Wall clock time and date at job start Sat Apr 11 2020 07:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47099 * 2 1 4 4 C 1.47197 * 109.47166 * 239.99888 * 2 1 3 5 5 N 2.60806 * 109.47195 * 239.99845 * 2 1 3 6 6 O 1.42902 * 109.47118 * 119.99652 * 2 1 3 7 7 C 1.35975 * 117.00118 * 266.22678 * 6 2 1 8 8 C 1.38543 * 120.08099 * 6.16991 * 7 6 2 9 9 C 1.38254 * 120.01415 * 179.74940 * 8 7 6 10 10 C 1.38272 * 120.17435 * 0.50623 * 9 8 7 11 11 C 1.38209 * 120.16395 * 359.77014 * 10 9 8 12 12 C 1.38709 * 119.98114 * 359.97438 * 11 10 9 13 13 N 1.40171 * 120.08506 * 180.02562 * 12 11 10 14 14 C 1.34775 * 120.00196 * 34.55248 * 13 12 11 15 15 O 1.21592 * 119.99634 * 355.68219 * 14 13 12 16 16 N 1.34777 * 120.00056 * 175.67555 * 14 13 12 17 17 C 1.47423 * 125.64559 * 359.69650 * 16 14 13 18 18 C 1.55131 * 104.71793 * 155.81986 * 17 16 14 19 19 C 1.55150 * 101.49120 * 37.29053 * 18 17 16 20 20 O 1.42901 * 110.71851 * 82.69739 * 19 18 17 21 21 C 1.50693 * 110.87740 * 205.89725 * 19 18 17 22 22 H 1.07997 * 120.00058 * 355.07233 * 21 19 18 23 23 C 1.37878 * 120.00260 * 175.06258 * 21 19 18 24 24 N 1.31517 * 119.99858 * 0.02562 * 23 21 19 25 25 Si 1.86795 * 120.00123 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47336 * 90.00366 * 25 23 21 27 27 H 1.48508 * 109.47236 * 210.00402 * 25 23 21 28 28 H 1.48499 * 109.47418 * 330.00115 * 25 23 21 29 29 C 1.47025 * 125.64791 * 180.02562 * 16 14 13 30 30 H 1.09001 * 109.47099 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.46968 * 300.00273 * 1 2 3 32 32 H 1.08994 * 109.46932 * 60.00478 * 1 2 3 33 33 H 1.08003 * 119.99469 * 359.97438 * 8 7 6 34 34 H 1.07999 * 119.91249 * 180.23495 * 9 8 7 35 35 H 1.08007 * 119.92067 * 179.75016 * 10 9 8 36 36 H 1.08000 * 120.00905 * 179.97438 * 11 10 9 37 37 H 0.97000 * 119.99617 * 214.55636 * 13 12 11 38 38 H 1.08997 * 110.36962 * 274.74080 * 17 16 14 39 39 H 1.08993 * 110.36670 * 37.07065 * 17 16 14 40 40 H 1.09007 * 111.19275 * 279.18884 * 18 17 16 41 41 H 1.08999 * 110.90710 * 155.27714 * 18 17 16 42 42 H 0.96701 * 114.00355 * 185.02766 * 20 19 18 43 43 H 0.97002 * 119.99668 * 179.97438 * 24 23 21 44 44 H 1.08999 * 109.87894 * 300.44411 * 29 16 14 45 45 H 1.09005 * 109.88194 * 61.45049 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 -1.2018 5 7 2.3994 -1.2295 -2.1294 6 8 2.0064 -0.6736 1.1668 7 6 2.2873 0.0957 2.2523 8 6 1.9892 1.4486 2.2405 9 6 2.2707 2.2285 3.3468 10 6 2.8594 1.6640 4.4634 11 6 3.1652 0.3163 4.4809 12 6 2.8808 -0.4734 3.3766 13 7 3.1895 -1.8406 3.3922 14 6 3.0894 -2.5410 4.5392 15 8 2.8076 -1.9721 5.5763 16 7 3.3015 -3.8720 4.5368 17 6 3.6420 -4.6855 3.3555 18 6 4.3690 -5.9297 3.9301 19 6 3.5671 -6.1814 5.2342 20 8 2.3760 -6.9219 4.9603 21 6 4.4137 -6.8960 6.2557 22 1 5.4074 -7.2296 5.9955 23 6 3.9198 -7.1239 7.5227 24 7 2.7096 -6.7180 7.8395 25 14 4.9695 -8.0091 8.7891 26 1 5.7705 -7.0163 9.5493 27 1 4.0913 -8.7571 9.7243 28 1 5.8812 -8.9577 8.1006 29 6 3.2247 -4.7540 5.7106 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.5334 1.8935 1.3682 34 1 2.0341 3.2822 3.3373 35 1 3.0813 2.2779 5.3239 36 1 3.6254 -0.1219 5.3542 37 1 3.4752 -2.2825 2.5773 38 1 2.7370 -4.9831 2.8260 39 1 4.3059 -4.1315 2.6920 40 1 5.4136 -5.7090 4.1502 41 1 4.2854 -6.7775 3.2501 42 1 1.8007 -7.0397 5.7286 43 1 2.3621 -6.8786 8.7308 44 1 3.9440 -4.4322 6.4637 45 1 2.2174 -4.7309 6.1264 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434719304.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:30:02 Heat of formation + Delta-G solvation = -40.057995 kcal Electronic energy + Delta-G solvation = -30126.016105 eV Core-core repulsion = 25916.910664 eV Total energy + Delta-G solvation = -4209.105441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.98301 -39.78287 -38.23647 -37.27381 -36.60270 -34.53123 -34.30364 -32.34052 -32.24154 -30.59066 -30.03859 -28.93068 -27.73360 -25.25671 -25.14042 -23.34428 -22.57244 -22.11538 -19.80404 -19.52190 -18.88090 -18.71459 -17.65330 -17.08854 -16.82138 -15.95878 -15.69950 -15.39800 -15.20355 -14.91382 -14.61152 -14.43588 -14.23706 -14.05428 -13.68757 -13.44352 -13.28773 -13.13857 -12.98607 -12.88329 -12.72156 -12.54086 -12.25064 -12.07753 -11.83014 -11.68964 -11.49108 -11.41090 -11.27179 -11.05879 -10.83572 -10.70318 -10.50655 -10.30661 -10.16656 -9.62104 -9.34632 -8.69817 -8.69213 -8.34926 -8.10955 -7.70492 -6.29693 -4.38329 1.23788 1.25666 1.80705 2.26051 2.88414 3.00905 3.21009 3.28500 3.31261 3.43290 3.51478 3.83197 4.17667 4.23242 4.29593 4.40291 4.67005 4.76730 4.97778 4.99458 5.13180 5.18803 5.31232 5.32688 5.44109 5.61383 5.63535 5.70868 5.76476 5.97351 5.98883 6.07625 6.16389 6.42488 6.47020 6.57857 6.66505 6.72646 6.83881 6.90306 6.99616 7.16831 7.19158 7.27710 7.51040 7.71724 8.01159 8.34206 8.65069 8.92955 9.27817 9.36679 10.78113 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014942 B = 0.002770 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.425713 B =10107.377759 C =11387.671627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.184 3.816 3 H 0.120 0.880 4 C 0.207 3.793 5 N -0.397 5.397 6 O -0.301 6.301 7 C 0.089 3.911 8 C -0.191 4.191 9 C -0.104 4.104 10 C -0.130 4.130 11 C -0.086 4.086 12 C 0.159 3.841 13 N -0.684 5.684 14 C 0.715 3.285 15 O -0.581 6.581 16 N -0.623 5.623 17 C 0.100 3.900 18 C -0.115 4.115 19 C 0.248 3.752 20 O -0.584 6.584 21 C -0.538 4.538 22 H 0.067 0.933 23 C 0.071 3.929 24 N -0.893 5.893 25 Si 0.904 3.096 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.272 1.272 29 C 0.122 3.878 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.152 0.848 37 H 0.407 0.593 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.382 0.618 43 H 0.270 0.730 44 H 0.067 0.933 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 17.652 -12.518 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.124 3.876 3 H 0.137 0.863 4 C -0.112 4.112 5 N -0.074 5.074 6 O -0.214 6.214 7 C 0.042 3.958 8 C -0.210 4.210 9 C -0.124 4.124 10 C -0.149 4.149 11 C -0.107 4.107 12 C 0.062 3.938 13 N -0.332 5.332 14 C 0.417 3.583 15 O -0.459 6.459 16 N -0.359 5.359 17 C -0.023 4.023 18 C -0.153 4.153 19 C 0.208 3.792 20 O -0.393 6.393 21 C -0.576 4.576 22 H 0.085 0.915 23 C -0.133 4.133 24 N -0.532 5.532 25 Si 0.731 3.269 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.197 1.197 29 C 0.000 4.000 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.151 0.849 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.170 0.830 37 H 0.243 0.757 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.233 0.767 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.318 16.984 -13.559 21.856 hybrid contribution 0.151 -0.294 1.196 1.241 sum -2.167 16.690 -12.363 20.883 Atomic orbital electron populations 1.22282 0.91220 1.05064 1.04377 1.19472 0.95360 0.95117 0.77610 0.86314 1.28670 0.93741 0.94240 0.94586 1.81252 1.07533 1.06948 1.11706 1.86155 1.81255 1.34821 1.19178 1.18669 0.99026 0.90589 0.87518 1.20958 1.07155 0.92077 1.00839 1.20867 0.99094 0.99599 0.92800 1.21047 1.00598 0.94626 0.98619 1.21368 0.98639 0.92637 0.98013 1.16904 0.99763 0.83354 0.93744 1.42583 1.71119 1.07250 1.12270 1.15470 0.78693 0.80877 0.83217 1.90876 1.55750 1.68500 1.30775 1.48010 1.71303 1.04218 1.12398 1.22351 0.98902 0.92920 0.88133 1.22766 0.98833 0.95482 0.98261 1.19504 0.83377 0.86068 0.90263 1.86112 1.35509 1.76911 1.40792 1.21476 1.01692 1.38349 0.96069 0.91522 1.25074 0.95203 0.94580 0.98411 1.69697 1.15909 1.45899 1.21659 0.86398 0.80066 0.79665 0.80754 1.20411 1.20983 1.19711 1.22951 1.01964 0.89951 0.85092 0.90292 0.89547 0.89944 0.84937 0.85710 0.85520 0.83043 0.75742 0.91636 0.92566 0.90373 0.90486 0.76727 0.91968 0.91501 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 9.41 37.16 0.35 -0.52 16 2 C 0.18 1.25 2.65 -29.52 -0.08 1.17 16 3 H 0.12 0.47 5.78 -51.93 -0.30 0.17 16 4 C 0.21 1.92 15.03 -20.76 -0.31 1.61 16 5 N -0.40 -4.77 18.54 42.16 0.78 -3.99 16 6 O -0.30 -3.10 9.29 -19.66 -0.18 -3.28 16 7 C 0.09 0.99 6.69 -39.08 -0.26 0.72 16 8 C -0.19 -1.60 8.80 -39.46 -0.35 -1.94 16 9 C -0.10 -0.90 10.04 -39.56 -0.40 -1.29 16 10 C -0.13 -1.39 10.04 -39.58 -0.40 -1.79 16 11 C -0.09 -1.20 8.70 -39.42 -0.34 -1.55 16 12 C 0.16 2.24 6.33 -83.48 -0.53 1.71 16 13 N -0.68 -10.65 5.15 -14.10 -0.07 -10.73 16 14 C 0.71 14.09 8.34 -86.92 -0.72 13.37 16 15 O -0.58 -13.13 14.09 5.28 0.07 -13.06 16 16 N -0.62 -12.63 3.32 -176.10 -0.59 -13.22 16 17 C 0.10 1.74 6.62 -2.41 -0.02 1.72 16 18 C -0.12 -2.25 6.24 -24.47 -0.15 -2.41 16 19 C 0.25 5.89 0.85 -89.95 -0.08 5.82 16 20 O -0.58 -14.47 13.07 -35.23 -0.46 -14.93 16 21 C -0.54 -13.85 8.13 -34.44 -0.28 -14.13 16 22 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 23 C 0.07 1.83 5.28 -17.82 -0.09 1.73 16 24 N -0.89 -23.51 10.96 55.43 0.61 -22.91 16 25 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 C 0.12 2.91 5.23 -3.06 -0.02 2.89 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.40 7.98 -51.93 -0.41 -0.01 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.13 0.64 5.84 -52.48 -0.31 0.33 16 34 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.15 2.47 6.19 -52.49 -0.32 2.15 16 37 H 0.41 5.58 7.01 -40.82 -0.29 5.30 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 0.79 7.22 -51.93 -0.38 0.42 16 40 H 0.08 1.47 8.05 -51.93 -0.42 1.05 16 41 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.38 9.70 7.45 45.56 0.34 10.04 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.07 1.73 7.81 -51.93 -0.41 1.33 16 45 H 0.07 1.71 7.92 -51.93 -0.41 1.30 16 LS Contribution 379.69 15.07 5.72 5.72 Total: -1.00 -31.21 379.69 -7.79 -39.00 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -4.98 Total: 15.01 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -3.67 Total: 7.12 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.73 Total: -50.84 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.57 Total: -31.27 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.21 -7.79 -39.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434719304.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.058 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds