Wall clock time and date at job start Sat Apr 11 2020 07:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00298 * 2 1 4 4 H 1.48503 * 109.47034 * 270.00174 * 3 2 1 5 5 H 1.48494 * 109.46841 * 30.00071 * 3 2 1 6 6 H 1.48503 * 109.46947 * 150.00420 * 3 2 1 7 7 C 1.38817 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99936 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99912 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99842 * 180.27305 * 9 7 2 11 11 C 1.53000 * 109.46882 * 179.72486 * 10 9 7 12 12 H 1.09003 * 109.47493 * 60.00786 * 11 10 9 13 13 C 1.54812 * 109.46806 * 180.02562 * 11 10 9 14 14 N 1.45120 * 109.53602 * 187.87999 * 13 11 10 15 15 C 1.34782 * 118.75916 * 90.74358 * 14 13 11 16 16 O 1.21549 * 120.00037 * 174.26857 * 15 14 13 17 17 C 1.47879 * 119.99603 * 354.26250 * 15 14 13 18 18 C 1.39908 * 125.68893 * 173.77961 * 17 15 14 19 19 C 1.38583 * 107.58805 * 179.89303 * 18 17 15 20 20 N 1.34112 * 132.34273 * 180.09634 * 19 18 17 21 21 C 1.31131 * 120.84312 * 180.29590 * 20 19 18 22 22 C 1.40340 * 120.30037 * 359.97438 * 21 20 19 23 23 C 1.35455 * 119.46221 * 0.02706 * 22 21 20 24 24 N 1.36676 * 119.13938 * 359.97438 * 23 22 21 25 25 N 1.32367 * 125.69550 * 354.08869 * 17 15 14 26 26 C 1.47514 * 122.48382 * 270.70949 * 14 13 11 27 27 C 1.53565 * 111.02705 * 41.64009 * 26 14 13 28 28 C 1.51537 * 109.58191 * 39.97476 * 27 26 14 29 29 O 1.38015 * 109.47233 * 300.00879 * 11 10 9 30 30 H 0.97003 * 119.99369 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00248 * 0.02562 * 9 7 2 32 32 H 1.08992 * 109.47372 * 299.72333 * 10 9 7 33 33 H 1.08991 * 109.47024 * 59.72926 * 10 9 7 34 34 H 1.09001 * 109.45925 * 307.89699 * 13 11 10 35 35 H 1.08994 * 109.45654 * 67.87205 * 13 11 10 36 36 H 1.07995 * 126.20283 * 0.04479 * 18 17 15 37 37 H 1.08007 * 119.85096 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.27098 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.43108 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.15915 * 162.03311 * 26 14 13 41 41 H 1.08993 * 109.17332 * 281.23682 * 26 14 13 42 42 H 1.09007 * 109.45497 * 160.00544 * 27 26 14 43 43 H 1.08995 * 109.45423 * 279.94352 * 27 26 14 44 44 H 1.08997 * 109.59165 * 28.37938 * 28 27 26 45 45 H 1.09001 * 109.59040 * 148.82216 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0077 11 6 5.6162 -2.1915 -0.0138 12 1 5.8837 -1.6223 0.8765 13 6 6.3902 -3.5322 -0.0214 14 7 7.8070 -3.2757 0.1603 15 6 8.3080 -3.2607 1.4114 16 8 9.5061 -3.1523 1.5850 17 6 7.4000 -3.3760 2.5729 18 6 7.7956 -3.4968 3.9094 19 6 6.6469 -3.5754 4.6807 20 7 6.4527 -3.6969 6.0021 21 6 5.2414 -3.7570 6.5008 22 6 4.1234 -3.6942 5.6548 23 6 4.3054 -3.5715 4.3182 24 7 5.5777 -3.5109 3.8226 25 7 6.0774 -3.3879 2.5210 26 6 8.7196 -3.0316 -0.9726 27 6 8.0660 -2.1179 -2.0197 28 6 7.2838 -1.0238 -1.3215 29 8 5.9445 -1.4646 -1.1402 30 1 -0.4849 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0007 32 1 3.8528 -3.0449 0.8819 33 1 3.8447 -3.0402 -0.8979 34 1 6.0288 -4.1647 0.7893 35 1 6.2321 -4.0373 -0.9742 36 1 8.8118 -3.5216 4.2741 37 1 5.1035 -3.8545 7.5676 38 1 3.1260 -3.7434 6.0662 39 1 3.4562 -3.5222 3.6527 40 1 9.6297 -2.5589 -0.6034 41 1 8.9752 -3.9834 -1.4380 42 1 8.8393 -1.6696 -2.6437 43 1 7.3917 -2.7047 -2.6433 44 1 7.7344 -0.8145 -0.3514 45 1 7.2921 -0.1215 -1.9330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201695157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:30:07 Heat of formation + Delta-G solvation = 87.675557 kcal Electronic energy + Delta-G solvation = -31377.599288 eV Core-core repulsion = 27206.325541 eV Total energy + Delta-G solvation = -4171.273747 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.55598 -40.64074 -38.76862 -37.95453 -35.54672 -34.93032 -34.24275 -33.22268 -31.48565 -31.05411 -29.39824 -29.05567 -27.05871 -25.86407 -24.88889 -24.05531 -22.84299 -22.20092 -21.16422 -21.01472 -19.46049 -18.30035 -18.21338 -17.69508 -16.89969 -16.66660 -16.63009 -16.22550 -15.80554 -15.68536 -14.87910 -14.74852 -14.63769 -14.33998 -14.01648 -13.72895 -13.61094 -13.39086 -13.22436 -12.84021 -12.81552 -12.62486 -12.42458 -12.25983 -12.06793 -11.51210 -11.41632 -11.29284 -11.11064 -10.86788 -10.83870 -10.52288 -10.27260 -10.10204 -10.07612 -9.71826 -9.59394 -9.49851 -8.89273 -8.70239 -8.16848 -7.20103 -5.77053 -3.10635 0.25856 0.50598 1.60684 1.70966 2.66672 3.02574 3.22200 3.39230 3.44733 3.46602 3.59591 3.73924 3.86313 4.22877 4.37848 4.61049 4.64362 4.67838 4.76510 4.96471 4.99936 5.08518 5.09681 5.15238 5.29706 5.32566 5.40988 5.48617 5.52534 5.56208 5.60175 5.72751 5.75507 5.82000 5.93612 5.97706 6.03280 6.05678 6.17416 6.34084 6.56292 6.67453 6.93521 7.12885 7.33718 7.82114 7.88776 7.99475 8.42485 9.22825 9.96020 10.17497 11.41372 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007810 B = 0.005154 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.086299 B = 5431.484594 C = 8300.283949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.293 1.293 6 H -0.279 1.279 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.177 3.823 11 C 0.092 3.908 12 H 0.051 0.949 13 C 0.068 3.932 14 N -0.594 5.594 15 C 0.595 3.405 16 O -0.523 6.523 17 C 0.064 3.936 18 C -0.205 4.205 19 C 0.252 3.748 20 N -0.464 5.464 21 C 0.183 3.817 22 C -0.223 4.223 23 C 0.171 3.829 24 N -0.302 5.302 25 N -0.259 5.259 26 C 0.112 3.888 27 C -0.165 4.165 28 C 0.071 3.929 29 O -0.374 6.374 30 H 0.259 0.741 31 H 0.364 0.636 32 H 0.042 0.958 33 H 0.032 0.968 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.170 0.830 37 H 0.181 0.819 38 H 0.171 0.829 39 H 0.189 0.811 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.677 -9.941 7.618 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.206 1.206 7 C -0.370 4.370 8 H 0.107 0.893 9 N -0.395 5.395 10 C 0.050 3.950 11 C 0.032 3.968 12 H 0.069 0.931 13 C -0.056 4.056 14 N -0.326 5.326 15 C 0.380 3.620 16 O -0.397 6.397 17 C -0.094 4.094 18 C -0.237 4.237 19 C 0.025 3.975 20 N -0.175 5.175 21 C -0.003 4.003 22 C -0.247 4.247 23 C 0.038 3.962 24 N -0.075 5.075 25 N -0.089 5.089 26 C -0.009 4.009 27 C -0.203 4.203 28 C -0.006 4.006 29 O -0.292 6.292 30 H 0.069 0.931 31 H 0.197 0.803 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.128 0.872 35 H 0.106 0.894 36 H 0.187 0.813 37 H 0.198 0.802 38 H 0.189 0.811 39 H 0.206 0.794 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.102 0.898 44 H 0.065 0.935 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.946 -9.891 7.022 19.249 hybrid contribution 0.500 1.189 0.240 1.312 sum 15.446 -8.702 7.262 19.159 Atomic orbital electron populations 1.69701 1.05046 1.25751 1.57890 1.24618 0.95166 0.97090 1.02152 0.86552 0.79057 0.85014 0.77934 1.20962 1.21914 1.20581 1.19033 0.80582 0.94624 1.42719 0.89259 1.42573 1.03829 1.02173 1.90943 1.20510 0.85606 0.89911 0.99013 1.22265 0.96360 0.90280 0.87944 0.93140 1.22919 0.78569 0.99802 1.04299 1.47815 1.10004 1.69189 1.05549 1.17110 0.86333 0.77044 0.81512 1.90791 1.14099 1.49792 1.85045 1.21978 0.91497 1.00956 0.95008 1.20845 0.97886 1.15679 0.89253 1.20559 0.88526 1.01651 0.86763 1.68248 1.25089 1.15707 1.08449 1.23460 0.86622 0.88778 1.01399 1.21923 1.02831 1.08087 0.91850 1.22354 0.85694 0.92235 0.95965 1.47371 1.06480 1.45905 1.07717 1.78570 1.09233 1.27988 0.93121 1.21904 0.92781 1.00026 0.86210 1.22497 1.00975 0.98484 0.98372 1.22154 0.82808 0.96116 0.99473 1.86409 1.27278 1.71822 1.43674 0.93135 0.80336 0.94023 0.95018 0.87214 0.89421 0.81302 0.80180 0.81121 0.79399 0.88987 0.91149 0.89451 0.89829 0.93495 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.11 13.97 55.49 0.78 -28.33 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.64 27.74 -169.99 -4.71 17.92 16 4 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -6.90 6.52 56.52 0.37 -6.53 16 7 C -0.24 -6.72 10.47 -15.06 -0.16 -6.87 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.75 -18.11 5.29 -59.91 -0.32 -18.43 16 10 C 0.18 3.44 5.95 -4.04 -0.02 3.41 16 11 C 0.09 1.52 2.02 -25.78 -0.05 1.47 16 12 H 0.05 0.93 7.27 -51.93 -0.38 0.55 16 13 C 0.07 0.93 4.41 -3.83 -0.02 0.91 16 14 N -0.59 -7.83 2.19 -173.57 -0.38 -8.21 16 15 C 0.60 8.86 7.63 -12.31 -0.09 8.77 16 16 O -0.52 -8.65 16.23 5.32 0.09 -8.56 16 17 C 0.06 0.95 6.63 -83.07 -0.55 0.40 16 18 C -0.21 -2.91 10.66 -38.83 -0.41 -3.32 16 19 C 0.25 3.42 7.90 -155.42 -1.23 2.20 16 20 N -0.46 -5.45 10.48 -12.22 -0.13 -5.57 16 21 C 0.18 1.42 11.27 -17.06 -0.19 1.23 16 22 C -0.22 -1.61 10.05 -39.78 -0.40 -2.01 16 23 C 0.17 1.76 11.30 -16.39 -0.19 1.58 16 24 N -0.30 -4.04 3.90 -12.20 -0.05 -4.09 16 25 N -0.26 -3.81 7.77 33.23 0.26 -3.55 16 26 C 0.11 1.22 6.12 -3.19 -0.02 1.20 16 27 C -0.17 -1.70 5.78 -27.18 -0.16 -1.85 16 28 C 0.07 0.95 6.38 36.42 0.23 1.18 16 29 O -0.37 -6.36 9.18 -26.54 -0.24 -6.60 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.36 8.98 5.39 -40.82 -0.22 8.76 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 1.50 5.29 -51.93 -0.27 1.23 16 35 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 36 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.18 0.65 8.06 -52.48 -0.42 0.23 16 38 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.09 1.03 7.07 -51.93 -0.37 0.66 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 44 H 0.05 0.66 7.40 -51.93 -0.38 0.27 16 45 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -36.23 367.42 -8.39 -44.61 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.86 Total: 6.94 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -3.36 Total: 8.34 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: 0.16 Total: -68.19 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.16 Total: -15.16 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.71 Total: 17.92 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.23 -8.39 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201695157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.288 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds