Wall clock time and date at job start Sat Apr 11 2020 07:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46690 * 2 1 4 4 C 1.47199 * 109.46790 * 240.00345 * 2 1 3 5 5 N 2.60797 * 109.47013 * 240.00069 * 2 1 3 6 6 O 1.42896 * 109.47318 * 119.99982 * 2 1 3 7 7 C 1.35983 * 116.99690 * 265.70819 * 6 2 1 8 8 C 1.38543 * 120.08717 * 5.68388 * 7 6 2 9 9 C 1.38245 * 120.01689 * 180.30040 * 8 7 6 10 10 C 1.38271 * 120.17590 * 359.67493 * 9 8 7 11 11 C 1.38210 * 120.16333 * 359.97438 * 10 9 8 12 12 C 1.38705 * 119.98132 * 0.02654 * 11 10 9 13 13 N 1.40165 * 120.08959 * 180.02562 * 12 11 10 14 14 C 1.34782 * 120.00004 * 24.66946 * 13 12 11 15 15 O 1.21598 * 119.99550 * 5.91211 * 14 13 12 16 16 N 1.34777 * 120.00179 * 185.92029 * 14 13 12 17 17 C 1.47421 * 125.64719 * 0.02562 * 16 14 13 18 18 C 1.54907 * 104.82967 * 204.09104 * 17 16 14 19 19 C 1.55159 * 101.58460 * 322.99465 * 18 17 16 20 20 O 1.42902 * 110.71722 * 277.13557 * 19 18 17 21 21 C 1.50703 * 110.72094 * 154.04408 * 19 18 17 22 22 H 1.08000 * 119.99874 * 359.97438 * 21 19 18 23 23 C 1.37870 * 119.99825 * 179.97438 * 21 19 18 24 24 N 1.31514 * 120.00340 * 359.97438 * 23 21 19 25 25 Si 1.86809 * 119.99824 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47073 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46805 * 120.00149 * 25 23 21 28 28 H 1.48503 * 109.46937 * 239.99991 * 25 23 21 29 29 C 1.47027 * 125.64551 * 179.71405 * 16 14 13 30 30 H 1.09002 * 109.47146 * 299.99886 * 1 2 3 31 31 H 1.08995 * 109.47579 * 59.99738 * 1 2 3 32 32 H 1.09006 * 109.47179 * 180.02562 * 1 2 3 33 33 H 1.08002 * 119.98921 * 359.96851 * 8 7 6 34 34 H 1.08005 * 119.91420 * 179.69840 * 9 8 7 35 35 H 1.08001 * 119.91824 * 180.02562 * 10 9 8 36 36 H 1.07994 * 120.00807 * 180.02562 * 11 10 9 37 37 H 0.97001 * 120.00806 * 204.66947 * 13 12 11 38 38 H 1.08994 * 110.37083 * 322.93644 * 17 16 14 39 39 H 1.09001 * 110.36279 * 85.25684 * 17 16 14 40 40 H 1.09005 * 111.00272 * 81.06916 * 18 17 16 41 41 H 1.08997 * 111.00702 * 204.87742 * 18 17 16 42 42 H 0.96698 * 113.99879 * 180.02562 * 20 19 18 43 43 H 0.96997 * 120.00250 * 179.97438 * 24 23 21 44 44 H 1.08994 * 109.87929 * 298.39342 * 29 16 14 45 45 H 1.08997 * 109.88148 * 59.55744 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0206 -0.6938 -1.2019 5 7 2.3993 -1.2294 -2.1294 6 8 2.0064 -0.6736 1.1667 7 6 2.2976 0.0969 2.2487 8 6 2.0187 1.4538 2.2304 9 6 2.3211 2.2369 3.3288 10 6 2.8960 1.6685 4.4505 11 6 3.1708 0.3143 4.4795 12 6 2.8701 -0.4776 3.3811 13 7 3.1474 -1.8513 3.4083 14 6 3.2247 -2.5000 4.5872 15 8 2.9489 -1.9198 5.6196 16 7 3.6080 -3.7917 4.6218 17 6 3.9700 -4.6121 3.4516 18 6 3.7220 -6.0739 3.9002 19 6 4.1737 -6.0254 5.3838 20 8 5.5917 -6.1700 5.4855 21 6 3.4722 -7.0882 6.1898 22 1 2.7647 -7.7495 5.7116 23 6 3.7336 -7.2162 7.5374 24 7 4.5954 -6.4113 8.1195 25 14 2.8635 -8.5332 8.5365 26 1 1.9504 -9.3022 7.6533 27 1 3.8697 -9.4516 9.1276 28 1 2.0792 -7.8929 9.6229 29 6 3.7403 -4.6140 5.8333 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.5697 1.9009 1.3557 34 1 2.1074 3.2955 3.3108 35 1 3.1302 2.2841 5.3064 36 1 3.6195 -0.1271 5.3570 37 1 3.2836 -2.3352 2.5787 38 1 3.3342 -4.3628 2.6021 39 1 5.0197 -4.4665 3.1965 40 1 2.6661 -6.3329 3.8215 41 1 4.3361 -6.7681 3.3267 42 1 5.9253 -6.1468 6.3929 43 1 4.7790 -6.5011 9.0677 44 1 4.4950 -4.1846 6.4921 45 1 2.7823 -4.6695 6.3502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434719300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:29:58 Heat of formation + Delta-G solvation = -38.947021 kcal Electronic energy + Delta-G solvation = -30073.459868 eV Core-core repulsion = 25864.402603 eV Total energy + Delta-G solvation = -4209.057266 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.00783 -39.82390 -38.24338 -37.28778 -36.60800 -34.57342 -34.34752 -32.35405 -32.19155 -30.60721 -30.03995 -28.94342 -27.78525 -25.27273 -25.16801 -23.36566 -22.58692 -22.12868 -19.79380 -19.52180 -18.91527 -18.72502 -17.65512 -17.15059 -16.82595 -15.97400 -15.77494 -15.41969 -15.03478 -14.94193 -14.66299 -14.41430 -14.31928 -14.02800 -13.71015 -13.49907 -13.27991 -13.16232 -12.98479 -12.90969 -12.70100 -12.55469 -12.27290 -12.10998 -11.78694 -11.70540 -11.56008 -11.40628 -11.27896 -11.09274 -10.84190 -10.69375 -10.50055 -10.43546 -10.18575 -9.62249 -9.37934 -8.70219 -8.67739 -8.36026 -8.10968 -7.66279 -6.32398 -4.40868 1.25854 1.27130 1.79609 2.25139 2.85048 2.99616 3.19005 3.27831 3.31246 3.39133 3.50815 3.85180 4.16343 4.21247 4.27250 4.39150 4.66752 4.76522 4.94966 4.98766 5.11888 5.18234 5.31010 5.33890 5.43908 5.59237 5.62810 5.71846 5.77576 5.96098 5.97656 6.07664 6.16498 6.43801 6.45100 6.58197 6.65741 6.72779 6.81225 6.88926 6.98679 7.15245 7.17912 7.26843 7.47180 7.70864 7.97410 8.30563 8.62582 8.88196 9.28213 9.40713 10.75488 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.002724 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.403188 B =10276.205694 C =11382.325657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.185 3.815 3 H 0.120 0.880 4 C 0.206 3.794 5 N -0.397 5.397 6 O -0.304 6.304 7 C 0.081 3.919 8 C -0.187 4.187 9 C -0.111 4.111 10 C -0.125 4.125 11 C -0.099 4.099 12 C 0.166 3.834 13 N -0.681 5.681 14 C 0.714 3.286 15 O -0.579 6.579 16 N -0.621 5.621 17 C 0.099 3.901 18 C -0.116 4.116 19 C 0.249 3.751 20 O -0.586 6.586 21 C -0.536 4.536 22 H 0.068 0.932 23 C 0.070 3.930 24 N -0.895 5.895 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.281 1.281 29 C 0.119 3.881 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.158 0.842 37 H 0.408 0.592 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.387 0.613 43 H 0.271 0.729 44 H 0.065 0.935 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.829 16.799 -12.891 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.125 3.875 3 H 0.137 0.863 4 C -0.113 4.113 5 N -0.074 5.074 6 O -0.217 6.217 7 C 0.034 3.966 8 C -0.206 4.206 9 C -0.130 4.130 10 C -0.144 4.144 11 C -0.120 4.120 12 C 0.069 3.931 13 N -0.328 5.328 14 C 0.417 3.583 15 O -0.457 6.457 16 N -0.357 5.357 17 C -0.024 4.024 18 C -0.154 4.154 19 C 0.208 3.792 20 O -0.396 6.396 21 C -0.575 4.575 22 H 0.086 0.914 23 C -0.133 4.133 24 N -0.535 5.535 25 Si 0.732 3.268 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.207 1.207 29 C -0.003 4.003 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.176 0.824 37 H 0.244 0.756 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.239 0.761 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.385 16.150 -13.952 22.011 hybrid contribution -0.537 -0.491 1.083 1.305 sum -5.922 15.659 -12.869 21.116 Atomic orbital electron populations 1.22277 0.91222 1.05001 1.04390 1.19462 0.95311 0.95178 0.77546 0.86277 1.28684 0.93746 0.94249 0.94602 1.81249 1.07505 1.06984 1.11709 1.86117 1.81278 1.34835 1.19454 1.18515 1.00245 0.90518 0.87339 1.20929 1.06888 0.91909 1.00841 1.20849 0.99649 0.99558 0.92952 1.21049 1.00370 0.94512 0.98466 1.21491 0.99245 0.92798 0.98417 1.16953 0.99550 0.83105 0.93521 1.42638 1.74133 1.07004 1.09020 1.15475 0.78841 0.80894 0.83126 1.90851 1.56604 1.66141 1.32140 1.48005 1.68061 1.08589 1.11081 1.22324 0.99465 0.92714 0.87880 1.22741 1.01322 0.93324 0.98019 1.19491 0.80112 0.89546 0.90018 1.86076 1.22736 1.96092 1.34733 1.21549 1.25418 1.16788 0.93719 0.91393 1.25079 0.94624 0.95845 0.97732 1.69575 1.34056 1.37534 1.12296 0.86329 0.79452 0.81186 0.79836 1.19576 1.20721 1.20715 1.23001 1.01679 0.91443 0.84162 0.89544 0.89947 0.90341 0.84962 0.85765 0.85538 0.82445 0.75594 0.92468 0.91611 0.90460 0.90397 0.76131 0.91905 0.91694 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 9.46 37.16 0.35 -0.46 16 2 C 0.18 1.21 2.66 -29.52 -0.08 1.13 16 3 H 0.12 0.47 5.73 -51.93 -0.30 0.17 16 4 C 0.21 1.89 15.03 -20.76 -0.31 1.57 16 5 N -0.40 -4.72 18.54 42.15 0.78 -3.94 16 6 O -0.30 -3.04 9.15 -19.69 -0.18 -3.22 16 7 C 0.08 0.89 6.69 -39.08 -0.26 0.63 16 8 C -0.19 -1.56 8.92 -39.47 -0.35 -1.91 16 9 C -0.11 -0.96 10.04 -39.57 -0.40 -1.36 16 10 C -0.13 -1.36 10.04 -39.58 -0.40 -1.76 16 11 C -0.10 -1.41 8.72 -39.42 -0.34 -1.75 16 12 C 0.17 2.35 6.45 -83.48 -0.54 1.81 16 13 N -0.68 -10.59 5.25 -14.10 -0.07 -10.67 16 14 C 0.71 13.96 8.29 -86.91 -0.72 13.24 16 15 O -0.58 -12.92 13.85 5.28 0.07 -12.85 16 16 N -0.62 -12.50 3.33 -176.24 -0.59 -13.09 16 17 C 0.10 1.72 6.62 -2.53 -0.02 1.70 16 18 C -0.12 -2.27 6.23 -24.58 -0.15 -2.42 16 19 C 0.25 5.90 0.86 -89.93 -0.08 5.82 16 20 O -0.59 -14.57 13.07 -35.23 -0.46 -15.03 16 21 C -0.54 -13.77 8.12 -34.44 -0.28 -14.05 16 22 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 23 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 24 N -0.90 -23.42 10.97 55.43 0.61 -22.81 16 25 Si 0.90 20.20 29.54 -169.99 -5.02 15.17 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 C 0.12 2.81 5.54 -3.06 -0.02 2.79 16 30 H 0.09 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.13 0.63 5.87 -52.49 -0.31 0.32 16 34 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.16 2.65 5.79 -52.49 -0.30 2.35 16 37 H 0.41 5.62 6.79 -40.82 -0.28 5.34 16 38 H 0.06 0.81 7.21 -51.93 -0.37 0.44 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 1.45 8.03 -51.93 -0.42 1.04 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.39 9.92 6.98 45.56 0.32 10.24 16 43 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 44 H 0.06 1.67 8.07 -51.93 -0.42 1.25 16 45 H 0.07 1.71 7.82 -51.93 -0.41 1.30 16 LS Contribution 379.07 15.07 5.71 5.71 Total: -1.00 -30.83 379.07 -7.82 -38.64 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -4.98 Total: 15.38 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -3.69 Total: 6.68 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.73 Total: -50.50 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -0.57 Total: -31.10 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.83 -7.82 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434719300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.304 kcal (2) G-P(sol) polarization free energy of solvation -30.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds