Wall clock time and date at job start Sat Apr 11 2020 07:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47664 * 2 1 4 4 C 1.47205 * 109.47286 * 120.00138 * 2 1 3 5 5 N 2.60802 * 109.46998 * 120.00139 * 2 1 3 6 6 O 1.42903 * 109.47074 * 239.99767 * 2 1 3 7 7 C 1.35980 * 116.99510 * 82.99897 * 6 2 1 8 8 C 1.38548 * 120.08745 * 357.36240 * 7 6 2 9 9 C 1.38251 * 120.01724 * 180.02562 * 8 7 6 10 10 C 1.38265 * 120.17416 * 359.95584 * 9 8 7 11 11 C 1.38210 * 120.16570 * 359.97438 * 10 9 8 12 12 C 1.38713 * 119.98136 * 0.02562 * 11 10 9 13 13 N 1.40170 * 120.08152 * 179.72380 * 12 11 10 14 14 C 1.34774 * 120.00303 * 28.67114 * 13 12 11 15 15 O 1.21595 * 120.00320 * 356.01588 * 14 13 12 16 16 N 1.34776 * 119.99946 * 176.01931 * 14 13 12 17 17 C 1.47428 * 125.64929 * 359.68569 * 16 14 13 18 18 C 1.55131 * 104.72155 * 155.81710 * 17 16 14 19 19 C 1.55158 * 101.48294 * 37.30060 * 18 17 16 20 20 O 1.42901 * 110.72331 * 82.69572 * 19 18 17 21 21 C 1.50704 * 110.87330 * 205.89649 * 19 18 17 22 22 H 1.07997 * 120.00374 * 117.50556 * 21 19 18 23 23 C 1.37884 * 119.99853 * 297.51031 * 21 19 18 24 24 N 1.31508 * 119.99963 * 183.19908 * 23 21 19 25 25 Si 1.86798 * 119.99800 * 3.19669 * 23 21 19 26 26 H 1.48495 * 109.47392 * 91.01251 * 25 23 21 27 27 H 1.48507 * 109.47085 * 211.00971 * 25 23 21 28 28 H 1.48506 * 109.47402 * 331.00987 * 25 23 21 29 29 C 1.47028 * 125.64824 * 180.02562 * 16 14 13 30 30 H 1.09003 * 109.46846 * 300.00296 * 1 2 3 31 31 H 1.09008 * 109.46942 * 59.99565 * 1 2 3 32 32 H 1.08990 * 109.47420 * 179.97438 * 1 2 3 33 33 H 1.07997 * 119.98793 * 0.04665 * 8 7 6 34 34 H 1.07998 * 119.90852 * 179.97438 * 9 8 7 35 35 H 1.08001 * 119.91602 * 180.02562 * 10 9 8 36 36 H 1.07998 * 120.00687 * 180.02562 * 11 10 9 37 37 H 0.97006 * 119.99493 * 208.66532 * 13 12 11 38 38 H 1.08992 * 110.36745 * 274.75069 * 17 16 14 39 39 H 1.09005 * 110.36349 * 37.07367 * 17 16 14 40 40 H 1.09000 * 111.19488 * 279.19523 * 18 17 16 41 41 H 1.08995 * 110.90484 * 155.27340 * 18 17 16 42 42 H 0.96695 * 114.00487 * 185.02454 * 20 19 18 43 43 H 0.96996 * 120.00247 * 179.97438 * 24 23 21 44 44 H 1.08994 * 109.87841 * 300.43725 * 29 16 14 45 45 H 1.08998 * 109.88062 * 61.44787 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6940 1.2019 5 7 2.3992 -1.2295 2.1294 6 8 2.0063 -0.6737 -1.1668 7 6 2.0728 0.0522 -2.3147 8 6 1.6370 1.3672 -2.3312 9 6 1.7048 2.1037 -3.4992 10 6 2.2078 1.5318 -4.6532 11 6 2.6459 0.2210 -4.6448 12 6 2.5809 -0.5241 -3.4765 13 7 3.0193 -1.8554 -3.4670 14 6 3.9863 -2.2526 -4.3176 15 8 4.4276 -1.4755 -5.1422 16 7 4.4642 -3.5112 -4.2543 17 6 4.0261 -4.5499 -3.3042 18 6 4.3677 -5.8923 -4.0025 19 6 5.7108 -5.5458 -4.6979 20 8 6.8008 -5.6688 -3.7820 21 6 5.9310 -6.4194 -5.9060 22 1 5.9964 -5.9757 -6.8885 23 6 6.0488 -7.7851 -5.7570 24 7 6.3036 -8.5410 -6.8025 25 14 5.8466 -8.5614 -4.0701 26 1 4.4238 -8.9332 -3.8636 27 1 6.6940 -9.7776 -3.9801 28 1 6.2613 -7.5908 -3.0255 29 6 5.5137 -4.0737 -5.1168 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.2446 1.8171 -1.4312 34 1 1.3642 3.1285 -3.5102 35 1 2.2592 2.1111 -5.5633 36 1 3.0387 -0.2230 -5.5475 37 1 2.6267 -2.4909 -2.8481 38 1 4.5712 -4.4588 -2.3647 39 1 2.9527 -4.4759 -3.1297 40 1 3.6063 -6.1604 -4.7349 41 1 4.5010 -6.6887 -3.2704 42 1 7.6527 -5.3897 -4.1446 43 1 6.3869 -9.5017 -6.6977 44 1 5.2022 -4.0239 -6.1601 45 1 6.4422 -3.5193 -4.9804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434719297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:54 Heat of formation + Delta-G solvation = -25.268539 kcal Electronic energy + Delta-G solvation = -30120.945830 eV Core-core repulsion = 25912.481708 eV Total energy + Delta-G solvation = -4208.464122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.13125 -40.02367 -38.44721 -37.52583 -36.67387 -34.74200 -34.60516 -32.46085 -32.39860 -30.75690 -30.19296 -29.14020 -28.26422 -25.37811 -25.26566 -23.34003 -22.63694 -22.23970 -20.12798 -19.64130 -19.00304 -18.78570 -17.94944 -17.43373 -16.98284 -16.20068 -15.71880 -15.53486 -15.29926 -14.95435 -14.80234 -14.64331 -14.42444 -14.09058 -13.94701 -13.54008 -13.39460 -13.34658 -13.18026 -13.00372 -12.81447 -12.68503 -12.54101 -12.23859 -12.14907 -11.83792 -11.70525 -11.62548 -11.38837 -11.33185 -11.18893 -10.65175 -10.51686 -10.34057 -10.09794 -9.70424 -9.03883 -8.78823 -8.77496 -8.55270 -8.33272 -7.85110 -6.24687 -4.37136 1.15593 1.18357 1.71751 2.21434 2.66150 2.92716 3.23397 3.26574 3.39598 3.46572 3.58094 3.70353 4.00444 4.13769 4.32426 4.38779 4.58760 4.67435 4.90208 5.02490 5.03625 5.08035 5.08343 5.21948 5.25226 5.37180 5.49949 5.52358 5.64888 5.68691 5.79088 5.92017 6.03671 6.07264 6.33658 6.41256 6.43919 6.47494 6.55550 6.61110 6.65155 6.94244 7.03229 7.08571 7.17313 7.44506 8.06088 8.16220 8.66264 8.70158 8.85849 9.37952 10.85590 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.002915 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.245404 B = 9603.742992 C =11145.902366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.189 3.811 3 H 0.117 0.883 4 C 0.209 3.791 5 N -0.393 5.393 6 O -0.306 6.306 7 C 0.088 3.912 8 C -0.189 4.189 9 C -0.106 4.106 10 C -0.128 4.128 11 C -0.096 4.096 12 C 0.158 3.842 13 N -0.680 5.680 14 C 0.719 3.281 15 O -0.580 6.580 16 N -0.621 5.621 17 C 0.099 3.901 18 C -0.124 4.124 19 C 0.217 3.783 20 O -0.572 6.572 21 C -0.551 4.551 22 H 0.079 0.921 23 C 0.089 3.911 24 N -0.886 5.886 25 Si 0.871 3.129 26 H -0.285 1.285 27 H -0.298 1.298 28 H -0.223 1.223 29 C 0.114 3.886 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.161 0.839 37 H 0.409 0.591 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.365 0.635 43 H 0.267 0.733 44 H 0.075 0.925 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.660 20.347 10.965 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.129 3.871 3 H 0.135 0.865 4 C -0.110 4.110 5 N -0.070 5.070 6 O -0.219 6.219 7 C 0.041 3.959 8 C -0.208 4.208 9 C -0.126 4.126 10 C -0.147 4.147 11 C -0.116 4.116 12 C 0.062 3.938 13 N -0.327 5.327 14 C 0.422 3.578 15 O -0.459 6.459 16 N -0.357 5.357 17 C -0.024 4.024 18 C -0.162 4.162 19 C 0.177 3.823 20 O -0.379 6.379 21 C -0.588 4.588 22 H 0.098 0.902 23 C -0.116 4.116 24 N -0.522 5.522 25 Si 0.699 3.301 26 H -0.212 1.212 27 H -0.225 1.225 28 H -0.146 1.146 29 C -0.009 4.009 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.178 0.822 37 H 0.246 0.754 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.213 0.787 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.115 19.489 12.078 26.415 hybrid contribution -0.077 -0.398 0.432 0.593 sum -13.193 19.091 12.510 26.363 Atomic orbital electron populations 1.22382 0.91534 1.05040 1.04594 1.19341 0.95052 0.95007 0.77666 0.86534 1.28446 0.93803 0.94274 0.94520 1.81267 1.07281 1.06740 1.11729 1.86086 1.82011 1.38490 1.15313 1.18529 1.02248 0.90892 0.84182 1.20992 1.06809 0.92898 1.00123 1.20887 0.99733 0.99686 0.92258 1.21071 0.99970 0.95052 0.98640 1.21593 0.98044 0.94327 0.97641 1.16926 1.00663 0.84855 0.91385 1.42526 1.39682 1.09378 1.41127 1.15383 0.79321 0.81578 0.81546 1.90836 1.63049 1.52337 1.39646 1.47725 1.41244 1.09207 1.37506 1.22428 0.98312 0.88688 0.92974 1.23137 0.98687 0.94707 0.99678 1.19980 0.84598 0.89409 0.88356 1.86525 1.18752 1.88706 1.43897 1.21178 1.53180 0.91582 0.92890 0.90247 1.24944 0.92525 0.97086 0.97067 1.69923 1.46315 1.05679 1.30277 0.87122 0.77572 0.78766 0.86626 1.21201 1.22547 1.14573 1.22750 0.88728 0.95258 0.94126 0.89870 0.89433 0.90306 0.84902 0.85703 0.85493 0.82185 0.75439 0.91384 0.91997 0.89209 0.90517 0.78732 0.92312 0.90646 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.67 9.11 37.15 0.34 -0.33 16 2 C 0.19 1.15 2.69 -29.52 -0.08 1.07 16 3 H 0.12 0.42 6.30 -51.93 -0.33 0.10 16 4 C 0.21 1.89 15.03 -20.76 -0.31 1.57 16 5 N -0.39 -4.71 18.54 42.15 0.78 -3.93 16 6 O -0.31 -2.84 9.23 -19.68 -0.18 -3.02 16 7 C 0.09 0.88 6.59 -39.08 -0.26 0.63 16 8 C -0.19 -1.40 8.19 -39.46 -0.32 -1.72 16 9 C -0.11 -0.82 10.04 -39.57 -0.40 -1.22 16 10 C -0.13 -1.25 10.04 -39.58 -0.40 -1.64 16 11 C -0.10 -1.22 8.76 -39.42 -0.35 -1.57 16 12 C 0.16 2.03 6.42 -83.48 -0.54 1.49 16 13 N -0.68 -9.58 5.21 -14.10 -0.07 -9.65 16 14 C 0.72 12.62 8.36 -86.92 -0.73 11.89 16 15 O -0.58 -11.56 13.75 5.28 0.07 -11.49 16 16 N -0.62 -11.15 3.32 -176.09 -0.59 -11.74 16 17 C 0.10 1.61 6.61 -2.41 -0.02 1.59 16 18 C -0.12 -2.43 4.90 -24.46 -0.12 -2.55 16 19 C 0.22 4.69 0.67 -89.93 -0.06 4.63 16 20 O -0.57 -12.12 10.28 -35.23 -0.36 -12.48 16 21 C -0.55 -14.34 8.82 -34.44 -0.30 -14.65 16 22 H 0.08 2.26 7.81 -52.49 -0.41 1.85 16 23 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 24 N -0.89 -25.90 13.96 55.43 0.77 -25.12 16 25 Si 0.87 20.67 24.17 -169.99 -4.11 16.57 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.22 -5.12 5.12 56.52 0.29 -4.83 16 29 C 0.11 2.28 6.21 -3.06 -0.02 2.26 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.27 6.89 -51.92 -0.36 -0.09 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.13 0.54 5.45 -52.49 -0.29 0.25 16 34 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.16 2.42 5.74 -52.49 -0.30 2.12 16 37 H 0.41 5.07 6.87 -40.82 -0.28 4.79 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.82 7.23 -51.93 -0.38 0.44 16 40 H 0.09 1.77 8.04 -51.93 -0.42 1.35 16 41 H 0.08 1.53 4.97 -51.93 -0.26 1.27 16 42 H 0.37 6.77 9.08 45.56 0.41 7.18 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.08 1.61 7.65 -51.93 -0.40 1.21 16 45 H 0.06 1.17 8.06 -51.93 -0.42 0.75 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -33.49 368.65 -6.56 -40.05 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -4.78 Total: 11.47 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -3.65 Total: 3.79 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.90 Total: -50.44 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.47 Total: -26.99 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.11 Total: 16.57 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.49 -6.56 -40.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434719297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.784 kcal (2) G-P(sol) polarization free energy of solvation -33.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds