Wall clock time and date at job start Sat Apr 11 2020 07:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41388 * 126.58100 * 2 1 4 4 C 1.34511 * 106.84269 * 179.97438 * 3 2 1 5 5 O 1.34311 * 108.41820 * 359.73464 * 4 3 2 6 6 C 1.34301 * 109.47559 * 0.43829 * 5 4 3 7 7 C 1.50704 * 125.78809 * 179.82797 * 6 5 4 8 8 C 1.50706 * 109.46782 * 269.69099 * 7 6 5 9 9 O 1.21271 * 120.00215 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47037 * 60.00258 * 22 20 18 24 24 H 1.48505 * 109.46825 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46970 * 299.99868 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.08997 * 109.47136 * 270.04358 * 1 2 3 30 30 H 1.09002 * 109.46902 * 30.04405 * 1 2 3 31 31 H 1.09002 * 109.46938 * 150.04319 * 1 2 3 32 32 H 1.07997 * 126.57961 * 359.97438 * 3 2 1 33 33 H 1.07996 * 125.79041 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.47312 * 149.69494 * 7 6 5 35 35 H 1.08996 * 109.47210 * 29.68804 * 7 6 5 36 36 H 0.96996 * 120.00676 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 38 38 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 39 39 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 40 40 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 41 41 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 42 42 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 43 43 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 45 45 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6811 0.0006 5 8 3.5848 -0.6617 0.0068 6 6 2.3086 -1.0802 0.0006 7 6 1.8522 -2.5164 0.0009 8 6 1.7006 -2.9955 -1.4199 9 8 1.9391 -2.2446 -2.3418 10 7 1.2988 -4.2583 -1.6659 11 6 1.1508 -4.7240 -3.0470 12 6 0.6945 -6.1602 -3.0468 13 6 -0.5803 -6.6048 -3.1411 14 7 -0.5121 -7.9558 -3.1045 15 6 -1.6501 -8.8752 -3.1811 16 6 -2.9570 -8.2065 -3.6444 17 7 -3.6187 -9.0057 -2.5917 18 6 -4.8916 -9.4729 -2.3999 19 1 -5.1266 -10.0544 -1.5206 20 6 -5.8798 -9.1989 -3.3354 21 7 -5.5933 -8.4906 -4.4070 22 14 -7.6164 -9.8356 -3.0732 23 1 -8.1596 -9.2845 -1.8057 24 1 -8.4759 -9.4102 -4.2071 25 1 -7.5939 -11.3185 -2.9989 26 6 -2.3569 -9.1002 -1.8322 27 7 0.7246 -8.2942 -2.9905 28 7 1.4695 -7.2463 -2.9497 29 1 -0.3633 0.0008 1.0276 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3633 -0.8904 -0.5132 32 1 2.0368 2.1690 -0.0004 33 1 4.5060 1.2923 0.0011 34 1 0.8937 -2.5930 0.5143 35 1 2.5901 -3.1321 0.5151 36 1 1.1076 -4.8588 -0.9286 37 1 2.1092 -4.6477 -3.5608 38 1 0.4130 -4.1079 -3.5611 39 1 -1.4723 -6.0027 -3.2322 40 1 -1.4163 -9.7973 -3.7133 41 1 -2.9883 -7.1318 -3.4649 42 1 -3.2550 -8.4787 -4.6569 43 1 -6.2840 -8.2988 -5.0606 44 1 -2.1765 -10.0847 -1.4005 45 1 -2.2099 -8.2895 -1.1185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107209041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:53 Heat of formation + Delta-G solvation = 135.736225 kcal Electronic energy + Delta-G solvation = -28678.392635 eV Core-core repulsion = 24509.202955 eV Total energy + Delta-G solvation = -4169.189680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.11639 -42.78519 -39.72046 -38.40285 -35.33568 -34.45978 -33.46115 -32.52530 -31.97420 -31.20519 -29.17049 -28.00660 -27.14403 -25.78910 -25.25477 -24.41441 -21.98943 -21.75807 -21.24373 -20.96422 -19.80392 -19.64651 -17.85456 -17.29391 -17.24749 -16.73903 -16.33224 -15.93418 -15.78327 -15.61982 -15.14739 -14.75845 -14.54295 -14.12334 -13.92999 -13.79614 -13.38738 -13.30973 -13.21211 -12.96061 -12.93589 -12.63628 -12.36962 -12.17569 -12.12779 -11.88127 -11.64858 -11.42293 -11.21262 -11.00330 -10.97013 -10.57965 -10.29751 -10.22807 -9.92070 -9.77502 -9.60313 -9.25224 -9.16056 -9.08828 -8.53566 -7.29807 -6.07989 -3.43598 1.48539 1.77873 2.31075 2.43323 2.46266 2.59836 2.78036 3.24493 3.29139 3.30311 3.36483 4.18883 4.29941 4.31335 4.64766 4.65334 4.67888 4.70250 4.72280 4.86763 4.92140 5.02110 5.10465 5.16909 5.26936 5.36816 5.43034 5.47252 5.56037 5.58242 5.65426 5.71552 5.83342 5.99945 6.00985 6.06674 6.11402 6.18512 6.25793 6.36767 6.49415 6.75756 6.95921 6.98583 7.12503 7.28611 7.64102 8.00903 8.69265 8.71988 9.38410 10.15514 11.09128 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.001957 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.188361 B =14304.849593 C =15621.129563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.164 4.164 3 C -0.211 4.211 4 C -0.037 4.037 5 O -0.172 6.172 6 C 0.003 3.997 7 C -0.061 4.061 8 C 0.515 3.485 9 O -0.528 6.528 10 N -0.722 5.722 11 C 0.216 3.784 12 C -0.063 4.063 13 C -0.014 4.014 14 N -0.265 5.265 15 C 0.077 3.923 16 C 0.164 3.836 17 N -0.598 5.598 18 C -0.234 4.234 19 H 0.087 0.913 20 C 0.000 4.000 21 N -0.919 5.919 22 Si 0.920 3.080 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.281 1.281 26 C 0.120 3.880 27 N -0.088 5.088 28 N -0.267 5.267 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.147 0.853 33 H 0.202 0.798 34 H 0.123 0.877 35 H 0.113 0.887 36 H 0.404 0.596 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.191 0.809 40 H 0.132 0.868 41 H 0.041 0.959 42 H 0.092 0.908 43 H 0.260 0.740 44 H 0.062 0.938 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.477 14.156 8.716 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.165 4.165 3 C -0.230 4.230 4 C -0.104 4.104 5 O -0.068 6.068 6 C -0.048 4.048 7 C -0.101 4.101 8 C 0.301 3.699 9 O -0.404 6.404 10 N -0.375 5.375 11 C 0.091 3.909 12 C -0.202 4.202 13 C -0.168 4.168 14 N -0.057 5.057 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.325 5.325 18 C -0.360 4.360 19 H 0.105 0.895 20 C -0.198 4.198 21 N -0.565 5.565 22 Si 0.749 3.251 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.207 1.207 26 C -0.007 4.007 27 N -0.067 5.067 28 N -0.134 5.134 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.164 0.836 33 H 0.218 0.782 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.238 0.762 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.208 0.792 40 H 0.150 0.850 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 14.499 13.215 8.037 21.201 hybrid contribution -2.004 0.452 0.322 2.080 sum 12.495 13.667 8.359 20.317 Atomic orbital electron populations 1.20192 0.89217 1.02891 1.01836 1.20178 0.97085 0.92013 1.07243 1.21681 0.92634 0.99749 1.08939 1.23937 0.99724 0.80527 1.06257 1.83981 1.28601 1.22836 1.71338 1.21205 0.81232 0.94890 1.07435 1.20071 1.04336 0.89850 0.95826 1.20335 0.77003 0.81643 0.90965 1.90754 1.49104 1.54580 1.45977 1.46003 1.69341 1.13011 1.09153 1.19281 1.02286 0.86323 0.82996 1.21710 0.90441 0.96167 1.11926 1.23512 1.00777 0.85252 1.07266 1.47928 1.07771 1.06512 1.43502 1.25301 0.80840 0.93913 1.02456 1.22747 0.82091 0.94384 0.97090 1.45660 1.05354 1.60197 1.21270 1.18951 0.82711 1.28299 1.06087 0.89534 1.24854 0.98624 0.99620 0.96716 1.69748 1.33431 1.41928 1.11371 0.86089 0.83113 0.78601 0.77302 1.20854 1.21305 1.20732 1.22928 0.85664 1.00092 0.92022 1.78283 0.87738 1.21281 1.19444 1.75027 1.26603 0.95147 1.16589 0.91446 0.91397 0.91697 0.83560 0.78160 0.85866 0.86919 0.76176 0.89725 0.89544 0.79198 0.85028 0.94094 0.89019 0.93013 0.91971 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.99 36.01 0.36 -0.35 16 2 C -0.16 -1.72 6.16 -104.74 -0.65 -2.37 16 3 C -0.21 -2.01 10.87 -39.70 -0.43 -2.44 16 4 C -0.04 -0.33 12.09 29.41 0.36 0.02 16 5 O -0.17 -1.97 10.65 5.69 0.06 -1.91 16 6 C 0.00 0.03 5.81 -35.62 -0.21 -0.18 16 7 C -0.06 -0.50 5.85 -29.03 -0.17 -0.67 16 8 C 0.52 5.73 7.82 -10.98 -0.09 5.64 16 9 O -0.53 -8.09 16.03 5.56 0.09 -8.00 16 10 N -0.72 -7.19 5.55 -61.47 -0.34 -7.53 16 11 C 0.22 2.48 6.23 -5.20 -0.03 2.45 16 12 C -0.06 -0.86 6.61 -82.78 -0.55 -1.40 16 13 C -0.01 -0.20 10.72 -17.05 -0.18 -0.38 16 14 N -0.26 -4.17 3.54 -56.31 -0.20 -4.37 16 15 C 0.08 1.29 5.14 -70.15 -0.36 0.93 16 16 C 0.16 3.27 6.90 -2.84 -0.02 3.25 16 17 N -0.60 -13.50 3.70 -177.89 -0.66 -14.15 16 18 C -0.23 -5.91 10.70 -15.06 -0.16 -6.07 16 19 H 0.09 2.11 7.83 -52.48 -0.41 1.69 16 20 C 0.00 -0.01 5.50 -17.43 -0.10 -0.11 16 21 N -0.92 -24.76 11.39 55.49 0.63 -24.13 16 22 Si 0.92 20.41 29.55 -169.99 -5.02 15.39 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.12 2.15 8.74 -2.96 -0.03 2.13 16 27 N -0.09 -1.50 13.17 60.35 0.79 -0.70 16 28 N -0.27 -4.31 12.41 33.29 0.41 -3.89 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.55 7.78 -51.93 -0.40 0.15 16 32 H 0.15 1.07 8.06 -52.49 -0.42 0.64 16 33 H 0.20 1.02 8.06 -52.49 -0.42 0.60 16 34 H 0.12 0.69 7.76 -51.93 -0.40 0.29 16 35 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.40 3.32 8.46 -40.82 -0.35 2.97 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.19 2.31 6.73 -52.49 -0.35 1.96 16 40 H 0.13 2.15 8.14 -51.93 -0.42 1.72 16 41 H 0.04 0.80 6.31 -51.93 -0.33 0.47 16 42 H 0.09 2.05 7.16 -51.93 -0.37 1.68 16 43 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 388.06 15.07 5.85 5.85 Total: -1.00 -32.83 388.06 -6.62 -39.45 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.98 Total: 3.57 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.25 Total: 0.43 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: 0.64 Total: -54.78 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.15 Total: -9.91 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.83 -6.62 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107209041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.183 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds