Wall clock time and date at job start Sat Apr 11 2020 07:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 120.00057 * 2 1 4 4 H 1.48505 * 109.46758 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47359 * 299.99764 * 3 2 1 6 6 H 1.48501 * 109.46995 * 60.00560 * 3 2 1 7 7 C 1.38954 * 119.99477 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99613 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00370 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00023 * 179.97438 * 9 7 2 11 11 O 1.21290 * 119.99736 * 359.97438 * 10 9 7 12 12 C 1.50693 * 119.99748 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47059 * 180.02562 * 12 10 9 14 14 C 1.46394 * 111.00201 * 63.26518 * 13 12 10 15 15 C 1.53151 * 109.55891 * 190.16914 * 14 13 12 16 16 C 1.53159 * 108.60600 * 298.58077 * 15 14 13 17 17 H 1.08995 * 113.89620 * 271.05452 * 16 15 14 18 18 C 1.53911 * 111.74438 * 138.52861 * 16 15 14 19 19 N 1.47210 * 87.74095 * 273.17722 * 18 16 15 20 20 C 1.34775 * 136.37706 * 152.02335 * 19 18 16 21 21 O 1.21510 * 120.00069 * 185.48296 * 20 19 18 22 22 C 1.48140 * 120.00005 * 5.47732 * 20 19 18 23 23 C 1.40111 * 121.14474 * 6.36349 * 22 20 19 24 24 C 1.38502 * 117.82341 * 180.02562 * 23 22 20 25 25 N 1.31919 * 119.96701 * 0.02562 * 24 23 22 26 26 N 1.28277 * 122.52088 * 0.02562 * 25 24 23 27 27 C 1.31923 * 122.32208 * 359.97438 * 26 25 24 28 28 C 1.46628 * 87.24379 * 332.27606 * 19 18 16 29 29 H 1.09000 * 111.72999 * 275.09977 * 28 19 18 30 30 C 1.45494 * 111.00286 * 190.00324 * 13 12 10 31 31 H 0.97008 * 119.99834 * 359.97438 * 1 2 3 32 32 H 0.97000 * 119.99711 * 0.02562 * 9 7 2 33 33 H 1.09008 * 109.47543 * 59.99975 * 12 10 9 34 34 H 1.09003 * 109.47496 * 300.00267 * 12 10 9 35 35 H 1.09002 * 109.54697 * 310.34196 * 14 13 12 36 36 H 1.09003 * 109.54966 * 70.52410 * 14 13 12 37 37 H 1.09000 * 110.07345 * 178.60995 * 15 14 13 38 38 H 1.09002 * 109.27583 * 58.08297 * 15 14 13 39 39 H 1.08994 * 113.50455 * 158.45581 * 18 16 15 40 40 H 1.08998 * 113.56517 * 27.90729 * 18 16 15 41 41 H 1.08003 * 121.08925 * 0.02579 * 23 22 20 42 42 H 1.07994 * 120.01753 * 180.02562 * 24 23 22 43 43 H 1.08003 * 120.17446 * 180.02562 * 27 26 25 44 44 H 1.09003 * 108.58266 * 63.79298 * 30 13 12 45 45 H 1.09002 * 108.57599 * 306.12728 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3964 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5580 -0.0016 11 8 3.2100 -3.5579 -0.0030 12 6 1.2435 -4.8629 -0.0022 13 7 2.1980 -5.9795 -0.0027 14 6 3.0063 -5.9794 1.2179 15 6 4.1499 -6.9881 1.0757 16 6 3.5494 -8.3840 0.8849 17 1 3.3622 -8.9154 1.8179 18 6 4.3086 -9.1901 -0.1841 19 7 3.4326 -8.5690 -1.1910 20 6 3.5225 -8.2464 -2.4965 21 8 2.6220 -7.6328 -3.0341 22 6 4.7192 -8.6398 -3.2760 23 6 5.7099 -9.4590 -2.7188 24 6 6.8000 -9.7838 -3.5090 25 7 6.8800 -9.3238 -4.7428 26 7 5.9770 -8.5726 -5.2586 27 6 4.8999 -8.2049 -4.5916 28 6 2.4209 -8.4527 -0.1361 29 1 1.8378 -9.3678 -0.0335 30 6 1.5201 -7.2450 -0.2392 31 1 -0.4850 0.8401 0.0004 32 1 0.3532 -2.3907 -0.0005 33 1 0.6164 -4.9201 -0.8920 34 1 0.6171 -4.9213 0.8880 35 1 3.4173 -4.9834 1.3831 36 1 2.3845 -6.2627 2.0672 37 1 4.7719 -6.9771 1.9707 38 1 4.7532 -6.7278 0.2059 39 1 4.1720 -10.2677 -0.0943 40 1 5.3558 -8.9045 -0.2832 41 1 5.6262 -9.8253 -1.7063 42 1 7.5842 -10.4134 -3.1154 43 1 4.1611 -7.5716 -5.0602 44 1 1.0815 -7.2229 -1.2368 45 1 0.7152 -7.3490 0.4884 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221829974.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:20 Heat of formation + Delta-G solvation = 28.446653 kcal Electronic energy + Delta-G solvation = -30411.257666 eV Core-core repulsion = 26237.415560 eV Total energy + Delta-G solvation = -4173.842105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.57642 -41.81386 -40.30896 -39.28964 -37.42626 -35.87996 -34.60867 -33.61242 -33.39099 -32.94493 -30.89203 -29.84123 -27.53162 -26.52233 -25.92039 -25.53709 -24.56879 -22.85600 -21.88759 -21.07769 -19.91523 -19.58014 -18.67471 -18.35449 -17.83194 -17.71342 -17.43969 -16.83021 -16.52361 -16.43062 -16.29429 -15.98951 -15.81053 -15.60394 -15.20497 -15.09949 -14.77150 -14.68226 -14.43408 -14.02411 -13.75046 -13.55981 -13.25717 -13.14819 -13.02140 -12.78626 -12.43555 -12.43176 -12.14816 -12.11671 -12.03497 -11.75429 -11.50947 -11.40795 -11.36561 -11.24915 -11.02760 -10.64579 -10.27056 -10.01893 -9.69047 -9.02528 -8.49000 -5.97809 -0.77216 -0.21461 1.33890 1.38717 1.53198 1.59335 1.70540 2.02154 2.25790 2.54048 2.71315 3.00206 3.08035 3.17520 3.25203 3.34366 3.38300 3.52146 3.66694 3.78567 3.96789 4.09414 4.21577 4.24202 4.36458 4.38226 4.39363 4.46690 4.49665 4.50192 4.55298 4.63995 4.69646 4.72635 4.82821 4.97070 5.00113 5.08507 5.11215 5.27860 5.38156 5.44736 5.89729 6.12792 6.42693 6.58026 6.64922 6.98196 7.10395 7.51489 7.53403 8.09217 8.68873 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012958 B = 0.002770 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2160.277141 B =10105.639182 C =11235.720363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.014 4.014 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.272 1.272 6 H -0.267 1.267 7 C -0.331 4.331 8 H 0.078 0.922 9 N -0.575 5.575 10 C 0.443 3.557 11 O -0.611 6.611 12 C 0.066 3.934 13 N -0.540 5.540 14 C 0.054 3.946 15 C -0.089 4.089 16 C -0.105 4.105 17 H 0.149 0.851 18 C 0.090 3.910 19 N -0.631 5.631 20 C 0.585 3.415 21 O -0.566 6.566 22 C -0.135 4.135 23 C -0.069 4.069 24 C 0.047 3.953 25 N -0.263 5.263 26 N -0.273 5.273 27 C 0.079 3.921 28 C 0.137 3.863 29 H 0.135 0.865 30 C 0.055 3.945 31 H 0.278 0.722 32 H 0.395 0.605 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.040 0.960 37 H 0.095 0.905 38 H 0.041 0.959 39 H 0.142 0.858 40 H 0.098 0.902 41 H 0.202 0.798 42 H 0.227 0.773 43 H 0.171 0.829 44 H 0.061 0.939 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 -27.352 5.465 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.214 4.214 3 Si 0.817 3.183 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.192 1.192 7 C -0.460 4.460 8 H 0.096 0.904 9 N -0.213 5.213 10 C 0.231 3.769 11 O -0.497 6.497 12 C -0.065 4.065 13 N -0.266 5.266 14 C -0.073 4.073 15 C -0.126 4.126 16 C -0.123 4.123 17 H 0.167 0.833 18 C -0.030 4.030 19 N -0.365 5.365 20 C 0.374 3.626 21 O -0.445 6.445 22 C -0.149 4.149 23 C -0.099 4.099 24 C -0.117 4.117 25 N -0.104 5.104 26 N -0.113 5.113 27 C -0.087 4.087 28 C 0.035 3.965 29 H 0.153 0.847 30 C -0.073 4.073 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.114 0.886 38 H 0.060 0.940 39 H 0.160 0.840 40 H 0.116 0.884 41 H 0.218 0.782 42 H 0.244 0.756 43 H 0.189 0.811 44 H 0.080 0.920 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.565 -26.696 3.132 28.211 hybrid contribution -1.947 1.508 1.252 2.763 sum 6.617 -25.188 4.384 26.410 Atomic orbital electron populations 1.69687 1.06872 1.29226 1.50508 1.26060 0.96561 1.02446 0.96317 0.84865 0.77986 0.77048 0.78393 1.19821 1.19768 1.19234 1.19675 0.92599 0.83957 1.49786 0.90413 1.41950 1.09252 1.04766 1.65317 1.20704 0.88306 0.85849 0.82086 1.90439 1.15573 1.87681 1.56034 1.21572 0.93570 0.88839 1.02507 1.59889 1.25069 1.02031 1.39562 1.22023 0.95466 1.00863 0.88926 1.21367 0.96472 0.92653 1.02140 1.22879 0.94616 0.96167 0.98686 0.83314 1.23898 0.96425 1.00387 0.82313 1.49407 1.21272 1.59295 1.06493 1.17525 0.85615 0.79133 0.80372 1.90796 1.42027 1.41524 1.70130 1.21224 0.97185 1.00541 0.95951 1.23499 0.90970 0.92199 1.03188 1.25119 0.98700 0.97503 0.90406 1.72775 1.19617 1.04777 1.13216 1.73110 0.99558 1.08142 1.30524 1.24543 0.96220 0.95904 0.92004 1.22437 0.91944 0.98103 0.84018 0.84727 1.21448 0.95998 0.88373 1.01522 0.91298 0.77178 0.89146 0.91301 0.92339 0.94222 0.88608 0.93981 0.84017 0.88425 0.78164 0.75625 0.81149 0.92040 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.25 13.05 21.66 0.28 -50.97 16 2 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 3 Si 0.99 44.20 29.55 68.60 2.03 46.23 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.58 -30.95 5.29 -306.99 -1.62 -32.57 16 10 C 0.44 22.22 7.41 87.65 0.65 22.87 16 11 O -0.61 -34.83 13.74 -3.06 -0.04 -34.87 16 12 C 0.07 2.51 5.43 85.56 0.46 2.97 16 13 N -0.54 -18.15 4.36 -909.56 -3.96 -22.11 16 14 C 0.05 1.64 5.06 86.45 0.44 2.07 16 15 C -0.09 -1.82 5.81 30.70 0.18 -1.64 16 16 C -0.10 -1.08 4.56 -10.65 -0.05 -1.13 16 17 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 18 C 0.09 0.57 5.61 81.81 0.46 1.03 16 19 N -0.63 -11.54 3.39 -860.32 -2.91 -14.45 16 20 C 0.58 15.65 7.98 86.87 0.69 16.35 16 21 O -0.57 -20.82 15.79 -3.75 -0.06 -20.88 16 22 C -0.13 -3.02 5.92 -19.83 -0.12 -3.14 16 23 C -0.07 -0.87 9.32 22.79 0.21 -0.65 16 24 C 0.05 0.61 11.30 84.74 0.96 1.57 16 25 N -0.26 -6.05 11.48 -57.34 -0.66 -6.71 16 26 N -0.27 -7.61 11.49 -56.53 -0.65 -8.26 16 27 C 0.08 2.12 10.91 85.04 0.93 3.05 16 28 C 0.14 2.16 4.11 39.36 0.16 2.32 16 29 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 30 C 0.05 1.36 4.95 85.92 0.43 1.79 16 31 H 0.28 14.37 8.31 -92.70 -0.77 13.60 16 32 H 0.39 20.30 7.90 -92.71 -0.73 19.57 16 33 H 0.09 3.35 8.07 -2.38 -0.02 3.34 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.06 2.37 5.51 -2.39 -0.01 2.36 16 36 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.04 1.14 7.71 -2.39 -0.02 1.12 16 39 H 0.14 -0.35 8.14 -2.39 -0.02 -0.37 16 40 H 0.10 0.45 6.60 -2.39 -0.02 0.43 16 41 H 0.20 0.67 4.46 -2.91 -0.01 0.66 16 42 H 0.23 0.53 8.06 -2.91 -0.02 0.51 16 43 H 0.17 4.79 7.75 -2.91 -0.02 4.77 16 44 H 0.06 1.91 6.98 -2.39 -0.02 1.89 16 45 H 0.06 1.14 8.09 -2.39 -0.02 1.12 16 Total: -1.00 -88.51 368.45 -0.60 -89.11 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.32 Total: 26.94 kcal Atomic # 6 Polarization: 21.85 SS G_CDS: 6.68 Total: 28.53 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -9.53 Total: -135.07 kcal Atomic # 8 Polarization: -55.65 SS G_CDS: -0.10 Total: -55.75 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -88.51 -0.60 -89.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221829974.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.558 kcal (2) G-P(sol) polarization free energy of solvation -88.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds