Wall clock time and date at job start Sat Apr 11 2020 07:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46841 * 2 1 4 4 C 1.35839 * 116.99738 * 180.02562 * 3 2 1 5 5 C 1.38786 * 119.92922 * 0.21619 * 4 3 2 6 6 C 1.37834 * 120.16542 * 180.24965 * 5 4 3 7 7 C 1.39742 * 120.02679 * 359.79278 * 6 5 4 8 8 C 1.43197 * 120.06407 * 179.97438 * 7 6 5 9 9 N 7.45786 * 162.72131 * 0.45231 * 2 1 3 10 10 C 1.39705 * 119.86183 * 359.97392 * 7 6 5 11 11 C 1.38320 * 119.83412 * 0.02562 * 10 7 6 12 12 N 1.40180 * 120.01453 * 179.97438 * 11 10 7 13 13 C 1.34782 * 120.00263 * 34.68353 * 12 11 10 14 14 O 1.21593 * 119.99498 * 355.51862 * 13 12 11 15 15 N 1.34771 * 119.99931 * 175.52101 * 13 12 11 16 16 C 1.47020 * 125.65170 * 359.97438 * 15 13 12 17 17 C 1.54324 * 107.27247 * 178.99922 * 16 15 13 18 18 C 1.55164 * 102.94157 * 337.80258 * 17 16 15 19 19 O 1.42896 * 111.00281 * 277.39248 * 18 17 16 20 20 C 1.50702 * 111.00120 * 153.57725 * 18 17 16 21 21 H 1.07992 * 120.00095 * 3.17917 * 20 18 17 22 22 C 1.37882 * 119.99383 * 182.90641 * 20 18 17 23 23 N 1.31507 * 120.00071 * 0.27620 * 22 20 18 24 24 Si 1.86797 * 119.99619 * 180.27833 * 22 20 18 25 25 H 1.48505 * 109.47212 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47349 * 119.99846 * 24 22 20 27 27 H 1.48502 * 109.47255 * 239.99860 * 24 22 20 28 28 C 1.47468 * 125.62687 * 179.97438 * 15 13 12 29 29 H 1.08997 * 109.47129 * 59.99575 * 1 2 3 30 30 H 1.08998 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46730 * 299.99613 * 1 2 3 32 32 H 1.09000 * 109.46859 * 240.00921 * 2 1 3 33 33 H 1.08990 * 109.47420 * 120.00189 * 2 1 3 34 34 H 1.07993 * 119.91368 * 0.02562 * 5 4 3 35 35 H 1.08003 * 119.97946 * 179.76464 * 6 5 4 36 36 H 1.07998 * 120.08457 * 179.97438 * 10 7 6 37 37 H 0.97000 * 119.99832 * 214.67998 * 12 11 10 38 38 H 1.08990 * 109.88568 * 59.57603 * 16 15 13 39 39 H 1.09006 * 109.87910 * 298.41151 * 16 15 13 40 40 H 1.08998 * 110.72201 * 219.44112 * 17 16 15 41 41 H 1.08994 * 110.72270 * 96.16769 * 17 16 15 42 42 H 0.96705 * 113.99402 * 176.81992 * 19 18 17 43 43 H 0.97003 * 119.99887 * 180.02562 * 23 22 20 44 44 H 1.09004 * 110.35127 * 85.22772 * 28 15 13 45 45 H 1.09001 * 110.40860 * 322.89795 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3530 1.5253 -0.0005 5 6 4.1971 0.4236 -0.0056 6 6 5.5643 0.5986 -0.0010 7 6 6.1043 1.8874 0.0044 8 6 7.5246 2.0701 0.0098 9 7 8.6513 2.2151 0.0175 10 6 5.2557 2.9972 0.0046 11 6 3.8846 2.8150 0.0000 12 7 3.0296 3.9259 0.0007 13 6 3.3811 5.0474 -0.6592 14 8 4.4741 5.1252 -1.1863 15 7 2.5212 6.0824 -0.7346 16 6 1.1745 6.1222 -0.1463 17 6 0.5757 7.5082 -0.4657 18 6 1.8336 8.3779 -0.7284 19 8 2.3980 8.8458 0.4981 20 6 1.5119 9.5295 -1.6457 21 1 0.4976 9.6849 -1.9822 22 6 2.5119 10.3881 -2.0509 23 7 3.7471 10.1988 -1.6412 24 14 2.1119 11.8201 -3.1817 25 1 0.6606 11.8122 -3.4961 26 1 2.4662 13.0958 -2.5092 27 1 2.8910 11.6904 -4.4392 28 6 2.7759 7.3624 -1.4211 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.7816 -0.5731 -0.0095 35 1 6.2183 -0.2609 -0.0011 36 1 5.6692 3.9949 0.0092 37 1 2.1849 3.8875 0.4760 38 1 1.2372 5.9852 0.9331 39 1 0.5547 5.3405 -0.5859 40 1 0.0133 7.8909 0.3860 41 1 -0.0531 7.4612 -1.3547 42 1 3.2137 9.3533 0.3873 43 1 4.4505 10.8031 -1.9259 44 1 2.5316 7.2798 -2.4802 45 1 3.8161 7.6619 -1.2933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365482959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:58 Heat of formation + Delta-G solvation = -50.815767 kcal Electronic energy + Delta-G solvation = -30024.430191 eV Core-core repulsion = 25814.858258 eV Total energy + Delta-G solvation = -4209.571933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95751 -39.64194 -38.23041 -37.44824 -36.17372 -34.54876 -34.29826 -32.21245 -32.17697 -30.82114 -30.26008 -29.12461 -27.79027 -25.21388 -24.67669 -23.44667 -22.92546 -21.96031 -19.78411 -19.61819 -19.17182 -18.49088 -17.64300 -17.13057 -16.51282 -16.27459 -16.12541 -15.31890 -15.06982 -14.68249 -14.57121 -14.32187 -14.14068 -14.00924 -13.78074 -13.50337 -13.32571 -13.07868 -12.98108 -12.86818 -12.71570 -12.36253 -12.19048 -12.13230 -12.01124 -11.66569 -11.55012 -11.40227 -11.07638 -11.01678 -10.84806 -10.64917 -10.48663 -10.38256 -10.19716 -9.69991 -9.42169 -8.82136 -8.72138 -8.42657 -8.10369 -7.70783 -6.30845 -4.40471 0.67136 1.09663 2.62581 2.74913 2.77119 2.94509 3.19060 3.28139 3.30917 3.50960 3.80674 3.87280 4.20640 4.28705 4.46143 4.55140 4.62629 4.73532 4.85834 4.94254 4.96462 5.18283 5.31184 5.34318 5.42668 5.56024 5.59325 5.65747 5.70918 5.76796 5.87242 5.96487 6.05138 6.10242 6.31475 6.45628 6.64081 6.66523 6.81527 6.84187 7.10643 7.14827 7.27102 7.46150 7.49924 7.71961 7.98255 8.31973 8.63456 8.89327 9.28642 9.38549 10.76381 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.002940 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.929179 B = 9522.929546 C =11335.163044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.054 3.946 3 O -0.310 6.310 4 C 0.129 3.871 5 C -0.194 4.194 6 C -0.052 4.052 7 C -0.050 4.050 8 C 0.265 3.735 9 N -0.426 5.426 10 C -0.039 4.039 11 C 0.150 3.850 12 N -0.681 5.681 13 C 0.715 3.285 14 O -0.581 6.581 15 N -0.620 5.620 16 C 0.102 3.898 17 C -0.116 4.116 18 C 0.249 3.751 19 O -0.583 6.583 20 C -0.538 4.538 21 H 0.068 0.932 22 C 0.071 3.929 23 N -0.892 5.892 24 Si 0.904 3.096 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.112 3.888 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.161 0.839 37 H 0.410 0.590 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.384 0.616 43 H 0.271 0.729 44 H 0.060 0.940 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 -21.488 4.805 22.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 O -0.224 6.224 4 C 0.079 3.921 5 C -0.214 4.214 6 C -0.073 4.073 7 C -0.055 4.055 8 C -0.050 4.050 9 N -0.101 5.101 10 C -0.062 4.062 11 C 0.053 3.947 12 N -0.330 5.330 13 C 0.418 3.582 14 O -0.460 6.460 15 N -0.355 5.355 16 C -0.022 4.022 17 C -0.153 4.153 18 C 0.208 3.792 19 O -0.393 6.393 20 C -0.576 4.576 21 H 0.086 0.914 22 C -0.132 4.132 23 N -0.531 5.531 24 Si 0.731 3.269 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.010 4.010 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.178 0.822 37 H 0.246 0.754 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.235 0.765 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.552 -21.246 4.633 22.217 hybrid contribution -0.476 0.713 -0.710 1.113 sum -5.029 -20.533 3.923 21.501 Atomic orbital electron populations 1.21787 0.92541 1.02920 1.03824 1.22852 0.96061 0.81562 1.01608 1.86053 1.18319 1.29793 1.88195 1.18969 0.82941 0.92490 0.97651 1.20886 0.93333 0.97791 1.09348 1.20835 0.94509 0.95390 0.96604 1.15741 0.84667 0.94042 1.11001 1.25541 0.92484 0.93616 0.93404 1.81233 1.12127 1.07286 1.09469 1.21319 0.90439 0.99976 0.94438 1.16573 0.89374 0.83630 1.05077 1.42517 1.23318 1.11881 1.55244 1.15489 0.83973 0.79334 0.79450 1.90891 1.21211 1.81185 1.52665 1.47960 1.15348 1.15896 1.56301 1.22011 0.83501 0.99352 0.97305 1.22597 0.98591 0.92389 1.01762 1.19624 0.87066 0.89810 0.82726 1.86081 1.45885 1.74864 1.32428 1.21500 0.95472 1.11249 1.29405 0.91406 1.25084 0.94785 0.97774 0.95590 1.69650 1.00392 1.38144 1.44926 0.86345 0.78659 0.81677 0.80195 1.19578 1.20751 1.20757 1.23254 1.03327 0.79025 0.95385 0.91328 0.90327 0.91358 0.91719 0.91727 0.84238 0.84761 0.82152 0.75411 0.92385 0.92725 0.90628 0.90333 0.76486 0.91937 0.92153 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 37.16 0.38 -0.38 16 2 C 0.05 0.32 5.46 37.16 0.20 0.52 16 3 O -0.31 -2.98 9.67 -19.24 -0.19 -3.17 16 4 C 0.13 1.37 6.71 -38.91 -0.26 1.11 16 5 C -0.19 -1.59 9.01 -39.53 -0.36 -1.95 16 6 C -0.05 -0.46 9.74 -39.17 -0.38 -0.84 16 7 C -0.05 -0.60 5.74 -106.86 -0.61 -1.21 16 8 C 0.26 3.63 15.32 -22.47 -0.34 3.29 16 9 N -0.43 -6.71 18.54 41.84 0.78 -5.94 16 10 C -0.04 -0.55 8.40 -39.00 -0.33 -0.87 16 11 C 0.15 2.03 6.32 -83.54 -0.53 1.50 16 12 N -0.68 -10.09 5.15 -14.14 -0.07 -10.16 16 13 C 0.71 13.75 8.33 -86.92 -0.72 13.02 16 14 O -0.58 -13.03 14.02 5.28 0.07 -12.96 16 15 N -0.62 -12.18 3.33 -176.21 -0.59 -12.76 16 16 C 0.10 1.66 6.16 -3.06 -0.02 1.64 16 17 C -0.12 -2.16 6.13 -24.89 -0.15 -2.31 16 18 C 0.25 5.79 0.88 -89.63 -0.08 5.71 16 19 O -0.58 -14.45 13.17 -35.23 -0.46 -14.91 16 20 C -0.54 -13.58 8.25 -34.44 -0.28 -13.87 16 21 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 22 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 23 N -0.89 -23.41 10.69 55.43 0.59 -22.82 16 24 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 C 0.11 2.59 5.51 -2.51 -0.01 2.58 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.32 7.64 -51.93 -0.40 -0.07 16 33 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 34 H 0.14 0.72 6.27 -52.49 -0.33 0.39 16 35 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 36 H 0.16 2.71 6.19 -52.49 -0.32 2.39 16 37 H 0.41 5.16 7.54 -40.82 -0.31 4.86 16 38 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.08 1.38 8.03 -51.93 -0.42 0.97 16 42 H 0.38 9.91 7.24 45.56 0.33 10.24 16 43 H 0.27 6.83 8.31 -40.82 -0.34 6.50 16 44 H 0.06 1.45 8.03 -51.93 -0.42 1.03 16 45 H 0.09 2.25 7.48 -51.93 -0.39 1.86 16 LS Contribution 382.02 15.07 5.76 5.76 Total: -1.00 -30.54 382.02 -7.88 -38.41 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.15 Total: 13.88 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -3.59 Total: 9.66 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.71 Total: -51.68 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.58 Total: -31.04 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.54 -7.88 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365482959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.405 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds