Wall clock time and date at job start Sat Apr 11 2020 07:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46666 * 2 1 4 4 C 1.53000 * 109.47151 * 119.99381 * 2 1 3 5 5 N 1.46500 * 109.47246 * 175.00314 * 4 2 1 6 6 C 1.34773 * 120.00153 * 180.02562 * 5 4 2 7 7 O 1.21683 * 119.99967 * 359.97438 * 6 5 4 8 8 C 1.46721 * 119.99967 * 180.02562 * 6 5 4 9 9 C 1.36342 * 126.64208 * 179.97438 * 8 6 5 10 10 N 1.33694 * 107.45470 * 179.97438 * 9 8 6 11 11 C 1.30621 * 108.98995 * 0.02562 * 10 9 8 12 12 O 1.33667 * 109.15644 * 359.74872 * 11 10 9 13 13 N 1.46896 * 109.47549 * 239.99817 * 2 1 3 14 14 C 1.46905 * 111.00155 * 84.99606 * 13 2 1 15 15 C 1.50698 * 109.47044 * 180.02562 * 14 13 2 16 16 C 1.38297 * 119.93202 * 90.00061 * 15 14 13 17 17 C 1.38101 * 120.07230 * 180.02562 * 16 15 14 18 18 C 1.38886 * 119.92536 * 359.97438 * 17 16 15 19 19 O 1.35750 * 120.06440 * 180.02562 * 18 17 16 20 20 C 1.34828 * 117.00075 * 5.53777 * 19 18 17 21 21 H 1.07993 * 120.00518 * 354.94289 * 20 19 18 22 22 C 1.38663 * 119.99751 * 174.94575 * 20 19 18 23 23 N 1.31556 * 120.00220 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99821 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47264 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47375 * 119.99795 * 24 22 20 27 27 H 1.48506 * 109.47301 * 239.99793 * 24 22 20 28 28 C 1.38874 * 119.86623 * 0.27854 * 18 17 16 29 29 C 1.38110 * 119.92772 * 359.48927 * 28 18 17 30 30 H 1.09001 * 109.46939 * 60.00604 * 1 2 3 31 31 H 1.09007 * 109.46524 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47446 * 300.00355 * 1 2 3 33 33 H 1.08999 * 109.47047 * 295.00551 * 4 2 1 34 34 H 1.09005 * 109.47164 * 55.00463 * 4 2 1 35 35 H 0.96999 * 119.99548 * 0.02562 * 5 4 2 36 36 H 1.07999 * 126.27699 * 359.97438 * 9 8 6 37 37 H 1.08001 * 125.41693 * 180.02562 * 11 10 9 38 38 H 1.00902 * 110.99547 * 321.04193 * 13 2 1 39 39 H 1.09003 * 109.46647 * 59.99968 * 14 13 2 40 40 H 1.09004 * 109.46926 * 300.00194 * 14 13 2 41 41 H 1.07999 * 119.96698 * 0.02562 * 16 15 14 42 42 H 1.07992 * 120.03608 * 179.97438 * 17 16 15 43 43 H 0.96996 * 120.00178 * 179.97438 * 23 22 20 44 44 H 1.07996 * 120.03745 * 179.72497 * 28 18 17 45 45 H 1.07996 * 119.96227 * 180.23396 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5001 -0.8262 1.1907 6 6 4.1730 -1.4289 2.1909 7 8 3.5679 -1.8853 3.1428 8 6 5.6353 -1.5336 2.1324 9 6 6.4476 -2.1110 3.0628 10 7 7.7055 -1.9930 2.6255 11 6 7.6995 -1.3724 1.4762 12 8 6.4386 -1.0803 1.1420 13 7 2.0198 -0.6925 -1.1993 14 6 2.0825 0.2225 -2.3469 15 6 2.5875 -0.5219 -3.5559 16 6 1.6929 -1.1520 -4.4017 17 6 2.1525 -1.8355 -5.5102 18 6 3.5148 -1.8892 -5.7754 19 8 3.9696 -2.5599 -6.8646 20 6 3.0430 -3.0539 -7.7103 21 1 1.9939 -2.9797 -7.4652 22 6 3.4372 -3.6574 -8.8948 23 7 4.7152 -3.7475 -9.1937 24 14 2.1535 -4.3412 -10.0669 25 1 0.7983 -4.1153 -9.5033 26 1 2.2653 -3.6547 -11.3788 27 1 2.3763 -5.7980 -10.2500 28 6 4.4110 -1.2600 -4.9214 29 6 3.9446 -0.5740 -3.8171 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.7516 -0.1581 2.1370 34 1 1.6054 -1.7197 1.2953 35 1 3.9824 -0.4620 0.4320 36 1 6.1327 -2.5781 3.9842 37 1 8.5737 -1.1371 0.8873 38 1 1.4497 -1.4980 -1.4099 39 1 2.7589 1.0462 -2.1182 40 1 1.0871 0.6162 -2.5526 41 1 0.6337 -1.1095 -4.1952 42 1 1.4535 -2.3276 -6.1700 43 1 4.9910 -4.1700 -10.0221 44 1 5.4711 -1.3037 -5.1225 45 1 4.6408 -0.0813 -3.1546 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001441941992.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:30:15 Heat of formation + Delta-G solvation = -12.160556 kcal Electronic energy + Delta-G solvation = -28667.496874 eV Core-core repulsion = 24459.601157 eV Total energy + Delta-G solvation = -4207.895717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.70369 -39.84906 -39.14964 -37.82763 -36.47540 -35.30531 -34.26936 -32.46169 -31.67499 -30.71788 -30.21845 -28.56820 -26.94923 -25.59892 -24.24272 -23.76607 -22.94035 -22.03248 -21.31322 -20.89128 -20.48830 -18.74447 -18.03167 -17.19438 -17.11538 -17.03161 -16.51411 -16.03336 -15.33828 -15.05881 -14.75441 -14.61843 -14.57960 -14.37906 -14.06464 -13.76609 -13.71819 -13.59827 -13.26143 -13.03585 -12.79319 -12.74848 -12.51326 -12.07488 -11.98039 -11.82066 -11.61774 -11.37728 -11.25765 -11.21198 -10.83725 -10.67114 -10.61938 -10.55935 -10.45639 -9.56816 -9.38465 -9.22322 -8.89074 -8.55543 -8.22691 -7.24115 -6.49828 -4.08684 0.53918 2.13757 2.16514 2.17206 2.21621 2.83700 2.94635 3.08595 3.10243 3.15765 3.84501 3.92421 4.01802 4.48758 4.52126 4.60800 4.62635 4.74053 4.93244 5.05107 5.19617 5.20891 5.22521 5.23623 5.25766 5.32175 5.41478 5.49720 5.59383 5.69169 5.74800 5.80019 5.82800 5.85627 6.08508 6.16065 6.36975 6.64717 6.81939 6.89365 7.00376 7.07362 7.20432 7.23589 7.30734 7.35716 7.39852 7.77572 7.79115 7.95222 8.95937 9.65752 10.68196 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.002244 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.953327 B =12476.060737 C =14230.362693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.067 3.933 3 H 0.085 0.915 4 C 0.131 3.869 5 N -0.698 5.698 6 C 0.606 3.394 7 O -0.525 6.525 8 C -0.107 4.107 9 C 0.049 3.951 10 N -0.497 5.497 11 C 0.203 3.797 12 O -0.187 6.187 13 N -0.682 5.682 14 C 0.119 3.881 15 C -0.187 4.187 16 C -0.065 4.065 17 C -0.235 4.235 18 C 0.157 3.843 19 O -0.177 6.177 20 C -0.392 4.392 21 H 0.092 0.908 22 C 0.039 3.961 23 N -0.862 5.862 24 Si 0.941 3.059 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.195 4.195 29 C -0.052 4.052 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.414 0.586 36 H 0.196 0.804 37 H 0.257 0.743 38 H 0.347 0.653 39 H 0.070 0.930 40 H 0.030 0.970 41 H 0.102 0.898 42 H 0.126 0.874 43 H 0.270 0.730 44 H 0.116 0.884 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 8.979 19.671 21.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.007 3.993 5 N -0.348 5.348 6 C 0.390 3.610 7 O -0.404 6.404 8 C -0.162 4.162 9 C -0.094 4.094 10 N -0.225 5.225 11 C -0.022 4.022 12 O -0.072 6.072 13 N -0.313 5.313 14 C -0.009 4.009 15 C -0.189 4.189 16 C -0.083 4.083 17 C -0.254 4.254 18 C 0.102 3.898 19 O -0.080 6.080 20 C -0.468 4.468 21 H 0.110 0.890 22 C -0.165 4.165 23 N -0.496 5.496 24 Si 0.766 3.234 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.214 4.214 29 C -0.070 4.070 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.251 0.749 36 H 0.213 0.787 37 H 0.273 0.727 38 H 0.166 0.834 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.120 0.880 42 H 0.143 0.857 43 H 0.080 0.920 44 H 0.134 0.866 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.635 8.424 20.438 22.166 hybrid contribution -1.860 0.043 -1.664 2.496 sum -3.495 8.467 18.774 20.889 Atomic orbital electron populations 1.22413 0.95968 1.02804 1.02733 1.21833 0.93564 0.98338 0.90644 0.89730 1.21464 0.79098 1.01430 0.97283 1.45703 1.08249 1.57995 1.22887 1.16345 0.82575 0.78838 0.83211 1.90891 1.66832 1.48993 1.33655 1.23216 0.92918 1.08779 0.91335 1.23603 0.86853 0.98522 1.00438 1.70472 1.23096 1.17909 1.11023 1.28479 0.85846 0.94607 0.93280 1.84538 1.18603 1.61772 1.42307 1.60680 1.57259 1.09930 1.03462 1.20652 0.98631 0.93770 0.87866 1.19072 0.93669 1.07650 0.98482 1.20578 0.97719 0.96016 0.94024 1.21123 0.95733 1.07500 1.01057 1.19413 0.91963 0.89996 0.88384 1.83978 1.35383 1.59920 1.28761 1.21371 0.88555 1.37518 0.99372 0.89030 1.25298 0.97295 0.97033 0.96896 1.70043 1.14500 1.40836 1.24255 0.85647 0.79488 0.78696 0.79594 1.19127 1.20106 1.20104 1.20220 0.98864 1.04760 0.97567 1.20435 0.94294 0.97062 0.95256 0.91883 0.91911 0.91778 0.90897 0.91029 0.74908 0.78717 0.72732 0.83398 0.91161 0.95175 0.87989 0.85676 0.92016 0.86614 0.87150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 9.16 37.16 0.34 -0.84 16 2 C 0.07 0.50 2.75 -67.71 -0.19 0.32 16 3 H 0.08 0.60 7.80 -51.93 -0.40 0.19 16 4 C 0.13 1.11 5.37 -4.04 -0.02 1.09 16 5 N -0.70 -6.74 5.38 -61.61 -0.33 -7.07 16 6 C 0.61 6.98 7.79 -12.84 -0.10 6.88 16 7 O -0.53 -7.35 16.89 5.20 0.09 -7.26 16 8 C -0.11 -1.14 7.18 -36.84 -0.26 -1.41 16 9 C 0.05 0.51 11.66 -17.42 -0.20 0.30 16 10 N -0.50 -5.07 11.26 -14.67 -0.17 -5.24 16 11 C 0.20 1.56 13.21 52.25 0.69 2.25 16 12 O -0.19 -1.77 10.57 4.43 0.05 -1.72 16 13 N -0.68 -6.65 5.68 -107.99 -0.61 -7.27 16 14 C 0.12 1.31 5.61 -4.97 -0.03 1.29 16 15 C -0.19 -2.85 5.40 -104.58 -0.56 -3.42 16 16 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 17 C -0.23 -4.89 9.17 -39.39 -0.36 -5.25 16 18 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 19 O -0.18 -4.97 9.76 0.05 0.00 -4.97 16 20 C -0.39 -10.77 9.49 30.89 0.29 -10.48 16 21 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 22 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 23 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16 24 Si 0.94 20.22 29.55 -169.99 -5.02 15.20 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 28 C -0.19 -3.94 9.99 -39.39 -0.39 -4.34 16 29 C -0.05 -0.85 9.69 -39.60 -0.38 -1.24 16 30 H 0.06 0.44 7.45 -51.93 -0.39 0.05 16 31 H 0.06 0.42 8.13 -51.92 -0.42 0.00 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.41 3.84 7.93 -40.82 -0.32 3.52 16 36 H 0.20 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.26 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.35 3.63 8.46 -39.29 -0.33 3.30 16 39 H 0.07 0.72 8.00 -51.93 -0.42 0.31 16 40 H 0.03 0.32 7.38 -51.93 -0.38 -0.07 16 41 H 0.10 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.13 2.65 5.64 -52.49 -0.30 2.35 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 45 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 391.40 15.07 5.90 5.90 Total: -1.00 -33.08 391.40 -7.02 -40.10 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.76 Total: 8.49 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: -1.92 Total: -11.95 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.35 Total: -43.79 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.14 Total: -13.96 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.08 -7.02 -40.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001441941992.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.942 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds