Wall clock time and date at job start Sat Apr 11 2020 07:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47062 * 2 1 4 4 C 1.42902 * 114.00363 * 180.02562 * 3 2 1 5 5 C 1.50690 * 109.47281 * 180.02562 * 4 3 2 6 6 N 1.31139 * 126.55062 * 90.00224 * 5 4 3 7 7 C 1.34498 * 105.61434 * 179.97438 * 6 5 4 8 8 C 1.50698 * 126.28949 * 179.97438 * 7 6 5 9 9 H 1.09008 * 109.46707 * 345.00040 * 8 7 6 10 10 C 1.52994 * 109.47241 * 104.99848 * 8 7 6 11 11 N 1.46498 * 109.47188 * 225.00019 * 8 7 6 12 12 C 1.34779 * 119.99730 * 154.99622 * 11 8 7 13 13 O 1.21611 * 120.00404 * 0.02562 * 12 11 8 14 14 C 1.47433 * 119.99705 * 180.02562 * 12 11 8 15 15 C 1.39222 * 120.28758 * 354.15707 * 14 12 11 16 16 C 1.38213 * 120.09659 * 179.97438 * 15 14 12 17 17 C 1.38824 * 120.67818 * 0.02619 * 16 15 14 18 18 C 1.37607 * 120.56749 * 359.97264 * 17 16 15 19 19 C 1.40703 * 119.88115 * 359.74905 * 18 17 16 20 20 C 1.40888 * 120.32952 * 180.25348 * 19 18 17 21 21 H 1.07997 * 120.00344 * 146.07882 * 20 19 18 22 22 C 1.40273 * 119.99393 * 326.07769 * 20 19 18 23 23 N 1.30621 * 120.00724 * 350.69120 * 22 20 19 24 24 Si 1.86810 * 119.99527 * 170.69106 * 22 20 19 25 25 H 1.48501 * 109.46948 * 89.99936 * 24 22 20 26 26 H 1.48494 * 109.47027 * 209.99893 * 24 22 20 27 27 H 1.48499 * 109.47074 * 330.00440 * 24 22 20 28 28 N 1.29954 * 107.42532 * 0.02562 * 7 6 5 29 29 O 1.21298 * 110.24979 * 0.02562 * 28 7 6 30 30 H 1.09001 * 109.46829 * 299.99218 * 1 2 3 31 31 H 1.08994 * 109.47583 * 59.99829 * 1 2 3 32 32 H 1.09005 * 109.46705 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46829 * 240.00782 * 2 1 3 34 34 H 1.08994 * 109.47583 * 120.00171 * 2 1 3 35 35 H 1.09003 * 109.46766 * 60.00085 * 4 3 2 36 36 H 1.09000 * 109.46981 * 300.00479 * 4 3 2 37 37 H 1.08998 * 109.47361 * 179.97438 * 10 8 7 38 38 H 1.09005 * 109.47249 * 300.00613 * 10 8 7 39 39 H 1.09000 * 109.46897 * 60.00177 * 10 8 7 40 40 H 0.96996 * 120.00283 * 334.99803 * 11 8 7 41 41 H 1.08005 * 119.95064 * 0.02562 * 15 14 12 42 42 H 1.08001 * 119.66399 * 180.02562 * 16 15 14 43 43 H 1.08001 * 119.71865 * 179.97438 * 17 16 15 44 44 H 1.07995 * 120.05564 * 180.02562 * 18 17 16 45 45 H 0.96994 * 120.00343 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8193 2.9162 0.0001 6 7 4.0212 3.6701 1.0539 7 6 4.3454 4.8840 0.5739 8 6 4.6721 6.1078 1.3903 9 1 4.3551 5.9519 2.4215 10 6 6.1810 6.3579 1.3528 11 7 3.9710 7.2675 0.8338 12 6 3.6850 8.3235 1.6210 13 8 4.0093 8.3139 2.7930 14 6 2.9788 9.4904 1.0611 15 6 2.7123 9.5615 -0.3035 16 6 2.0496 10.6570 -0.8240 17 6 1.6428 11.6966 0.0011 18 6 1.8919 11.6549 1.3538 19 6 2.5597 10.5483 1.9098 20 6 2.8148 10.4933 3.2943 21 1 2.7991 9.5441 3.8091 22 6 3.0894 11.6717 4.0041 23 7 3.2884 12.7907 3.3604 24 14 3.1703 11.6405 5.8702 25 1 4.5619 11.3517 6.3005 26 1 2.7503 12.9603 6.4059 27 1 2.2630 10.5848 6.3874 28 7 4.3240 4.8079 -0.7232 29 8 4.0232 3.6861 -1.0731 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.8332 0.9768 -0.8909 36 1 3.8340 0.9765 0.8891 37 1 6.4174 7.2433 1.9429 38 1 6.7028 5.4950 1.7668 39 1 6.4980 6.5137 0.3216 40 1 3.7126 7.2754 -0.1010 41 1 3.0231 8.7590 -0.9561 42 1 1.8460 10.7047 -1.8836 43 1 1.1264 12.5455 -0.4222 44 1 1.5714 12.4681 1.9881 45 1 3.4786 13.6054 3.8512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412186078.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:03 Heat of formation + Delta-G solvation = 10.718537 kcal Electronic energy + Delta-G solvation = -29275.682355 eV Core-core repulsion = 25068.778749 eV Total energy + Delta-G solvation = -4206.903605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -45.79851 -39.16111 -38.66667 -37.17640 -36.21900 -34.75370 -33.71973 -32.93604 -31.50381 -30.74621 -29.80603 -28.91270 -27.77395 -25.54706 -25.02289 -23.45099 -23.29023 -22.45459 -21.16217 -20.44095 -19.46145 -18.46612 -17.98199 -17.40426 -17.04707 -16.64399 -16.39101 -16.10408 -15.32002 -15.18335 -14.47245 -14.19288 -14.14776 -13.99038 -13.66288 -13.39151 -13.11345 -12.92652 -12.75011 -12.70099 -12.59193 -12.38892 -11.90819 -11.87770 -11.81946 -11.62688 -11.58847 -11.40226 -11.15739 -11.08214 -10.96406 -10.69420 -10.52408 -10.24797 -10.21784 -10.08087 -9.67717 -9.25698 -8.59179 -8.43619 -7.58664 -7.35598 -6.79326 -4.38311 0.82592 1.93664 2.34894 2.40564 2.82649 3.10972 3.16435 3.18527 3.24954 3.49325 3.75775 3.98460 4.01610 4.13886 4.45448 4.57902 4.68221 4.72414 4.75312 4.83071 4.89585 5.23646 5.24250 5.35145 5.47717 5.47875 5.63966 5.66575 5.72623 5.83619 5.92267 6.01662 6.18559 6.31008 6.32849 6.50841 6.60861 6.95080 6.97516 7.13322 7.22072 7.46682 7.63323 7.88495 7.97326 7.97957 8.18012 8.31051 8.66131 8.82216 8.89722 9.33013 10.15833 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012764 B = 0.002455 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.176261 B =11404.180540 C =11813.185074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.381 6.381 4 C 0.162 3.838 5 C 0.172 3.828 6 N -0.450 5.450 7 C 0.173 3.827 8 C 0.239 3.761 9 H 0.116 0.884 10 C -0.156 4.156 11 N -0.743 5.743 12 C 0.570 3.430 13 O -0.533 6.533 14 C -0.262 4.262 15 C -0.056 4.056 16 C -0.245 4.245 17 C -0.095 4.095 18 C -0.147 4.147 19 C 0.146 3.854 20 C -0.414 4.414 21 H 0.105 0.895 22 C 0.069 3.931 23 N -0.792 5.792 24 Si 0.918 3.082 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.259 1.259 28 N -0.367 5.367 29 O 0.091 5.909 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.396 0.604 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.118 0.882 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.347 -21.737 -6.702 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.016 4.016 3 O -0.300 6.300 4 C 0.084 3.916 5 C -0.050 4.050 6 N -0.185 5.185 7 C -0.101 4.101 8 C 0.132 3.868 9 H 0.134 0.866 10 C -0.216 4.216 11 N -0.399 5.399 12 C 0.365 3.635 13 O -0.411 6.411 14 C -0.267 4.267 15 C -0.075 4.075 16 C -0.264 4.264 17 C -0.114 4.114 18 C -0.166 4.166 19 C 0.142 3.858 20 C -0.443 4.443 21 H 0.123 0.877 22 C -0.149 4.149 23 N -0.417 5.417 24 Si 0.742 3.258 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.183 1.183 28 N -0.072 5.072 29 O 0.029 5.971 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.231 0.769 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.136 0.864 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.711 -20.552 -5.865 21.384 hybrid contribution 0.139 -0.247 0.035 0.286 sum 0.850 -20.799 -5.830 21.618 Atomic orbital electron populations 1.21766 0.93127 1.02556 1.03671 1.22574 0.96110 0.82248 1.00707 1.87991 1.18415 1.27943 1.95633 1.20481 0.83712 0.83303 1.04127 1.28210 0.98086 0.97652 0.81044 1.71878 1.16499 1.01429 1.28686 1.26102 0.99920 0.95810 0.88234 1.18909 0.93399 0.78280 0.96243 0.86591 1.22183 0.93270 1.03199 1.02910 1.46109 1.62526 1.17018 1.14251 1.18440 0.77993 0.81763 0.85308 1.90683 1.53849 1.80211 1.16330 1.19369 1.14272 0.99878 0.93190 1.20658 0.96787 0.96343 0.93700 1.20281 1.10928 0.97420 0.97773 1.20810 0.99306 0.96857 0.94412 1.21355 1.01405 1.00056 0.93805 1.17469 0.86597 0.88922 0.92794 1.20159 1.36369 0.94852 0.92876 0.87709 1.26127 0.92651 0.94551 1.01576 1.69711 1.32980 1.00504 1.38502 0.86147 0.79837 0.78280 0.81532 1.19280 1.20325 1.18276 1.74621 1.18455 0.98352 1.15726 1.85308 1.61355 1.14879 1.35547 0.91506 0.91588 0.90674 0.92638 0.92596 0.89184 0.88302 0.89876 0.91801 0.92183 0.76854 0.89362 0.89072 0.89028 0.86390 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.33 6.66 37.16 0.25 0.58 16 3 O -0.38 -3.47 10.33 -35.23 -0.36 -3.83 16 4 C 0.16 1.15 6.56 36.00 0.24 1.39 16 5 C 0.17 2.00 8.14 -13.05 -0.11 1.89 16 6 N -0.45 -6.54 11.55 -9.86 -0.11 -6.65 16 7 C 0.17 2.71 7.01 -156.36 -1.10 1.61 16 8 C 0.24 4.06 3.12 -69.09 -0.22 3.85 16 9 H 0.12 2.12 7.58 -51.92 -0.39 1.73 16 10 C -0.16 -2.35 9.47 37.15 0.35 -2.00 16 11 N -0.74 -14.30 5.02 -56.01 -0.28 -14.58 16 12 C 0.57 13.47 7.68 -12.52 -0.10 13.37 16 13 O -0.53 -13.91 13.26 5.27 0.07 -13.84 16 14 C -0.26 -6.56 5.92 -104.36 -0.62 -7.17 16 15 C -0.06 -1.25 9.52 -39.22 -0.37 -1.62 16 16 C -0.24 -5.37 10.03 -39.37 -0.39 -5.76 16 17 C -0.09 -2.18 10.01 -39.59 -0.40 -2.58 16 18 C -0.15 -3.78 8.62 -38.88 -0.34 -4.11 16 19 C 0.15 3.98 5.51 -106.54 -0.59 3.39 16 20 C -0.41 -11.44 7.67 -37.81 -0.29 -11.73 16 21 H 0.11 2.99 5.93 -52.49 -0.31 2.68 16 22 C 0.07 1.79 5.25 -17.30 -0.09 1.70 16 23 N -0.79 -20.63 11.13 55.56 0.62 -20.01 16 24 Si 0.92 19.78 29.57 -169.99 -5.03 14.76 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 26 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 27 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 28 N -0.37 -5.52 11.86 30.91 0.37 -5.16 16 29 O 0.09 1.17 11.31 18.09 0.20 1.38 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.40 7.17 6.42 -40.82 -0.26 6.91 16 41 H 0.09 1.70 6.44 -52.48 -0.34 1.36 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.12 3.08 6.58 -52.49 -0.35 2.73 16 45 H 0.28 6.68 8.29 -40.82 -0.34 6.34 16 LS Contribution 385.57 15.07 5.81 5.81 Total: -1.00 -31.99 385.57 -7.96 -39.94 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -5.86 Total: 9.87 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -3.38 Total: -7.69 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.59 Total: -46.40 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.09 Total: -16.30 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.76 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.99 -7.96 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412186078.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.663 kcal (2) G-P(sol) polarization free energy of solvation -31.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds