Wall clock time and date at job start Sat Apr 11 2020 07:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47664 * 2 1 4 4 C 1.47205 * 109.47286 * 120.00138 * 2 1 3 5 5 N 2.60802 * 109.46998 * 120.00139 * 2 1 3 6 6 O 1.42903 * 109.47074 * 239.99767 * 2 1 3 7 7 C 1.35980 * 116.99510 * 82.99897 * 6 2 1 8 8 C 1.38548 * 120.08745 * 357.36240 * 7 6 2 9 9 C 1.38251 * 120.01724 * 180.02562 * 8 7 6 10 10 C 1.38265 * 120.17416 * 359.95584 * 9 8 7 11 11 C 1.38210 * 120.16570 * 359.97438 * 10 9 8 12 12 C 1.38713 * 119.98136 * 0.02562 * 11 10 9 13 13 N 1.40170 * 120.08152 * 179.72380 * 12 11 10 14 14 C 1.34774 * 120.00303 * 28.67114 * 13 12 11 15 15 O 1.21595 * 120.00320 * 356.01588 * 14 13 12 16 16 N 1.34776 * 119.99946 * 176.01931 * 14 13 12 17 17 C 1.47428 * 125.64929 * 359.68569 * 16 14 13 18 18 C 1.55131 * 104.72155 * 155.81710 * 17 16 14 19 19 C 1.55158 * 101.48294 * 37.30060 * 18 17 16 20 20 O 1.42901 * 110.72331 * 82.69572 * 19 18 17 21 21 C 1.50704 * 110.87330 * 205.89649 * 19 18 17 22 22 H 1.07997 * 120.00374 * 117.50556 * 21 19 18 23 23 C 1.37884 * 119.99853 * 297.51031 * 21 19 18 24 24 N 1.31508 * 119.99963 * 183.19908 * 23 21 19 25 25 Si 1.86798 * 119.99800 * 3.19669 * 23 21 19 26 26 H 1.48495 * 109.47392 * 91.01251 * 25 23 21 27 27 H 1.48507 * 109.47085 * 211.00971 * 25 23 21 28 28 H 1.48506 * 109.47402 * 331.00987 * 25 23 21 29 29 C 1.47028 * 125.64824 * 180.02562 * 16 14 13 30 30 H 1.09003 * 109.46846 * 300.00296 * 1 2 3 31 31 H 1.09008 * 109.46942 * 59.99565 * 1 2 3 32 32 H 1.08990 * 109.47420 * 179.97438 * 1 2 3 33 33 H 1.07997 * 119.98793 * 0.04665 * 8 7 6 34 34 H 1.07998 * 119.90852 * 179.97438 * 9 8 7 35 35 H 1.08001 * 119.91602 * 180.02562 * 10 9 8 36 36 H 1.07998 * 120.00687 * 180.02562 * 11 10 9 37 37 H 0.97006 * 119.99493 * 208.66532 * 13 12 11 38 38 H 1.08992 * 110.36745 * 274.75069 * 17 16 14 39 39 H 1.09005 * 110.36349 * 37.07367 * 17 16 14 40 40 H 1.09000 * 111.19488 * 279.19523 * 18 17 16 41 41 H 1.08995 * 110.90484 * 155.27340 * 18 17 16 42 42 H 0.96695 * 114.00487 * 185.02454 * 20 19 18 43 43 H 0.96996 * 120.00247 * 179.97438 * 24 23 21 44 44 H 1.08994 * 109.87841 * 300.43725 * 29 16 14 45 45 H 1.08998 * 109.88062 * 61.44787 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0207 -0.6940 1.2019 5 7 2.3992 -1.2295 2.1294 6 8 2.0063 -0.6737 -1.1668 7 6 2.0728 0.0522 -2.3147 8 6 1.6370 1.3672 -2.3312 9 6 1.7048 2.1037 -3.4992 10 6 2.2078 1.5318 -4.6532 11 6 2.6459 0.2210 -4.6448 12 6 2.5809 -0.5241 -3.4765 13 7 3.0193 -1.8554 -3.4670 14 6 3.9863 -2.2526 -4.3176 15 8 4.4276 -1.4755 -5.1422 16 7 4.4642 -3.5112 -4.2543 17 6 4.0261 -4.5499 -3.3042 18 6 4.3677 -5.8923 -4.0025 19 6 5.7108 -5.5458 -4.6979 20 8 6.8008 -5.6688 -3.7820 21 6 5.9310 -6.4194 -5.9060 22 1 5.9964 -5.9757 -6.8885 23 6 6.0488 -7.7851 -5.7570 24 7 6.3036 -8.5410 -6.8025 25 14 5.8466 -8.5614 -4.0701 26 1 4.4238 -8.9332 -3.8636 27 1 6.6940 -9.7776 -3.9801 28 1 6.2613 -7.5908 -3.0255 29 6 5.5137 -4.0737 -5.1168 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.2446 1.8171 -1.4312 34 1 1.3642 3.1285 -3.5102 35 1 2.2592 2.1111 -5.5633 36 1 3.0387 -0.2230 -5.5475 37 1 2.6267 -2.4909 -2.8481 38 1 4.5712 -4.4588 -2.3647 39 1 2.9527 -4.4759 -3.1297 40 1 3.6063 -6.1604 -4.7349 41 1 4.5010 -6.6887 -3.2704 42 1 7.6527 -5.3897 -4.1446 43 1 6.3869 -9.5017 -6.6977 44 1 5.2022 -4.0239 -6.1601 45 1 6.4422 -3.5193 -4.9804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434719297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:53 Heat of formation + Delta-G solvation = -50.609273 kcal Electronic energy + Delta-G solvation = -30122.044687 eV Core-core repulsion = 25912.481708 eV Total energy + Delta-G solvation = -4209.562979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.06703 -41.10409 -39.67406 -38.58275 -37.43419 -36.24755 -35.78102 -34.51752 -32.92702 -32.10577 -31.04976 -30.26777 -29.70498 -27.08013 -25.75193 -24.56624 -23.74793 -23.05887 -21.65422 -21.07187 -19.95670 -19.47799 -19.41651 -18.83815 -17.93401 -17.10935 -16.93841 -16.78875 -16.54715 -16.42696 -15.97298 -15.67860 -15.23819 -15.17858 -15.01736 -14.83358 -14.71278 -14.46994 -14.21628 -14.11058 -14.04001 -13.76953 -13.43722 -13.25412 -13.16743 -13.06008 -12.87703 -12.76564 -12.48316 -12.41103 -12.27657 -12.19543 -11.87610 -11.80228 -11.53091 -11.01654 -10.92918 -10.81942 -10.35801 -9.80136 -9.47833 -8.75648 -8.37031 -6.52851 0.37860 0.46852 1.05181 1.36952 1.43034 1.46140 1.56713 1.68755 1.98210 2.30578 2.39216 2.79257 2.89862 2.91487 2.98794 3.51278 3.69605 3.75064 3.94102 3.97583 4.00369 4.10322 4.18466 4.31066 4.39158 4.47339 4.54309 4.60091 4.72611 4.76928 4.81167 4.90230 4.92808 5.00752 5.02717 5.19403 5.28939 5.38761 5.42004 5.49293 5.55652 5.69829 5.85132 5.95967 6.06068 6.27840 6.38174 6.58243 6.79698 7.10439 7.28409 7.36198 8.77182 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.002915 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.245404 B = 9603.742992 C =11145.902366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.185 3.815 3 H 0.152 0.848 4 C 0.233 3.767 5 N -0.452 5.452 6 O -0.323 6.323 7 C 0.097 3.903 8 C -0.177 4.177 9 C -0.091 4.091 10 C -0.137 4.137 11 C -0.120 4.120 12 C 0.119 3.881 13 N -0.667 5.667 14 C 0.716 3.284 15 O -0.612 6.612 16 N -0.626 5.626 17 C 0.108 3.892 18 C -0.127 4.127 19 C 0.218 3.782 20 O -0.572 6.572 21 C -0.550 4.550 22 H 0.037 0.963 23 C 0.037 3.963 24 N -0.936 5.936 25 Si 0.935 3.065 26 H -0.272 1.272 27 H -0.308 1.308 28 H -0.207 1.207 29 C 0.124 3.876 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.178 0.822 34 H 0.163 0.837 35 H 0.139 0.861 36 H 0.125 0.875 37 H 0.417 0.583 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.376 0.624 43 H 0.268 0.732 44 H 0.051 0.949 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.086 23.223 14.296 31.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.127 3.873 3 H 0.169 0.831 4 C -0.085 4.085 5 N -0.130 5.130 6 O -0.236 6.236 7 C 0.050 3.950 8 C -0.196 4.196 9 C -0.110 4.110 10 C -0.156 4.156 11 C -0.141 4.141 12 C 0.023 3.977 13 N -0.315 5.315 14 C 0.418 3.582 15 O -0.493 6.493 16 N -0.362 5.362 17 C -0.014 4.014 18 C -0.165 4.165 19 C 0.178 3.822 20 O -0.380 6.380 21 C -0.588 4.588 22 H 0.056 0.944 23 C -0.163 4.163 24 N -0.575 5.575 25 Si 0.760 3.240 26 H -0.198 1.198 27 H -0.236 1.236 28 H -0.129 1.129 29 C 0.000 4.000 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.195 0.805 34 H 0.181 0.819 35 H 0.157 0.843 36 H 0.143 0.857 37 H 0.255 0.745 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.225 0.775 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.582 22.406 15.446 31.360 hybrid contribution 0.647 -1.112 -0.684 1.457 sum -14.936 21.294 14.762 29.907 Atomic orbital electron populations 1.22420 0.89348 1.04992 1.06376 1.19854 0.96474 0.95675 0.75331 0.83123 1.29015 0.92184 0.92946 0.94374 1.81294 1.09324 1.08648 1.13776 1.86048 1.82284 1.39446 1.15834 1.18507 1.01411 0.91640 0.83473 1.21488 1.04961 0.91459 1.01662 1.21337 0.97365 1.01155 0.91116 1.21283 0.99970 0.93873 1.00451 1.21406 0.99857 0.95993 0.96803 1.17188 1.03214 0.84377 0.92882 1.42299 1.38533 1.10440 1.40215 1.15527 0.79816 0.81019 0.81800 1.90826 1.64252 1.53141 1.41044 1.47638 1.41024 1.09923 1.37601 1.22461 1.00747 0.85986 0.92227 1.23078 0.96914 0.96781 0.99701 1.19799 0.85857 0.89355 0.87220 1.86468 1.19298 1.88831 1.43356 1.21404 1.52060 0.92224 0.93088 0.94428 1.25761 0.92294 0.97640 1.00616 1.70059 1.48691 1.06032 1.32713 0.86150 0.77972 0.77492 0.82402 1.19764 1.23585 1.12905 1.22379 0.89581 0.94705 0.93355 0.87696 0.87925 0.91423 0.80537 0.81921 0.84282 0.85720 0.74528 0.90316 0.88373 0.89846 0.90127 0.77508 0.92282 0.93105 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.50 9.11 71.98 0.66 0.15 16 2 C 0.19 1.45 2.69 28.79 0.08 1.53 16 3 H 0.15 0.18 6.30 -2.39 -0.02 0.17 16 4 C 0.23 3.60 15.03 89.44 1.34 4.95 16 5 N -0.45 -10.22 18.54 20.01 0.37 -9.85 16 6 O -0.32 -4.91 9.23 -93.33 -0.86 -5.77 16 7 C 0.10 1.62 6.59 22.60 0.15 1.77 16 8 C -0.18 -1.71 8.19 22.35 0.18 -1.52 16 9 C -0.09 -0.98 10.04 22.28 0.22 -0.75 16 10 C -0.14 -2.40 10.04 22.27 0.22 -2.18 16 11 C -0.12 -3.09 8.76 22.38 0.20 -2.89 16 12 C 0.12 2.92 6.42 38.17 0.25 3.16 16 13 N -0.67 -18.38 5.21 -316.79 -1.65 -20.03 16 14 C 0.72 25.44 8.36 179.06 1.50 26.93 16 15 O -0.61 -25.50 13.75 -4.01 -0.06 -25.55 16 16 N -0.63 -22.41 3.32 -829.29 -2.76 -25.17 16 17 C 0.11 3.30 6.61 86.93 0.57 3.87 16 18 C -0.13 -4.81 4.90 32.06 0.16 -4.65 16 19 C 0.22 9.50 0.67 -10.35 -0.01 9.50 16 20 O -0.57 -23.63 10.28 -148.98 -1.53 -25.16 16 21 C -0.55 -29.75 8.82 25.60 0.23 -29.52 16 22 H 0.04 2.29 7.81 -2.91 -0.02 2.27 16 23 C 0.04 2.08 5.47 84.66 0.46 2.54 16 24 N -0.94 -56.80 13.96 21.45 0.30 -56.51 16 25 Si 0.93 42.82 24.17 68.60 1.66 44.47 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.31 -14.53 7.11 99.48 0.71 -13.82 16 28 H -0.21 -8.88 5.12 99.48 0.51 -8.37 16 29 C 0.12 5.11 6.21 86.73 0.54 5.65 16 30 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.10 0.04 6.89 -2.38 -0.02 0.03 16 32 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.18 0.11 5.45 -2.91 -0.02 0.10 16 34 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.13 4.06 5.74 -2.91 -0.02 4.05 16 37 H 0.42 9.67 6.87 -92.70 -0.64 9.04 16 38 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.10 2.30 7.23 -2.38 -0.02 2.29 16 40 H 0.08 3.25 8.04 -2.39 -0.02 3.23 16 41 H 0.08 3.00 4.97 -2.39 -0.01 2.99 16 42 H 0.38 13.76 9.08 -74.06 -0.67 13.08 16 43 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 44 H 0.05 2.32 7.65 -2.39 -0.02 2.30 16 45 H 0.06 2.40 8.06 -2.39 -0.02 2.38 16 Total: -1.00 -78.60 368.65 1.78 -76.82 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.43 Total: 28.21 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 6.75 Total: 18.54 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -3.74 Total: -111.55 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -2.45 Total: -56.49 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.66 Total: 44.47 kcal Total: -78.60 1.78 -76.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434719297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.206 kcal (2) G-P(sol) polarization free energy of solvation -78.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds