -0.05 -0.55 5.74 -106.85 -0.61 -1.16 16 8 C 0.26 3.64 15.33 -22.47 -0.34 3.30 16 9 N -0.43 -6.72 18.54 41.84 0.78 -5.95 16 10 C -0.05 -0.73 8.42 -39.00 -0.33 -1.06 16 11 C 0.16 2.09 6.44 -83.54 -0.54 1.55 16 12 N -0.68 -9.88 5.23 -14.14 -0.07 -9.95 16 13 C 0.71 13.49 8.29 -86.92 -0.72 12.76 16 14 O -0.58 -12.79 13.84 5.29 0.07 -12.71 16 15 N -0.62 -12.07 3.32 -176.10 -0.59 -12.66 16 16 C 0.10 1.59 6.53 -2.41 -0.02 1.58 16 17 C -0.12 -2.15 6.24 -24.46 -0.15 -2.30 16 18 C 0.25 5.75 0.85 -89.93 -0.08 5.68 16 19 O -0.58 -14.12 13.07 -35.23 -0.46 -14.58 16 20 C -0.54 -13.67 8.13 -34.44 -0.28 -13.95 16 21 H 0.07 1.67 7.78 -52.49 -0.41 1.26 16 22 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 23 N -0.89 -23.37 10.96 55.43 0.61 -22.76 16 24 Si 0.90 20.22 29.54 -169.99 -5.02 15.19 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 C 0.12 2.81 5.23 -3.07 -0.02 2.79 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 33 H 0.06 0.28 7.65 -51.93 -0.40 -0.11 16 34 H 0.14 0.71 6.27 -52.49 -0.33 0.38 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.17 2.82 5.78 -52.49 -0.30 2.52 16 37 H 0.41 5.07 6.88 -40.82 -0.28 4.79 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.75 7.38 -51.93 -0.38 0.36 16 40 H 0.08 1.41 8.05 -51.93 -0.42 1.00 16 41 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.38 9.53 7.45 45.56 0.34 9.87 16 43 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 44 H 0.07 1.74 7.82 -51.92 -0.41 1.33 16 45 H 0.07 1.70 7.92 -51.93 -0.41 1.29 16 LS Contribution 380.75 15.07 5.74 5.74 Total: -1.00 -30.37 380.75 -7.79 -38.16 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -5.07 Total: 13.37 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: -3.59 Total: 9.30 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.72 Total: -51.32 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.57 Total: -30.43 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.37 -7.79 -38.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365482958.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.826 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds