Wall clock time and date at job start Sat Apr 11 2020 07:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 120.00298 * 2 1 4 4 H 1.48503 * 109.47034 * 270.00174 * 3 2 1 5 5 H 1.48494 * 109.46841 * 30.00071 * 3 2 1 6 6 H 1.48503 * 109.46947 * 150.00420 * 3 2 1 7 7 C 1.38817 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99936 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99912 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99842 * 180.27305 * 9 7 2 11 11 C 1.53000 * 109.46882 * 179.72486 * 10 9 7 12 12 H 1.09003 * 109.47493 * 60.00786 * 11 10 9 13 13 C 1.54812 * 109.46806 * 180.02562 * 11 10 9 14 14 N 1.45120 * 109.53602 * 187.87999 * 13 11 10 15 15 C 1.34782 * 118.75916 * 90.74358 * 14 13 11 16 16 O 1.21549 * 120.00037 * 174.26857 * 15 14 13 17 17 C 1.47879 * 119.99603 * 354.26250 * 15 14 13 18 18 C 1.39908 * 125.68893 * 173.77961 * 17 15 14 19 19 C 1.38583 * 107.58805 * 179.89303 * 18 17 15 20 20 N 1.34112 * 132.34273 * 180.09634 * 19 18 17 21 21 C 1.31131 * 120.84312 * 180.29590 * 20 19 18 22 22 C 1.40340 * 120.30037 * 359.97438 * 21 20 19 23 23 C 1.35455 * 119.46221 * 0.02706 * 22 21 20 24 24 N 1.36676 * 119.13938 * 359.97438 * 23 22 21 25 25 N 1.32367 * 125.69550 * 354.08869 * 17 15 14 26 26 C 1.47514 * 122.48382 * 270.70949 * 14 13 11 27 27 C 1.53565 * 111.02705 * 41.64009 * 26 14 13 28 28 C 1.51537 * 109.58191 * 39.97476 * 27 26 14 29 29 O 1.38015 * 109.47233 * 300.00879 * 11 10 9 30 30 H 0.97003 * 119.99369 * 359.97438 * 1 2 3 31 31 H 0.96998 * 120.00248 * 0.02562 * 9 7 2 32 32 H 1.08992 * 109.47372 * 299.72333 * 10 9 7 33 33 H 1.08991 * 109.47024 * 59.72926 * 10 9 7 34 34 H 1.09001 * 109.45925 * 307.89699 * 13 11 10 35 35 H 1.08994 * 109.45654 * 67.87205 * 13 11 10 36 36 H 1.07995 * 126.20283 * 0.04479 * 18 17 15 37 37 H 1.08007 * 119.85096 * 180.02562 * 21 20 19 38 38 H 1.08000 * 120.27098 * 180.02562 * 22 21 20 39 39 H 1.08002 * 120.43108 * 179.97438 * 23 22 21 40 40 H 1.09000 * 109.15915 * 162.03311 * 26 14 13 41 41 H 1.08993 * 109.17332 * 281.23682 * 26 14 13 42 42 H 1.09007 * 109.45497 * 160.00544 * 27 26 14 43 43 H 1.08995 * 109.45423 * 279.94352 * 27 26 14 44 44 H 1.08997 * 109.59165 * 28.37938 * 28 27 26 45 45 H 1.09001 * 109.59040 * 148.82216 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0077 11 6 5.6162 -2.1915 -0.0138 12 1 5.8837 -1.6223 0.8765 13 6 6.3902 -3.5322 -0.0214 14 7 7.8070 -3.2757 0.1603 15 6 8.3080 -3.2607 1.4114 16 8 9.5061 -3.1523 1.5850 17 6 7.4000 -3.3760 2.5729 18 6 7.7956 -3.4968 3.9094 19 6 6.6469 -3.5754 4.6807 20 7 6.4527 -3.6969 6.0021 21 6 5.2414 -3.7570 6.5008 22 6 4.1234 -3.6942 5.6548 23 6 4.3054 -3.5715 4.3182 24 7 5.5777 -3.5109 3.8226 25 7 6.0774 -3.3879 2.5210 26 6 8.7196 -3.0316 -0.9726 27 6 8.0660 -2.1179 -2.0197 28 6 7.2838 -1.0238 -1.3215 29 8 5.9445 -1.4646 -1.1402 30 1 -0.4849 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0007 32 1 3.8528 -3.0449 0.8819 33 1 3.8447 -3.0402 -0.8979 34 1 6.0288 -4.1647 0.7893 35 1 6.2321 -4.0373 -0.9742 36 1 8.8118 -3.5216 4.2741 37 1 5.1035 -3.8545 7.5676 38 1 3.1260 -3.7434 6.0662 39 1 3.4562 -3.5222 3.6527 40 1 9.6297 -2.5589 -0.6034 41 1 8.9752 -3.9834 -1.4380 42 1 8.8393 -1.6696 -2.6437 43 1 7.3917 -2.7047 -2.6433 44 1 7.7344 -0.8145 -0.3514 45 1 7.2921 -0.1215 -1.9330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201695157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:30:06 Heat of formation + Delta-G solvation = 62.952785 kcal Electronic energy + Delta-G solvation = -31378.671348 eV Core-core repulsion = 27206.325541 eV Total energy + Delta-G solvation = -4172.345807 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.47539 -41.72784 -39.93846 -38.86930 -36.90364 -36.42892 -35.11014 -34.58326 -33.20730 -32.13158 -30.56636 -30.23789 -28.10047 -27.23236 -25.94751 -25.02466 -24.17126 -23.55958 -22.57834 -22.03035 -20.48201 -19.78111 -19.21233 -19.17040 -17.98575 -17.74431 -17.52879 -17.21417 -16.92564 -16.77492 -16.41552 -16.10915 -15.81542 -15.41838 -15.17333 -15.00565 -14.82030 -14.70427 -14.45218 -14.03408 -13.90785 -13.78225 -13.67963 -13.52779 -13.43926 -12.90585 -12.80331 -12.49314 -12.36263 -12.21720 -12.09227 -11.96905 -11.81784 -11.66362 -11.39479 -11.01643 -10.92341 -10.64098 -10.61936 -9.82840 -9.28131 -9.11488 -8.02265 -5.33197 -0.56058 -0.34268 0.61249 0.83061 1.35014 1.37798 1.43776 1.66076 1.98304 2.38736 2.47099 2.66553 2.72279 2.82491 3.30457 3.39401 3.55202 3.57498 3.77134 3.93033 3.97429 3.99580 4.06361 4.18144 4.23067 4.26451 4.32075 4.38355 4.44463 4.48983 4.60588 4.67245 4.73723 4.80899 4.90055 5.00864 5.04128 5.08199 5.15102 5.18289 5.28314 5.40788 5.75806 5.91576 6.10873 6.21695 6.53700 6.65804 6.75031 7.07890 7.84979 8.04461 9.19013 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.007810 B = 0.005154 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.086299 B = 5431.484594 C = 8300.283949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.055 4.055 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.267 1.267 7 C -0.224 4.224 8 H 0.067 0.933 9 N -0.753 5.753 10 C 0.176 3.824 11 C 0.107 3.893 12 H 0.031 0.969 13 C 0.081 3.919 14 N -0.589 5.589 15 C 0.593 3.407 16 O -0.547 6.547 17 C 0.050 3.950 18 C -0.230 4.230 19 C 0.248 3.752 20 N -0.491 5.491 21 C 0.195 3.805 22 C -0.191 4.191 23 C 0.134 3.866 24 N -0.307 5.307 25 N -0.281 5.281 26 C 0.108 3.892 27 C -0.153 4.153 28 C 0.065 3.935 29 O -0.398 6.398 30 H 0.257 0.743 31 H 0.362 0.638 32 H 0.051 0.949 33 H 0.032 0.968 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.168 0.832 37 H 0.230 0.770 38 H 0.216 0.784 39 H 0.192 0.808 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.084 0.916 44 H 0.035 0.965 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.286 -10.215 8.443 20.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.247 4.247 3 Si 0.775 3.225 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.355 4.355 8 H 0.084 0.916 9 N -0.398 5.398 10 C 0.049 3.951 11 C 0.047 3.953 12 H 0.048 0.952 13 C -0.043 4.043 14 N -0.320 5.320 15 C 0.379 3.621 16 O -0.423 6.423 17 C -0.108 4.108 18 C -0.262 4.262 19 C 0.020 3.980 20 N -0.204 5.204 21 C 0.011 3.989 22 C -0.214 4.214 23 C 0.002 3.998 24 N -0.080 5.080 25 N -0.111 5.111 26 C -0.013 4.013 27 C -0.191 4.191 28 C -0.011 4.011 29 O -0.317 6.317 30 H 0.066 0.934 31 H 0.195 0.805 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.186 0.814 37 H 0.246 0.754 38 H 0.232 0.768 39 H 0.209 0.791 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.103 0.897 44 H 0.053 0.947 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 15.578 -10.192 7.833 20.197 hybrid contribution 0.195 1.185 0.146 1.210 sum 15.772 -9.007 7.980 19.839 Atomic orbital electron populations 1.69846 1.06662 1.26428 1.60081 1.25285 0.95903 1.00397 1.03085 0.85550 0.78188 0.80897 0.77910 1.20780 1.21975 1.19294 1.19045 0.82236 0.93655 1.40559 0.91551 1.42613 1.02599 1.03851 1.90756 1.20640 0.87309 0.87961 0.99150 1.21928 0.94629 0.91595 0.87180 0.95154 1.22722 0.78497 0.97992 1.05121 1.47877 1.09973 1.68414 1.05714 1.17223 0.86096 0.76752 0.82066 1.90761 1.14945 1.51168 1.85448 1.21986 0.91729 1.01838 0.95225 1.20926 0.98375 1.17412 0.89510 1.20700 0.88426 1.01245 0.87664 1.68358 1.27210 1.17552 1.07265 1.24410 0.85406 0.85416 1.03628 1.22524 1.04748 1.03818 0.90269 1.22861 0.84893 0.94435 0.97612 1.47508 1.07421 1.45801 1.07271 1.78433 1.09100 1.29300 0.94315 1.22126 0.92195 1.01320 0.85624 1.22426 1.01305 0.97344 0.97992 1.22391 0.81446 0.97789 0.99504 1.86344 1.29646 1.72243 1.43467 0.93371 0.80545 0.93156 0.95012 0.87310 0.87751 0.81406 0.75367 0.76770 0.79058 0.89329 0.89006 0.86372 0.89691 0.94664 0.87973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.77 13.97 21.65 0.30 -61.46 16 2 C -0.05 -3.22 5.50 84.86 0.47 -2.76 16 3 Si 0.95 46.84 27.74 68.60 1.90 48.75 16 4 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.27 -12.55 6.52 99.48 0.65 -11.90 16 7 C -0.22 -12.64 10.47 84.04 0.88 -11.76 16 8 H 0.07 3.99 8.06 -2.91 -0.02 3.97 16 9 N -0.75 -36.21 5.29 -343.46 -1.82 -38.03 16 10 C 0.18 6.79 5.95 86.38 0.51 7.30 16 11 C 0.11 3.52 2.02 31.21 0.06 3.58 16 12 H 0.03 1.14 7.27 -2.39 -0.02 1.12 16 13 C 0.08 2.15 4.41 87.26 0.38 2.54 16 14 N -0.59 -15.22 2.19 -821.33 -1.80 -17.02 16 15 C 0.59 18.00 7.63 86.80 0.66 18.67 16 16 O -0.55 -18.49 16.23 -3.87 -0.06 -18.55 16 17 C 0.05 1.53 6.63 42.02 0.28 1.81 16 18 C -0.23 -6.83 10.66 22.76 0.24 -6.58 16 19 C 0.25 6.76 7.90 133.00 1.05 7.81 16 20 N -0.49 -10.84 10.48 -192.59 -2.02 -12.86 16 21 C 0.19 2.36 11.27 85.31 0.96 3.32 16 22 C -0.19 -2.10 10.05 22.14 0.22 -1.88 16 23 C 0.13 2.60 11.30 83.29 0.94 3.54 16 24 N -0.31 -8.22 3.90 -192.50 -0.75 -8.97 16 25 N -0.28 -8.44 7.77 -48.78 -0.38 -8.82 16 26 C 0.11 2.16 6.12 86.38 0.53 2.69 16 27 C -0.15 -2.77 5.78 30.30 0.18 -2.60 16 28 C 0.06 1.63 6.38 71.50 0.46 2.09 16 29 O -0.40 -13.18 9.18 -117.87 -1.08 -14.26 16 30 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 31 H 0.36 17.61 5.39 -92.71 -0.50 17.11 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.11 2.98 5.29 -2.39 -0.01 2.97 16 35 H 0.10 2.42 8.11 -2.39 -0.02 2.40 16 36 H 0.17 4.71 8.06 -2.91 -0.02 4.69 16 37 H 0.23 0.42 8.06 -2.91 -0.02 0.39 16 38 H 0.22 0.46 8.06 -2.91 -0.02 0.43 16 39 H 0.19 3.42 8.06 -2.91 -0.02 3.40 16 40 H 0.09 1.88 7.07 -2.39 -0.02 1.86 16 41 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.08 1.58 8.01 -2.39 -0.02 1.56 16 44 H 0.03 0.97 7.40 -2.39 -0.02 0.95 16 45 H 0.10 2.29 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -80.91 367.42 2.60 -78.32 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.47 Total: 25.15 kcal Atomic # 6 Polarization: 19.92 SS G_CDS: 7.83 Total: 27.75 kcal Atomic # 7 Polarization: -140.69 SS G_CDS: -6.46 Total: -147.16 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -1.14 Total: -32.81 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.90 Total: 48.75 kcal Total: -80.91 2.60 -78.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201695157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.270 kcal (2) G-P(sol) polarization free energy of solvation -80.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds