Wall clock time and date at job start Sat Apr 11 2020 07:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41388 * 126.58100 * 2 1 4 4 C 1.34511 * 106.84269 * 179.97438 * 3 2 1 5 5 O 1.34311 * 108.41820 * 359.73464 * 4 3 2 6 6 C 1.34301 * 109.47559 * 0.43829 * 5 4 3 7 7 C 1.50704 * 125.78809 * 179.82797 * 6 5 4 8 8 C 1.50706 * 109.46782 * 269.69099 * 7 6 5 9 9 O 1.21271 * 120.00215 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47037 * 60.00258 * 22 20 18 24 24 H 1.48505 * 109.46825 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46970 * 299.99868 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.08997 * 109.47136 * 270.04358 * 1 2 3 30 30 H 1.09002 * 109.46902 * 30.04405 * 1 2 3 31 31 H 1.09002 * 109.46938 * 150.04319 * 1 2 3 32 32 H 1.07997 * 126.57961 * 359.97438 * 3 2 1 33 33 H 1.07996 * 125.79041 * 180.02562 * 4 3 2 34 34 H 1.08998 * 109.47312 * 149.69494 * 7 6 5 35 35 H 1.08996 * 109.47210 * 29.68804 * 7 6 5 36 36 H 0.96996 * 120.00676 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 38 38 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 39 39 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 40 40 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 41 41 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 42 42 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 43 43 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 44 44 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 45 45 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1354 0.0000 4 6 3.6157 0.6811 0.0006 5 8 3.5848 -0.6617 0.0068 6 6 2.3086 -1.0802 0.0006 7 6 1.8522 -2.5164 0.0009 8 6 1.7006 -2.9955 -1.4199 9 8 1.9391 -2.2446 -2.3418 10 7 1.2988 -4.2583 -1.6659 11 6 1.1508 -4.7240 -3.0470 12 6 0.6945 -6.1602 -3.0468 13 6 -0.5803 -6.6048 -3.1411 14 7 -0.5121 -7.9558 -3.1045 15 6 -1.6501 -8.8752 -3.1811 16 6 -2.9570 -8.2065 -3.6444 17 7 -3.6187 -9.0057 -2.5917 18 6 -4.8916 -9.4729 -2.3999 19 1 -5.1266 -10.0544 -1.5206 20 6 -5.8798 -9.1989 -3.3354 21 7 -5.5933 -8.4906 -4.4070 22 14 -7.6164 -9.8356 -3.0732 23 1 -8.1596 -9.2845 -1.8057 24 1 -8.4759 -9.4102 -4.2071 25 1 -7.5939 -11.3185 -2.9989 26 6 -2.3569 -9.1002 -1.8322 27 7 0.7246 -8.2942 -2.9905 28 7 1.4695 -7.2463 -2.9497 29 1 -0.3633 0.0008 1.0276 30 1 -0.3633 0.8896 -0.5145 31 1 -0.3633 -0.8904 -0.5132 32 1 2.0368 2.1690 -0.0004 33 1 4.5060 1.2923 0.0011 34 1 0.8937 -2.5930 0.5143 35 1 2.5901 -3.1321 0.5151 36 1 1.1076 -4.8588 -0.9286 37 1 2.1092 -4.6477 -3.5608 38 1 0.4130 -4.1079 -3.5611 39 1 -1.4723 -6.0027 -3.2322 40 1 -1.4163 -9.7973 -3.7133 41 1 -2.9883 -7.1318 -3.4649 42 1 -3.2550 -8.4787 -4.6569 43 1 -6.2840 -8.2988 -5.0606 44 1 -2.1765 -10.0847 -1.4005 45 1 -2.2099 -8.2895 -1.1185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107209041.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:28:52 Heat of formation + Delta-G solvation = 113.657727 kcal Electronic energy + Delta-G solvation = -28679.350031 eV Core-core repulsion = 24509.202955 eV Total energy + Delta-G solvation = -4170.147076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.34565 -43.49845 -40.63515 -39.92075 -36.33961 -35.18502 -34.95237 -33.69372 -33.21583 -32.25875 -29.89885 -29.67887 -28.06974 -26.90801 -26.46913 -25.96038 -23.41480 -22.57153 -22.30719 -21.83956 -21.12581 -20.52433 -19.06353 -18.65408 -18.03611 -17.98526 -17.42356 -16.96567 -16.76157 -16.64291 -16.61202 -15.97058 -15.73637 -15.26308 -14.93742 -14.72036 -14.60479 -14.34385 -14.14891 -13.92186 -13.71523 -13.62124 -13.55828 -13.38228 -13.32287 -12.99367 -12.90876 -12.73717 -12.61670 -12.42896 -12.31352 -12.14140 -11.79335 -11.70885 -11.22220 -10.99749 -10.86723 -10.48177 -10.30336 -10.15745 -9.24923 -9.09701 -7.99937 -5.35072 0.56859 0.76985 1.25945 1.30110 1.49802 1.51291 1.57057 1.59105 1.68657 2.10183 2.43663 2.50778 3.08607 3.13035 3.32318 3.34633 3.63459 3.74484 3.92256 3.93606 4.01709 4.02921 4.09484 4.17046 4.29847 4.46694 4.50116 4.58251 4.60966 4.66483 4.70697 4.83001 4.91465 4.93287 5.00060 5.01789 5.06272 5.11398 5.17801 5.31129 5.35653 5.37791 5.67172 5.70324 5.78404 6.24748 6.48392 6.81301 7.18053 7.46752 7.50030 8.34851 9.16570 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014709 B = 0.001957 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.188361 B =14304.849593 C =15621.129563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.181 4.181 3 C -0.229 4.229 4 C -0.041 4.041 5 O -0.193 6.193 6 C -0.022 4.022 7 C -0.056 4.056 8 C 0.517 3.483 9 O -0.575 6.575 10 N -0.712 5.712 11 C 0.220 3.780 12 C -0.049 4.049 13 C -0.012 4.012 14 N -0.269 5.269 15 C 0.104 3.896 16 C 0.165 3.835 17 N -0.628 5.628 18 C -0.238 4.238 19 H 0.091 0.909 20 C -0.056 4.056 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.277 1.277 24 H -0.296 1.296 25 H -0.276 1.276 26 C 0.126 3.874 27 N -0.109 5.109 28 N -0.281 5.281 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.164 0.836 33 H 0.235 0.765 34 H 0.152 0.848 35 H 0.134 0.866 36 H 0.415 0.585 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.208 0.792 40 H 0.137 0.863 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.253 0.747 44 H 0.075 0.925 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.741 14.551 10.267 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.182 4.182 3 C -0.248 4.248 4 C -0.107 4.107 5 O -0.089 6.089 6 C -0.072 4.072 7 C -0.095 4.095 8 C 0.305 3.695 9 O -0.454 6.454 10 N -0.365 5.365 11 C 0.095 3.905 12 C -0.188 4.188 13 C -0.165 4.165 14 N -0.061 5.061 15 C 0.002 3.998 16 C 0.039 3.961 17 N -0.355 5.355 18 C -0.366 4.366 19 H 0.109 0.891 20 C -0.250 4.250 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.202 1.202 24 H -0.222 1.222 25 H -0.202 1.202 26 C 0.000 4.000 27 N -0.087 5.087 28 N -0.148 5.148 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.181 0.819 33 H 0.251 0.749 34 H 0.169 0.831 35 H 0.152 0.848 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.225 0.775 40 H 0.155 0.845 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.795 13.580 9.637 22.275 hybrid contribution -1.971 0.411 -0.137 2.018 sum 12.824 13.991 9.499 21.224 Atomic orbital electron populations 1.20230 0.88123 1.02818 1.02840 1.20600 0.98179 0.92468 1.06973 1.22038 0.92889 1.00552 1.09294 1.24682 1.01043 0.80033 1.04989 1.83968 1.29204 1.23996 1.71770 1.21672 0.81179 0.96124 1.08222 1.20183 1.06396 0.88891 0.93996 1.20812 0.75781 0.81213 0.91727 1.90736 1.51241 1.55794 1.47603 1.45881 1.68748 1.12975 1.08868 1.19232 1.02104 0.85228 0.83978 1.21893 0.89960 0.96380 1.10577 1.23845 1.01601 0.84621 1.06456 1.47724 1.07311 1.06958 1.44100 1.24696 0.80168 0.93531 1.01405 1.22621 0.83554 0.94674 0.95277 1.45894 1.05807 1.60731 1.23053 1.19296 0.84056 1.27470 1.05787 0.89123 1.25592 1.01940 1.00590 0.96873 1.69905 1.33873 1.43663 1.12143 0.85153 0.79155 0.78168 0.76849 1.20246 1.22185 1.20180 1.23021 0.83408 1.01175 0.92409 1.78293 0.87944 1.21792 1.20686 1.75015 1.27025 0.95772 1.16969 0.89836 0.91245 0.91982 0.81858 0.74925 0.83051 0.84760 0.74886 0.90540 0.88629 0.77490 0.84534 0.93391 0.91889 0.93803 0.90650 0.92671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 9.99 71.24 0.71 -0.59 16 2 C -0.18 -3.63 6.16 -19.94 -0.12 -3.76 16 3 C -0.23 -4.13 10.87 22.19 0.24 -3.89 16 4 C -0.04 -0.69 12.09 66.97 0.81 0.11 16 5 O -0.19 -4.30 10.65 -2.54 -0.03 -4.33 16 6 C -0.02 -0.46 5.81 24.83 0.14 -0.32 16 7 C -0.06 -0.81 5.85 29.10 0.17 -0.64 16 8 C 0.52 10.84 7.82 87.66 0.69 11.52 16 9 O -0.57 -17.41 16.03 -3.00 -0.05 -17.46 16 10 N -0.71 -12.88 5.55 -466.80 -2.59 -15.47 16 11 C 0.22 4.73 6.23 85.63 0.53 5.26 16 12 C -0.05 -1.23 6.61 41.59 0.28 -0.96 16 13 C -0.01 -0.31 10.72 83.49 0.89 0.59 16 14 N -0.27 -8.01 3.54 -332.05 -1.18 -9.19 16 15 C 0.10 3.35 5.14 46.75 0.24 3.59 16 16 C 0.17 6.53 6.90 86.44 0.60 7.13 16 17 N -0.63 -27.81 3.70 -716.72 -2.65 -30.46 16 18 C -0.24 -11.92 10.70 84.03 0.90 -11.03 16 19 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 20 C -0.06 -2.88 5.50 84.86 0.47 -2.42 16 21 N -0.95 -51.71 11.39 21.65 0.25 -51.46 16 22 Si 0.98 41.89 29.55 68.60 2.03 43.92 16 23 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.30 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 26 C 0.13 4.27 8.74 86.48 0.76 5.03 16 27 N -0.11 -3.51 13.17 37.02 0.49 -3.03 16 28 N -0.28 -8.65 12.41 -48.60 -0.60 -9.26 16 29 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 0.98 7.78 -2.39 -0.02 0.96 16 32 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 33 H 0.23 1.94 8.06 -2.91 -0.02 1.92 16 34 H 0.15 1.29 7.76 -2.39 -0.02 1.27 16 35 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.41 5.80 8.46 -92.71 -0.78 5.02 16 37 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 38 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.21 4.58 6.73 -2.91 -0.02 4.56 16 40 H 0.14 4.29 8.14 -2.38 -0.02 4.27 16 41 H 0.05 1.82 6.31 -2.39 -0.02 1.81 16 42 H 0.06 2.87 7.16 -2.39 -0.02 2.85 16 43 H 0.25 13.57 8.31 -92.70 -0.77 12.80 16 44 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -70.92 388.06 3.22 -67.71 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.25 Total: 19.38 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 7.30 Total: 9.65 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -6.29 Total: -118.87 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.08 Total: -21.78 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -70.92 3.22 -67.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107209041.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.365 kcal (2) G-P(sol) polarization free energy of solvation -70.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds