Wall clock time and date at job start Sat Apr 11 2020 07:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47517 * 2 1 4 4 C 1.50697 * 109.47150 * 120.00244 * 2 1 3 5 5 H 1.08001 * 119.99920 * 119.99641 * 4 2 1 6 6 C 1.37877 * 120.00197 * 299.99972 * 4 2 1 7 7 N 1.31512 * 120.00268 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99751 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46886 * 90.00340 * 8 6 4 10 10 H 1.48496 * 109.47467 * 210.00217 * 8 6 4 11 11 H 1.48500 * 109.47401 * 330.00681 * 8 6 4 12 12 N 1.46503 * 109.46655 * 239.99938 * 2 1 3 13 13 C 1.46501 * 120.00157 * 303.84984 * 12 2 1 14 14 S 1.65603 * 120.00081 * 123.84806 * 12 2 1 15 15 O 1.42092 * 106.40503 * 174.77733 * 14 12 2 16 16 O 1.42109 * 106.39995 * 41.85983 * 14 12 2 17 17 N 1.65595 * 107.21742 * 288.32124 * 14 12 2 18 18 C 1.46499 * 120.00287 * 286.61614 * 17 14 12 19 19 C 1.54077 * 108.02416 * 283.12434 * 18 17 14 20 20 C 1.51692 * 103.14297 * 274.43772 * 19 18 17 21 21 O 1.21277 * 125.00915 * 163.47295 * 20 19 18 22 22 N 1.34688 * 109.98070 * 343.45119 * 20 19 18 23 23 C 1.47968 * 110.65670 * 356.78399 * 22 20 19 24 24 H 1.09000 * 111.07850 * 141.44111 * 23 22 20 25 25 C 1.52904 * 107.81090 * 263.20050 * 23 22 20 26 26 C 1.50049 * 111.32678 * 165.92065 * 25 23 22 27 27 C 1.52718 * 108.99767 * 295.92700 * 26 25 23 28 28 C 1.49328 * 108.29751 * 45.29503 * 18 17 14 29 29 H 1.09001 * 109.46814 * 305.72409 * 1 2 3 30 30 H 1.08999 * 109.47192 * 65.71475 * 1 2 3 31 31 H 1.08999 * 109.47511 * 185.72122 * 1 2 3 32 32 H 0.97000 * 120.00230 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46777 * 275.68118 * 13 12 2 34 34 H 1.08996 * 109.47263 * 35.68059 * 13 12 2 35 35 H 1.09001 * 109.47002 * 155.68404 * 13 12 2 36 36 H 0.97010 * 120.00230 * 106.62039 * 17 14 12 37 37 H 1.09007 * 110.68582 * 32.84668 * 19 18 17 38 38 H 1.08999 * 110.68796 * 156.02630 * 19 18 17 39 39 H 0.97011 * 124.66993 * 176.80575 * 22 20 19 40 40 H 1.08999 * 109.41364 * 287.09490 * 25 23 22 41 41 H 1.09001 * 109.40981 * 46.87786 * 25 23 22 42 42 H 1.08995 * 109.99710 * 175.64031 * 26 25 23 43 43 H 1.09000 * 108.75969 * 55.47423 * 26 25 23 44 44 H 1.08993 * 109.24436 * 299.53570 * 27 26 25 45 45 H 1.08996 * 109.20632 * 180.11171 * 27 26 25 46 46 H 1.08991 * 108.22099 * 280.31227 * 28 18 17 47 47 H 1.08999 * 108.22115 * 37.03512 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8743 2.6994 10 1 0.9772 1.9952 3.9070 11 1 0.8491 2.1772 1.4923 12 7 2.0182 -0.6907 -1.1962 13 6 1.5961 -2.0663 -1.4715 14 16 3.0473 0.0836 -2.2373 15 8 3.4292 -0.8768 -3.2124 16 8 3.9826 0.7851 -1.4294 17 7 2.1632 1.2342 -3.0353 18 6 1.2068 0.8354 -4.0709 19 6 2.0007 0.4899 -5.3454 20 6 2.1728 1.8374 -6.0204 21 8 2.9725 2.0781 -6.8998 22 7 1.3061 2.7272 -5.4995 23 6 0.4273 2.0773 -4.5021 24 1 0.2424 2.7365 -3.6539 25 6 -0.8807 1.7069 -5.2020 26 6 -1.6906 0.7518 -4.3754 27 6 -0.9199 -0.5589 -4.2323 28 6 0.4156 -0.3224 -3.5576 29 1 -0.3633 0.6001 0.8343 30 1 -0.3633 0.4227 -0.9367 31 1 -0.3634 -1.0225 0.1024 32 1 1.9041 -0.5276 4.4375 33 1 2.2361 -2.7589 -0.9249 34 1 0.5619 -2.1994 -1.1539 35 1 1.6762 -2.2639 -2.5404 36 1 2.2786 2.1723 -2.8170 37 1 2.9697 0.0604 -5.0909 38 1 1.4323 -0.1891 -5.9809 39 1 1.2637 3.6648 -5.7447 40 1 -1.4612 2.6107 -5.3870 41 1 -0.6582 1.2199 -6.1515 42 1 -2.6499 0.5628 -4.8570 43 1 -1.8536 1.1911 -3.3913 44 1 -0.7521 -0.9867 -5.2206 45 1 -1.5061 -1.2561 -3.6338 46 1 1.0183 -1.2235 -3.6696 47 1 0.2370 -0.1681 -2.4934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413481263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:11 Heat of formation + Delta-G solvation = -89.954135 kcal Electronic energy + Delta-G solvation = -31851.530159 eV Core-core repulsion = 27775.705010 eV Total energy + Delta-G solvation = -4075.825149 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.54951 -38.25881 -36.87190 -36.66669 -35.42463 -35.05538 -34.56042 -32.59246 -30.80291 -30.09836 -29.27517 -27.56558 -25.95113 -25.06825 -23.40850 -22.38708 -20.96575 -20.85173 -19.34578 -18.76934 -17.50762 -17.42035 -17.31580 -16.96129 -16.33747 -15.62228 -15.51323 -15.21382 -14.94300 -14.75132 -14.21701 -13.97186 -13.83443 -13.67492 -13.46162 -13.30654 -12.96055 -12.67137 -12.50127 -12.38245 -12.23597 -12.11717 -12.02331 -11.64353 -11.56774 -11.53617 -11.45563 -11.30791 -11.17277 -11.05950 -10.75984 -10.55494 -10.34900 -10.25261 -10.13991 -9.74034 -9.51739 -9.47559 -9.34031 -8.69637 -8.17262 -6.17535 -4.18098 0.97236 2.47990 3.05887 3.14388 3.17605 3.23017 3.29543 3.74698 4.00253 4.15597 4.27393 4.39121 4.55276 4.64948 4.71350 4.76891 4.87206 4.92978 5.10000 5.14735 5.23623 5.32848 5.46783 5.48786 5.54008 5.68126 5.71765 5.81122 5.87238 5.93871 5.94923 5.99460 6.04438 6.10963 6.19837 6.31726 6.38655 6.48588 6.56649 6.68930 6.79053 6.91817 7.15843 7.31778 7.54431 8.09600 8.41593 8.88248 9.41608 10.95757 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.004731 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.200892 B = 5917.100330 C = 6485.423148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.248 3.752 3 H 0.043 0.957 4 C -0.521 4.521 5 H 0.082 0.918 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.267 1.267 12 N -0.986 5.986 13 C 0.097 3.903 14 S 2.781 3.219 15 O -0.988 6.988 16 O -0.969 6.969 17 N -1.130 6.130 18 C 0.195 3.805 19 C -0.177 4.177 20 C 0.525 3.475 21 O -0.535 6.535 22 N -0.734 5.734 23 C 0.142 3.858 24 H 0.104 0.896 25 C -0.127 4.127 26 C -0.121 4.121 27 C -0.106 4.106 28 C -0.172 4.172 29 H 0.048 0.952 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.266 0.734 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.414 0.586 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.409 0.591 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.270 3.926 -16.491 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.143 3.857 3 H 0.061 0.939 4 C -0.560 4.560 5 H 0.100 0.900 6 C -0.129 4.129 7 N -0.530 5.530 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.193 1.193 12 N -0.828 5.828 13 C -0.049 4.049 14 S 2.790 3.210 15 O -0.971 6.971 16 O -0.953 6.953 17 N -0.887 5.887 18 C 0.106 3.894 19 C -0.219 4.219 20 C 0.311 3.689 21 O -0.411 6.411 22 N -0.390 5.390 23 C 0.036 3.964 24 H 0.122 0.878 25 C -0.166 4.166 26 C -0.159 4.159 27 C -0.144 4.144 28 C -0.210 4.210 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.248 0.752 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.248 0.752 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.858 3.550 -16.884 19.871 hybrid contribution -0.982 1.786 0.526 2.105 sum -10.839 5.336 -16.358 20.336 Atomic orbital electron populations 1.22570 0.99004 1.01889 0.98900 1.18936 0.90391 0.92610 0.83769 0.93904 1.21159 1.32360 1.14332 0.88138 0.89965 1.24912 0.95769 0.96474 0.95769 1.69868 1.45059 1.40102 0.97974 0.86961 0.80565 0.83858 0.77388 1.20383 1.22107 1.19267 1.57481 1.66830 1.22437 1.36069 1.21449 1.01369 0.82327 0.99736 1.02021 0.73412 0.72888 0.72709 1.93517 1.81603 1.61397 1.60618 1.93648 1.58831 1.74297 1.68481 1.56570 1.57933 1.22786 1.51429 1.19663 0.88674 0.94307 0.86769 1.23263 1.05350 0.96197 0.97053 1.21051 0.79068 0.87611 0.81132 1.90743 1.37272 1.82343 1.30756 1.46713 1.36660 1.12343 1.43292 1.21753 0.89619 0.93516 0.91559 0.87774 1.21394 0.95040 1.00367 0.99841 1.20959 0.98516 0.95497 1.00921 1.21049 0.94511 0.97693 1.01111 1.21607 0.97776 0.97592 1.04018 0.93346 0.94359 0.91787 0.92430 0.92649 0.91159 0.91416 0.75247 0.85410 0.86901 0.75201 0.90935 0.91269 0.90943 0.91250 0.91755 0.90510 0.89005 0.87825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 7.90 37.16 0.29 -2.61 16 2 C 0.25 5.17 2.15 -69.08 -0.15 5.02 16 3 H 0.04 0.94 6.59 -51.93 -0.34 0.60 16 4 C -0.52 -13.64 9.01 -34.44 -0.31 -13.95 16 5 H 0.08 2.38 8.01 -52.49 -0.42 1.96 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 8 Si 0.88 20.27 24.31 -169.99 -4.13 16.14 16 9 H -0.28 -6.04 6.92 56.52 0.39 -5.65 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -5.74 6.53 56.52 0.37 -5.37 16 12 N -0.99 -17.57 1.74 -115.85 -0.20 -17.77 16 13 C 0.10 1.48 8.30 59.85 0.50 1.98 16 14 S 2.78 48.75 5.35 -107.50 -0.58 48.18 16 15 O -0.99 -17.64 13.27 -57.17 -0.76 -18.40 16 16 O -0.97 -21.49 17.47 -57.17 -1.00 -22.49 16 17 N -1.13 -14.58 5.32 -0.55 0.00 -14.58 16 18 C 0.20 2.06 0.68 -133.15 -0.09 1.96 16 19 C -0.18 -2.09 5.49 -26.83 -0.15 -2.24 16 20 C 0.52 6.79 8.40 -10.54 -0.09 6.70 16 21 O -0.53 -9.11 18.03 5.56 0.10 -9.01 16 22 N -0.73 -6.75 5.86 -52.65 -0.31 -7.06 16 23 C 0.14 1.15 3.23 -67.25 -0.22 0.93 16 24 H 0.10 0.73 7.99 -51.93 -0.42 0.31 16 25 C -0.13 -0.81 5.15 -28.25 -0.15 -0.96 16 26 C -0.12 -0.75 5.85 -28.34 -0.17 -0.91 16 27 C -0.11 -0.76 5.93 -27.64 -0.16 -0.92 16 28 C -0.17 -1.69 2.83 -29.31 -0.08 -1.77 16 29 H 0.05 0.92 3.44 -51.93 -0.18 0.74 16 30 H 0.04 0.52 6.15 -51.93 -0.32 0.21 16 31 H 0.06 1.09 6.89 -51.93 -0.36 0.73 16 32 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.96 6.42 -51.93 -0.33 0.63 16 35 H 0.07 0.87 4.92 -51.93 -0.26 0.61 16 36 H 0.41 4.75 8.47 -34.47 -0.29 4.46 16 37 H 0.13 1.82 5.93 -51.92 -0.31 1.51 16 38 H 0.11 1.09 8.07 -51.93 -0.42 0.67 16 39 H 0.41 3.06 8.96 -40.82 -0.37 2.70 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.97 4.54 -51.93 -0.24 0.73 16 47 H 0.10 1.13 3.47 -51.93 -0.18 0.95 16 LS Contribution 351.32 15.07 5.29 5.29 Total: -1.00 -34.91 351.32 -8.23 -43.15 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -6.56 Total: 6.82 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.87 Total: -4.86 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: 0.26 Total: -64.81 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -1.66 Total: -49.90 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.13 Total: 16.14 kcal Atomic # 16 Polarization: 48.75 SS G_CDS: -0.58 Total: 48.18 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.91 -8.23 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413481263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.806 kcal (2) G-P(sol) polarization free energy of solvation -34.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds