Wall clock time and date at job start Sat Apr 11 2020 07:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47517 * 2 1 4 4 C 1.50697 * 109.47150 * 120.00244 * 2 1 3 5 5 H 1.08001 * 119.99920 * 119.99641 * 4 2 1 6 6 C 1.37877 * 120.00197 * 299.99972 * 4 2 1 7 7 N 1.31512 * 120.00268 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99751 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46886 * 90.00340 * 8 6 4 10 10 H 1.48496 * 109.47467 * 210.00217 * 8 6 4 11 11 H 1.48500 * 109.47401 * 330.00681 * 8 6 4 12 12 N 1.46503 * 109.46655 * 239.99938 * 2 1 3 13 13 C 1.46501 * 120.00157 * 303.84984 * 12 2 1 14 14 S 1.65603 * 120.00081 * 123.84806 * 12 2 1 15 15 O 1.42092 * 106.40503 * 174.77733 * 14 12 2 16 16 O 1.42109 * 106.39995 * 41.85983 * 14 12 2 17 17 N 1.65595 * 107.21742 * 288.32124 * 14 12 2 18 18 C 1.46499 * 120.00287 * 286.61614 * 17 14 12 19 19 C 1.54077 * 108.02416 * 283.12434 * 18 17 14 20 20 C 1.51692 * 103.14297 * 274.43772 * 19 18 17 21 21 O 1.21277 * 125.00915 * 163.47295 * 20 19 18 22 22 N 1.34688 * 109.98070 * 343.45119 * 20 19 18 23 23 C 1.47968 * 110.65670 * 356.78399 * 22 20 19 24 24 H 1.09000 * 111.07850 * 141.44111 * 23 22 20 25 25 C 1.52904 * 107.81090 * 263.20050 * 23 22 20 26 26 C 1.50049 * 111.32678 * 165.92065 * 25 23 22 27 27 C 1.52718 * 108.99767 * 295.92700 * 26 25 23 28 28 C 1.49328 * 108.29751 * 45.29503 * 18 17 14 29 29 H 1.09001 * 109.46814 * 305.72409 * 1 2 3 30 30 H 1.08999 * 109.47192 * 65.71475 * 1 2 3 31 31 H 1.08999 * 109.47511 * 185.72122 * 1 2 3 32 32 H 0.97000 * 120.00230 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.46777 * 275.68118 * 13 12 2 34 34 H 1.08996 * 109.47263 * 35.68059 * 13 12 2 35 35 H 1.09001 * 109.47002 * 155.68404 * 13 12 2 36 36 H 0.97010 * 120.00230 * 106.62039 * 17 14 12 37 37 H 1.09007 * 110.68582 * 32.84668 * 19 18 17 38 38 H 1.08999 * 110.68796 * 156.02630 * 19 18 17 39 39 H 0.97011 * 124.66993 * 176.80575 * 22 20 19 40 40 H 1.08999 * 109.41364 * 287.09490 * 25 23 22 41 41 H 1.09001 * 109.40981 * 46.87786 * 25 23 22 42 42 H 1.08995 * 109.99710 * 175.64031 * 26 25 23 43 43 H 1.09000 * 108.75969 * 55.47423 * 26 25 23 44 44 H 1.08993 * 109.24436 * 299.53570 * 27 26 25 45 45 H 1.08996 * 109.20632 * 180.11171 * 27 26 25 46 46 H 1.08991 * 108.22099 * 280.31227 * 28 18 17 47 47 H 1.08999 * 108.22115 * 37.03512 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8743 2.6994 10 1 0.9772 1.9952 3.9070 11 1 0.8491 2.1772 1.4923 12 7 2.0182 -0.6907 -1.1962 13 6 1.5961 -2.0663 -1.4715 14 16 3.0473 0.0836 -2.2373 15 8 3.4292 -0.8768 -3.2124 16 8 3.9826 0.7851 -1.4294 17 7 2.1632 1.2342 -3.0353 18 6 1.2068 0.8354 -4.0709 19 6 2.0007 0.4899 -5.3454 20 6 2.1728 1.8374 -6.0204 21 8 2.9725 2.0781 -6.8998 22 7 1.3061 2.7272 -5.4995 23 6 0.4273 2.0773 -4.5021 24 1 0.2424 2.7365 -3.6539 25 6 -0.8807 1.7069 -5.2020 26 6 -1.6906 0.7518 -4.3754 27 6 -0.9199 -0.5589 -4.2323 28 6 0.4156 -0.3224 -3.5576 29 1 -0.3633 0.6001 0.8343 30 1 -0.3633 0.4227 -0.9367 31 1 -0.3634 -1.0225 0.1024 32 1 1.9041 -0.5276 4.4375 33 1 2.2361 -2.7589 -0.9249 34 1 0.5619 -2.1994 -1.1539 35 1 1.6762 -2.2639 -2.5404 36 1 2.2786 2.1723 -2.8170 37 1 2.9697 0.0604 -5.0909 38 1 1.4323 -0.1891 -5.9809 39 1 1.2637 3.6648 -5.7447 40 1 -1.4612 2.6107 -5.3870 41 1 -0.6582 1.2199 -6.1515 42 1 -2.6499 0.5628 -4.8570 43 1 -1.8536 1.1911 -3.3913 44 1 -0.7521 -0.9867 -5.2206 45 1 -1.5061 -1.2561 -3.6338 46 1 1.0183 -1.2235 -3.6696 47 1 0.2370 -0.1681 -2.4934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413481263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:10 Heat of formation + Delta-G solvation = -120.108743 kcal Electronic energy + Delta-G solvation = -31852.837761 eV Core-core repulsion = 27775.705010 eV Total energy + Delta-G solvation = -4077.132751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.38634 -39.26040 -38.37260 -38.13924 -36.95012 -35.78542 -35.50327 -34.50436 -31.90775 -31.46541 -30.05525 -28.36015 -27.33065 -26.86983 -24.09738 -23.09080 -22.58098 -21.76936 -20.17125 -19.95118 -18.95191 -18.76446 -18.43269 -18.21838 -17.73840 -17.07439 -16.50217 -16.35650 -16.01209 -15.71326 -15.29661 -15.15382 -14.89876 -14.84291 -14.67791 -14.32916 -14.17825 -13.92156 -13.75547 -13.67551 -13.49350 -13.30901 -13.14751 -13.03950 -12.90306 -12.87518 -12.67455 -12.47783 -12.16249 -12.05097 -11.96352 -11.85694 -11.46233 -11.35318 -11.24488 -11.16261 -10.99145 -10.72458 -10.52281 -10.15146 -9.68411 -8.25154 -6.30493 -0.42215 1.33486 1.41889 1.48898 1.50506 1.91687 2.29282 2.35770 2.49476 3.09621 3.15001 3.27905 3.38610 3.58645 3.82247 3.93411 4.03079 4.11966 4.27122 4.32487 4.40940 4.48710 4.54784 4.66547 4.70401 4.76104 4.79184 4.84527 4.88464 4.94227 5.11235 5.13952 5.18653 5.22133 5.29425 5.30415 5.45150 5.47846 5.55047 5.61111 5.68113 5.76673 5.83163 5.96499 6.03947 6.38800 6.74767 7.19868 7.33922 8.92180 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015187 B = 0.004731 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.200892 B = 5917.100330 C = 6485.423148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.249 3.751 3 H 0.038 0.962 4 C -0.525 4.525 5 H 0.033 0.967 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.944 3.056 9 H -0.250 1.250 10 H -0.307 1.307 11 H -0.239 1.239 12 N -0.988 5.988 13 C 0.093 3.907 14 S 2.793 3.207 15 O -0.996 6.996 16 O -1.023 7.023 17 N -1.116 6.116 18 C 0.194 3.806 19 C -0.180 4.180 20 C 0.519 3.481 21 O -0.585 6.585 22 N -0.716 5.716 23 C 0.144 3.856 24 H 0.127 0.873 25 C -0.122 4.122 26 C -0.118 4.118 27 C -0.104 4.104 28 C -0.172 4.172 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.265 0.735 33 H 0.028 0.972 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.423 0.577 37 H 0.101 0.899 38 H 0.135 0.865 39 H 0.420 0.580 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.277 5.691 -18.375 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.144 3.856 3 H 0.055 0.945 4 C -0.564 4.564 5 H 0.052 0.948 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.770 3.230 9 H -0.175 1.175 10 H -0.235 1.235 11 H -0.163 1.163 12 N -0.829 5.829 13 C -0.052 4.052 14 S 2.803 3.197 15 O -0.979 6.979 16 O -1.006 7.006 17 N -0.877 5.877 18 C 0.105 3.895 19 C -0.221 4.221 20 C 0.306 3.694 21 O -0.466 6.466 22 N -0.371 5.371 23 C 0.039 3.961 24 H 0.145 0.855 25 C -0.161 4.161 26 C -0.156 4.156 27 C -0.142 4.142 28 C -0.210 4.210 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.047 0.953 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.259 0.741 37 H 0.119 0.881 38 H 0.153 0.847 39 H 0.261 0.739 40 H 0.110 0.890 41 H 0.084 0.916 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.903 5.317 -18.782 23.965 hybrid contribution 0.359 1.134 1.034 1.576 sum -13.543 6.451 -17.748 23.238 Atomic orbital electron populations 1.22430 0.95473 1.02626 1.01167 1.18765 0.92934 0.91576 0.82350 0.94468 1.21514 1.31135 1.12952 0.90810 0.94849 1.25869 0.97567 1.00116 0.95232 1.70059 1.47641 1.42636 0.98660 0.85963 0.79717 0.79751 0.77609 1.17516 1.23522 1.16255 1.57363 1.66615 1.23459 1.35482 1.21627 1.01883 0.80560 1.01162 1.01392 0.73119 0.72870 0.72356 1.93506 1.81955 1.62048 1.60438 1.93576 1.61445 1.75445 1.70182 1.56192 1.58098 1.22272 1.51178 1.19962 0.88238 0.96065 0.85203 1.23266 1.04582 0.96136 0.98126 1.21237 0.78940 0.88524 0.80680 1.90717 1.39538 1.83198 1.33120 1.46656 1.35543 1.12523 1.42419 1.21974 0.89693 0.92424 0.92032 0.85513 1.21384 0.93878 1.01440 0.99404 1.20971 0.98868 0.94511 1.01250 1.21087 0.92929 0.98784 1.01415 1.21620 0.99082 0.96518 1.03807 0.94041 0.89537 0.91392 0.92622 0.95306 0.89020 0.88741 0.74136 0.88124 0.84723 0.73935 0.88968 0.91588 0.89279 0.90819 0.90977 0.89532 0.90111 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.98 7.90 71.98 0.57 -4.41 16 2 C 0.25 10.11 2.15 44.24 0.10 10.20 16 3 H 0.04 1.57 6.59 -2.39 -0.02 1.55 16 4 C -0.52 -28.21 9.01 25.60 0.23 -27.98 16 5 H 0.03 2.05 8.01 -2.91 -0.02 2.03 16 6 C 0.01 0.53 5.45 84.65 0.46 1.00 16 7 N -0.95 -57.98 13.96 21.45 0.30 -57.68 16 8 Si 0.94 40.83 24.31 68.60 1.67 42.49 16 9 H -0.25 -9.70 6.92 99.48 0.69 -9.01 16 10 H -0.31 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.24 -9.14 6.53 99.48 0.65 -8.49 16 12 N -0.99 -34.51 1.74 -520.44 -0.90 -35.41 16 13 C 0.09 2.76 8.30 127.77 1.06 3.82 16 14 S 2.79 97.29 5.35 -56.49 -0.30 96.99 16 15 O -1.00 -35.67 13.27 -128.00 -1.70 -37.37 16 16 O -1.02 -46.42 17.47 -128.00 -2.24 -48.66 16 17 N -1.12 -26.53 5.32 -155.64 -0.83 -27.36 16 18 C 0.19 3.49 0.68 2.74 0.00 3.49 16 19 C -0.18 -3.94 5.49 30.53 0.17 -3.77 16 20 C 0.52 12.69 8.40 87.99 0.74 13.43 16 21 O -0.59 -19.89 18.03 -3.02 -0.05 -19.95 16 22 N -0.72 -11.05 5.86 -438.92 -2.57 -13.62 16 23 C 0.14 1.71 3.23 44.62 0.14 1.85 16 24 H 0.13 1.06 7.99 -2.39 -0.02 1.04 16 25 C -0.12 -0.93 5.15 29.61 0.15 -0.78 16 26 C -0.12 -0.80 5.85 29.55 0.17 -0.63 16 27 C -0.10 -1.00 5.93 30.00 0.18 -0.82 16 28 C -0.17 -2.76 2.83 28.92 0.08 -2.67 16 29 H 0.04 1.38 3.44 -2.39 -0.01 1.37 16 30 H 0.09 1.89 6.15 -2.39 -0.01 1.87 16 31 H 0.07 2.08 6.89 -2.39 -0.02 2.07 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 2.32 6.42 -2.39 -0.02 2.30 16 35 H 0.09 2.29 4.92 -2.39 -0.01 2.28 16 36 H 0.42 8.71 8.47 -96.73 -0.82 7.89 16 37 H 0.10 2.84 5.93 -2.38 -0.01 2.83 16 38 H 0.13 2.29 8.07 -2.39 -0.02 2.27 16 39 H 0.42 4.98 8.96 -92.70 -0.83 4.15 16 40 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.07 0.60 8.07 -2.39 -0.02 0.58 16 42 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.07 0.60 8.14 -2.39 -0.02 0.59 16 45 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.08 1.48 4.54 -2.39 -0.01 1.47 16 47 H 0.10 1.70 3.47 -2.39 -0.01 1.69 16 Total: -1.00 -81.90 351.32 -3.26 -85.16 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -0.69 Total: 22.66 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 4.05 Total: -7.27 kcal Atomic # 7 Polarization: -130.06 SS G_CDS: -4.00 Total: -134.07 kcal Atomic # 8 Polarization: -101.99 SS G_CDS: -3.99 Total: -105.98 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.67 Total: 42.49 kcal Atomic # 16 Polarization: 97.29 SS G_CDS: -0.30 Total: 96.99 kcal Total: -81.90 -3.26 -85.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413481263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.947 kcal (2) G-P(sol) polarization free energy of solvation -81.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds