Wall clock time and date at job start Sat Apr 11 2020 07:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46852 * 2 1 4 4 C 1.53007 * 109.46874 * 240.00473 * 2 1 3 5 5 N 1.46501 * 109.46920 * 184.99622 * 4 2 1 6 6 C 1.34773 * 119.99984 * 179.97438 * 5 4 2 7 7 O 1.21690 * 120.00101 * 0.02562 * 6 5 4 8 8 C 1.46725 * 120.00277 * 180.02562 * 6 5 4 9 9 C 1.36339 * 126.64727 * 180.02562 * 8 6 5 10 10 N 1.33692 * 107.45298 * 179.97438 * 9 8 6 11 11 C 1.30610 * 108.99735 * 0.02562 * 10 9 8 12 12 O 1.33670 * 109.15268 * 359.75201 * 11 10 9 13 13 N 1.46897 * 109.47322 * 120.00525 * 2 1 3 14 14 C 1.46896 * 110.99944 * 274.99710 * 13 2 1 15 15 C 1.50695 * 109.47269 * 179.97438 * 14 13 2 16 16 C 1.38298 * 119.93076 * 269.72784 * 15 14 13 17 17 C 1.38103 * 120.06761 * 179.72701 * 16 15 14 18 18 C 1.38879 * 119.92906 * 0.56538 * 17 16 15 19 19 O 1.35755 * 120.07140 * 179.68291 * 18 17 16 20 20 C 1.34824 * 117.00490 * 174.48811 * 19 18 17 21 21 H 1.08007 * 120.00005 * 5.06103 * 20 19 18 22 22 C 1.38652 * 120.00684 * 185.05840 * 20 19 18 23 23 N 1.31560 * 119.99262 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00487 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46850 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46744 * 120.00285 * 24 22 20 27 27 H 1.48499 * 109.47047 * 239.99831 * 24 22 20 28 28 C 1.38880 * 119.86503 * 359.70846 * 18 17 16 29 29 C 1.38095 * 119.92898 * 359.97438 * 28 18 17 30 30 H 1.09003 * 109.47163 * 299.99686 * 1 2 3 31 31 H 1.09001 * 109.47029 * 59.99552 * 1 2 3 32 32 H 1.08998 * 109.46961 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47232 * 65.00149 * 4 2 1 34 34 H 1.08997 * 109.47169 * 304.99862 * 4 2 1 35 35 H 0.97004 * 119.99991 * 0.27410 * 5 4 2 36 36 H 1.08000 * 126.27226 * 0.02562 * 9 8 6 37 37 H 1.08003 * 125.42716 * 180.02562 * 11 10 9 38 38 H 1.00902 * 110.99561 * 151.04658 * 13 2 1 39 39 H 1.09007 * 109.47210 * 300.00486 * 14 13 2 40 40 H 1.09002 * 109.47204 * 59.99673 * 14 13 2 41 41 H 1.07994 * 119.97096 * 359.97438 * 16 15 14 42 42 H 1.07997 * 120.03842 * 180.27904 * 17 16 15 43 43 H 0.97001 * 119.99465 * 179.97438 * 23 22 20 44 44 H 1.08000 * 120.03615 * 179.97438 * 28 18 17 45 45 H 1.07994 * 119.96731 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5000 -0.8262 -1.1908 6 6 4.1729 -1.4289 -2.1909 7 8 3.5678 -1.8855 -3.1429 8 6 5.6352 -1.5347 -2.1320 9 6 6.4475 -2.1123 -3.0623 10 7 7.7053 -1.9943 -2.6249 11 6 7.6993 -1.3745 -1.4752 12 8 6.4393 -1.0733 -1.1460 13 7 2.0197 -0.6926 1.1993 14 6 2.0826 0.2224 2.3468 15 6 2.5875 -0.5220 3.5559 16 6 1.6924 -1.1472 4.4048 17 6 2.1524 -1.8350 5.5105 18 6 3.5145 -1.8885 5.7760 19 8 3.9693 -2.5583 6.8656 20 6 5.3061 -2.6685 7.0027 21 1 5.9633 -2.1648 6.3092 22 6 5.8372 -3.4282 8.0338 23 7 5.0366 -4.0420 8.8782 24 14 7.6892 -3.5801 8.2240 25 1 8.3622 -2.7998 7.1548 26 1 8.0953 -3.0527 9.5515 27 1 8.0822 -5.0082 8.1175 28 6 4.4104 -1.2549 4.9247 29 6 3.9447 -0.5743 3.8171 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7516 -0.1582 -2.1370 34 1 1.6054 -1.7197 -1.2953 35 1 3.9821 -0.4659 -0.4300 36 1 6.1326 -2.5788 -3.9840 37 1 8.5736 -1.1387 -0.8866 38 1 2.9174 -1.1205 1.0285 39 1 2.7589 1.0461 2.1181 40 1 1.0872 0.6162 2.5525 41 1 0.6329 -1.1010 4.2006 42 1 1.4533 -2.3268 6.1706 43 1 5.4081 -4.5738 9.5994 44 1 5.4702 -1.2944 5.1288 45 1 4.6408 -0.0810 3.1550 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001441941976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:30:11 Heat of formation + Delta-G solvation = -7.479201 kcal Electronic energy + Delta-G solvation = -28826.311251 eV Core-core repulsion = 24618.618533 eV Total energy + Delta-G solvation = -4207.692718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -43.82233 -40.09276 -39.14751 -37.86185 -36.51479 -35.40395 -34.28336 -32.47620 -31.76350 -30.82450 -30.21218 -28.71339 -27.03968 -25.60466 -24.33382 -23.82470 -23.05153 -22.00875 -21.16674 -20.95000 -20.49694 -19.00546 -18.03384 -17.38455 -17.24568 -17.02974 -16.59596 -16.23759 -15.61827 -15.02433 -14.83305 -14.71301 -14.60682 -14.46255 -14.19898 -13.84976 -13.70899 -13.58347 -13.17221 -12.92210 -12.75796 -12.60425 -12.48375 -12.07234 -12.02851 -11.92854 -11.67574 -11.32951 -11.32133 -11.16516 -10.82809 -10.70751 -10.67225 -10.61063 -10.45877 -9.74482 -9.41878 -9.38231 -8.88903 -8.55311 -8.22474 -7.24091 -6.49629 -4.08591 0.40677 2.01199 2.03883 2.17236 2.21694 2.67628 2.71906 3.08270 3.09698 3.15351 3.74183 3.91931 3.98748 4.29559 4.42267 4.51337 4.58695 4.81472 4.95092 5.05400 5.08061 5.14705 5.23746 5.24867 5.26556 5.32535 5.45890 5.52800 5.63186 5.68781 5.74564 5.78012 5.81639 5.85607 6.06645 6.16483 6.37300 6.65325 6.79924 6.82752 6.90691 7.00034 7.13495 7.19225 7.23328 7.34960 7.39707 7.55506 7.77802 7.95272 8.95992 9.66041 10.68410 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008497 B = 0.002725 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.344051 B =10272.163569 C =13110.708933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.070 3.930 3 H 0.050 0.950 4 C 0.116 3.884 5 N -0.719 5.719 6 C 0.612 3.388 7 O -0.514 6.514 8 C -0.114 4.114 9 C 0.055 3.945 10 N -0.496 5.496 11 C 0.207 3.793 12 O -0.190 6.190 13 N -0.680 5.680 14 C 0.118 3.882 15 C -0.188 4.188 16 C -0.050 4.050 17 C -0.194 4.194 18 C 0.157 3.843 19 O -0.177 6.177 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.861 5.861 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.275 1.275 28 C -0.235 4.235 29 C -0.066 4.066 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.404 0.596 36 H 0.198 0.802 37 H 0.258 0.742 38 H 0.339 0.661 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 9.682 -20.066 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 H 0.067 0.933 4 C -0.007 4.007 5 N -0.371 5.371 6 C 0.397 3.603 7 O -0.391 6.391 8 C -0.169 4.169 9 C -0.087 4.087 10 N -0.224 5.224 11 C -0.017 4.017 12 O -0.076 6.076 13 N -0.315 5.315 14 C -0.010 4.010 15 C -0.189 4.189 16 C -0.069 4.069 17 C -0.214 4.214 18 C 0.103 3.897 19 O -0.080 6.080 20 C -0.468 4.468 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.254 4.254 29 C -0.085 4.085 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.240 0.760 36 H 0.214 0.786 37 H 0.274 0.726 38 H 0.159 0.841 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.660 8.687 -20.414 22.247 hybrid contribution 1.629 0.824 0.707 1.958 sum -0.031 9.511 -19.707 21.882 Atomic orbital electron populations 1.21726 0.93100 1.03052 1.01695 1.21811 0.97263 0.95986 0.88935 0.93256 1.21754 0.78088 1.02579 0.98308 1.45942 1.08716 1.59210 1.23220 1.16281 0.82590 0.78436 0.82977 1.90914 1.66814 1.48181 1.33168 1.23151 0.92753 1.09179 0.91858 1.23638 0.86788 0.98058 1.00264 1.70487 1.23025 1.18030 1.10845 1.28524 0.85766 0.94193 0.93254 1.84520 1.18768 1.61452 1.42846 1.60649 1.33794 1.33512 1.03497 1.20695 1.00034 0.92003 0.88247 1.19077 0.93302 1.07813 0.98738 1.20459 0.98183 0.95169 0.93098 1.20240 0.93167 1.07135 1.00825 1.19410 0.92776 0.90699 0.86855 1.83981 1.25208 1.63458 1.35379 1.21365 0.78841 1.31892 1.14739 0.89046 1.25300 1.00475 0.95508 0.95249 1.70049 1.35139 1.29387 1.15022 0.85649 0.80564 0.78539 0.78677 1.19131 1.20115 1.20089 1.21105 1.00299 1.05620 0.98367 1.20561 0.94189 0.97520 0.96223 0.91912 0.92409 0.91425 0.90276 0.89757 0.76016 0.78554 0.72601 0.84061 0.95392 0.90816 0.87033 0.86543 0.92017 0.85657 0.88065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.41 37.16 0.35 -0.70 16 2 C 0.07 0.58 2.81 -67.71 -0.19 0.39 16 3 H 0.05 0.38 7.80 -51.93 -0.40 -0.02 16 4 C 0.12 0.98 5.31 -4.04 -0.02 0.95 16 5 N -0.72 -6.42 4.99 -61.60 -0.31 -6.73 16 6 C 0.61 6.63 7.79 -12.83 -0.10 6.53 16 7 O -0.51 -6.86 16.89 5.20 0.09 -6.77 16 8 C -0.11 -1.14 7.18 -36.84 -0.26 -1.41 16 9 C 0.06 0.54 11.66 -17.43 -0.20 0.34 16 10 N -0.50 -4.84 11.26 -14.67 -0.17 -5.01 16 11 C 0.21 1.50 13.21 52.24 0.69 2.19 16 12 O -0.19 -1.68 10.57 4.41 0.05 -1.63 16 13 N -0.68 -7.30 6.29 -107.99 -0.68 -7.98 16 14 C 0.12 1.39 5.61 -4.98 -0.03 1.36 16 15 C -0.19 -2.95 5.40 -104.58 -0.56 -3.51 16 16 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 17 C -0.19 -4.01 9.99 -39.39 -0.39 -4.41 16 18 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 19 O -0.18 -4.98 9.76 0.05 0.00 -4.98 16 20 C -0.39 -10.76 9.49 30.89 0.29 -10.47 16 21 H 0.09 2.31 5.20 -52.48 -0.27 2.04 16 22 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 23 N -0.86 -24.98 13.67 55.48 0.76 -24.22 16 24 Si 0.94 20.13 29.55 -169.99 -5.02 15.10 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 28 C -0.23 -4.87 9.17 -39.40 -0.36 -5.24 16 29 C -0.07 -1.12 9.69 -39.61 -0.38 -1.50 16 30 H 0.06 0.50 7.45 -51.93 -0.39 0.11 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.40 3.22 7.16 -40.82 -0.29 2.93 16 36 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.26 0.59 8.06 -52.48 -0.42 0.17 16 38 H 0.34 3.75 6.70 -39.29 -0.26 3.49 16 39 H 0.03 0.30 8.00 -51.92 -0.42 -0.11 16 40 H 0.07 0.83 7.38 -51.93 -0.38 0.44 16 41 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 44 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 45 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -33.34 389.34 -6.99 -40.32 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.66 Total: 8.35 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.92 Total: -12.32 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -0.39 Total: -43.94 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.13 Total: -13.38 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.34 -6.99 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001441941976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.844 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds