Wall clock time and date at job start Sat Apr 11 2020 07:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46841 * 2 1 4 4 C 1.35839 * 116.99738 * 180.02562 * 3 2 1 5 5 C 1.38786 * 119.92922 * 0.21619 * 4 3 2 6 6 C 1.37834 * 120.16542 * 180.24965 * 5 4 3 7 7 C 1.39742 * 120.02679 * 359.79278 * 6 5 4 8 8 C 1.43197 * 120.06407 * 179.97438 * 7 6 5 9 9 N 7.45786 * 162.72131 * 0.45231 * 2 1 3 10 10 C 1.39705 * 119.86183 * 359.97392 * 7 6 5 11 11 C 1.38320 * 119.83412 * 0.02562 * 10 7 6 12 12 N 1.40180 * 120.01453 * 179.97438 * 11 10 7 13 13 C 1.34782 * 120.00263 * 34.68353 * 12 11 10 14 14 O 1.21593 * 119.99498 * 355.51862 * 13 12 11 15 15 N 1.34771 * 119.99931 * 175.52101 * 13 12 11 16 16 C 1.47020 * 125.65170 * 359.97438 * 15 13 12 17 17 C 1.54324 * 107.27247 * 178.99922 * 16 15 13 18 18 C 1.55164 * 102.94157 * 337.80258 * 17 16 15 19 19 O 1.42896 * 111.00281 * 277.39248 * 18 17 16 20 20 C 1.50702 * 111.00120 * 153.57725 * 18 17 16 21 21 H 1.07992 * 120.00095 * 3.17917 * 20 18 17 22 22 C 1.37882 * 119.99383 * 182.90641 * 20 18 17 23 23 N 1.31507 * 120.00071 * 0.27620 * 22 20 18 24 24 Si 1.86797 * 119.99619 * 180.27833 * 22 20 18 25 25 H 1.48505 * 109.47212 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47349 * 119.99846 * 24 22 20 27 27 H 1.48502 * 109.47255 * 239.99860 * 24 22 20 28 28 C 1.47468 * 125.62687 * 179.97438 * 15 13 12 29 29 H 1.08997 * 109.47129 * 59.99575 * 1 2 3 30 30 H 1.08998 * 109.46888 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46730 * 299.99613 * 1 2 3 32 32 H 1.09000 * 109.46859 * 240.00921 * 2 1 3 33 33 H 1.08990 * 109.47420 * 120.00189 * 2 1 3 34 34 H 1.07993 * 119.91368 * 0.02562 * 5 4 3 35 35 H 1.08003 * 119.97946 * 179.76464 * 6 5 4 36 36 H 1.07998 * 120.08457 * 179.97438 * 10 7 6 37 37 H 0.97000 * 119.99832 * 214.67998 * 12 11 10 38 38 H 1.08990 * 109.88568 * 59.57603 * 16 15 13 39 39 H 1.09006 * 109.87910 * 298.41151 * 16 15 13 40 40 H 1.08998 * 110.72201 * 219.44112 * 17 16 15 41 41 H 1.08994 * 110.72270 * 96.16769 * 17 16 15 42 42 H 0.96705 * 113.99402 * 176.81992 * 19 18 17 43 43 H 0.97003 * 119.99887 * 180.02562 * 23 22 20 44 44 H 1.09004 * 110.35127 * 85.22772 * 28 15 13 45 45 H 1.09001 * 110.40860 * 322.89795 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3530 1.5253 -0.0005 5 6 4.1971 0.4236 -0.0056 6 6 5.5643 0.5986 -0.0010 7 6 6.1043 1.8874 0.0044 8 6 7.5246 2.0701 0.0098 9 7 8.6513 2.2151 0.0175 10 6 5.2557 2.9972 0.0046 11 6 3.8846 2.8150 0.0000 12 7 3.0296 3.9259 0.0007 13 6 3.3811 5.0474 -0.6592 14 8 4.4741 5.1252 -1.1863 15 7 2.5212 6.0824 -0.7346 16 6 1.1745 6.1222 -0.1463 17 6 0.5757 7.5082 -0.4657 18 6 1.8336 8.3779 -0.7284 19 8 2.3980 8.8458 0.4981 20 6 1.5119 9.5295 -1.6457 21 1 0.4976 9.6849 -1.9822 22 6 2.5119 10.3881 -2.0509 23 7 3.7471 10.1988 -1.6412 24 14 2.1119 11.8201 -3.1817 25 1 0.6606 11.8122 -3.4961 26 1 2.4662 13.0958 -2.5092 27 1 2.8910 11.6904 -4.4392 28 6 2.7759 7.3624 -1.4211 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.7816 -0.5731 -0.0095 35 1 6.2183 -0.2609 -0.0011 36 1 5.6692 3.9949 0.0092 37 1 2.1849 3.8875 0.4760 38 1 1.2372 5.9852 0.9331 39 1 0.5547 5.3405 -0.5859 40 1 0.0133 7.8909 0.3860 41 1 -0.0531 7.4612 -1.3547 42 1 3.2137 9.3533 0.3873 43 1 4.4505 10.8031 -1.9259 44 1 2.5316 7.2798 -2.4802 45 1 3.8161 7.6619 -1.2933 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365482959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:57 Heat of formation + Delta-G solvation = -71.965800 kcal Electronic energy + Delta-G solvation = -30025.347325 eV Core-core repulsion = 25814.858258 eV Total energy + Delta-G solvation = -4210.489067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.01871 -40.86780 -39.34479 -38.80225 -37.29451 -36.10885 -35.71390 -34.18445 -32.72070 -32.11365 -31.28498 -30.25485 -29.46250 -26.98994 -25.44583 -24.59958 -23.99552 -22.88377 -21.48314 -20.94809 -20.30859 -19.27590 -19.14602 -18.80458 -17.44172 -17.31171 -16.98912 -16.96370 -16.68782 -16.19010 -15.87855 -15.46670 -15.20581 -15.00177 -14.93658 -14.73922 -14.64841 -14.53751 -14.12636 -13.84738 -13.71250 -13.50377 -13.39329 -13.33884 -13.11931 -12.95414 -12.85994 -12.77795 -12.49421 -12.31470 -12.19524 -12.08531 -12.01768 -11.56712 -11.49563 -11.24889 -11.12202 -10.66084 -10.32129 -9.77788 -9.49454 -8.86481 -8.24904 -6.41637 -0.22682 0.21343 1.39988 1.44386 1.46969 1.55580 1.63480 1.78099 2.09816 2.14554 2.38499 2.80974 2.84114 3.01257 3.01930 3.77360 3.80202 3.91337 4.07548 4.11339 4.17647 4.21149 4.26018 4.32965 4.39856 4.51315 4.62819 4.68054 4.76083 4.77801 4.96630 5.06036 5.07301 5.08755 5.10344 5.25453 5.27348 5.36366 5.38567 5.39566 5.46742 5.64917 5.76962 6.00165 6.10206 6.35544 6.43685 6.65845 6.92474 7.29878 7.36847 7.43921 8.80475 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012166 B = 0.002940 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.929179 B = 9522.929546 C =11335.163044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.042 3.958 3 O -0.323 6.323 4 C 0.147 3.853 5 C -0.179 4.179 6 C -0.025 4.025 7 C -0.066 4.066 8 C 0.283 3.717 9 N -0.471 5.471 10 C -0.055 4.055 11 C 0.116 3.884 12 N -0.663 5.663 13 C 0.711 3.289 14 O -0.624 6.624 15 N -0.626 5.626 16 C 0.104 3.896 17 C -0.109 4.109 18 C 0.231 3.769 19 O -0.588 6.588 20 C -0.553 4.553 21 H 0.071 0.929 22 C 0.025 3.975 23 N -0.917 5.917 24 Si 0.964 3.036 25 H -0.262 1.262 26 H -0.281 1.281 27 H -0.284 1.284 28 C 0.128 3.872 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.185 0.815 35 H 0.171 0.829 36 H 0.120 0.880 37 H 0.421 0.579 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.090 0.910 42 H 0.375 0.625 43 H 0.269 0.731 44 H 0.043 0.957 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.158 -25.100 5.181 27.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.032 4.032 3 O -0.236 6.236 4 C 0.097 3.903 5 C -0.198 4.198 6 C -0.046 4.046 7 C -0.070 4.070 8 C -0.031 4.031 9 N -0.147 5.147 10 C -0.078 4.078 11 C 0.020 3.980 12 N -0.313 5.313 13 C 0.413 3.587 14 O -0.505 6.505 15 N -0.362 5.362 16 C -0.018 4.018 17 C -0.147 4.147 18 C 0.191 3.809 19 O -0.396 6.396 20 C -0.591 4.591 21 H 0.089 0.911 22 C -0.176 4.176 23 N -0.557 5.557 24 Si 0.789 3.211 25 H -0.185 1.185 26 H -0.207 1.207 27 H -0.210 1.210 28 C 0.004 3.996 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.202 0.798 35 H 0.189 0.811 36 H 0.138 0.862 37 H 0.260 0.740 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.224 0.776 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.194 -24.919 5.046 26.423 hybrid contribution 0.250 1.693 -0.803 1.891 sum -6.944 -23.226 4.243 24.610 Atomic orbital electron populations 1.21826 0.92051 1.04145 1.03023 1.23246 0.96536 0.79912 1.03478 1.86062 1.17448 1.32513 1.87601 1.18970 0.84021 0.91623 0.95707 1.21349 0.92524 0.98882 1.07036 1.21251 0.95437 0.94702 0.93168 1.15776 0.83249 0.94991 1.13002 1.25864 0.92776 0.92370 0.92090 1.81235 1.13488 1.08602 1.11406 1.21000 0.91497 0.99010 0.96321 1.16729 0.88916 0.84394 1.07954 1.42176 1.23836 1.10952 1.54299 1.15659 0.83303 0.80179 0.79544 1.90867 1.22990 1.82146 1.54473 1.47867 1.16834 1.14942 1.56530 1.22185 0.81946 0.99122 0.98506 1.22597 0.96719 0.92519 1.02874 1.19879 0.88982 0.89931 0.82133 1.86072 1.45395 1.74768 1.33404 1.21849 0.95585 1.11999 1.29697 0.91065 1.25836 0.94682 1.00132 0.96938 1.69778 1.01095 1.38857 1.45923 0.85413 0.78743 0.78725 0.78174 1.18540 1.20724 1.21047 1.22736 1.00754 0.81226 0.94869 0.92507 0.88098 0.91813 0.90129 0.89377 0.79777 0.81106 0.86167 0.74038 0.90670 0.88923 0.89498 0.89111 0.77598 0.92197 0.93839 0.93954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 71.98 0.74 -0.22 16 2 C 0.04 0.30 5.46 71.98 0.39 0.69 16 3 O -0.32 -5.02 9.67 -91.75 -0.89 -5.91 16 4 C 0.15 2.66 6.71 22.70 0.15 2.81 16 5 C -0.18 -2.06 9.01 22.31 0.20 -1.85 16 6 C -0.02 -0.34 9.74 22.54 0.22 -0.12 16 7 C -0.07 -1.52 5.74 -21.32 -0.12 -1.65 16 8 C 0.28 7.88 15.32 88.33 1.35 9.23 16 9 N -0.47 -15.31 18.54 19.00 0.35 -14.95 16 10 C -0.05 -1.61 8.40 22.64 0.19 -1.42 16 11 C 0.12 3.06 6.32 38.13 0.24 3.30 16 12 N -0.66 -19.51 5.15 -316.91 -1.63 -21.14 16 13 C 0.71 28.29 8.33 179.05 1.49 29.78 16 14 O -0.62 -29.95 14.02 -4.01 -0.06 -30.00 16 15 N -0.63 -25.08 3.33 -829.68 -2.76 -27.84 16 16 C 0.10 3.23 6.16 86.73 0.53 3.76 16 17 C -0.11 -3.95 6.13 31.79 0.19 -3.76 16 18 C 0.23 10.98 0.88 -10.15 -0.01 10.98 16 19 O -0.59 -30.04 13.17 -148.98 -1.96 -32.00 16 20 C -0.55 -28.34 8.25 25.60 0.21 -28.13 16 21 H 0.07 3.51 7.78 -2.91 -0.02 3.49 16 22 C 0.02 1.29 5.29 84.66 0.45 1.74 16 23 N -0.92 -50.28 10.69 21.45 0.23 -50.05 16 24 Si 0.96 41.73 29.54 68.60 2.03 43.76 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 26 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 28 C 0.13 6.22 5.51 86.84 0.48 6.69 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.36 7.64 -2.39 -0.02 0.34 16 33 H 0.09 0.26 7.66 -2.39 -0.02 0.24 16 34 H 0.19 0.55 6.27 -2.91 -0.02 0.53 16 35 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.12 4.51 6.19 -2.91 -0.02 4.49 16 37 H 0.42 10.00 7.54 -92.71 -0.70 9.30 16 38 H 0.08 2.09 8.13 -2.39 -0.02 2.07 16 39 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 40 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 41 H 0.09 3.03 8.03 -2.39 -0.02 3.01 16 42 H 0.37 20.38 7.24 -74.05 -0.54 19.84 16 43 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 44 H 0.04 2.20 8.03 -2.39 -0.02 2.18 16 45 H 0.04 2.40 7.48 -2.39 -0.02 2.38 16 Total: -1.00 -72.62 382.02 1.85 -70.76 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -0.18 Total: 35.55 kcal Atomic # 6 Polarization: 25.12 SS G_CDS: 6.72 Total: 31.84 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -3.81 Total: -113.99 kcal Atomic # 8 Polarization: -65.01 SS G_CDS: -2.91 Total: -67.91 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -72.62 1.85 -70.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365482959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.203 kcal (2) G-P(sol) polarization free energy of solvation -72.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds