Wall clock time and date at job start Sat Apr 11 2020 07:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.51558 * 2 1 4 4 N 1.46497 * 109.46777 * 60.10545 * 3 2 1 5 5 C 1.34779 * 119.99647 * 180.02562 * 4 3 2 6 6 O 1.21626 * 120.00198 * 359.97438 * 5 4 3 7 7 C 1.47210 * 119.99641 * 180.02562 * 5 4 3 8 8 C 1.37751 * 119.93673 * 179.72648 * 7 5 4 9 9 C 1.39867 * 119.92926 * 179.73149 * 8 7 5 10 10 C 1.36302 * 119.81817 * 0.53775 * 9 8 7 11 11 C 1.40778 * 119.70728 * 359.73350 * 10 9 8 12 12 N 1.32818 * 132.73987 * 180.02562 * 11 10 9 13 13 C 1.32375 * 109.74456 * 179.97438 * 12 11 10 14 14 N 1.31385 * 109.61427 * 0.02562 * 13 12 11 15 15 N 1.36549 * 119.88141 * 359.97438 * 11 10 9 16 16 C 1.53297 * 109.50864 * 239.85260 * 2 1 3 17 17 N 1.47161 * 108.38409 * 292.37590 * 16 2 1 18 18 C 1.36932 * 120.97818 * 129.48616 * 17 16 2 19 19 H 1.08003 * 119.99805 * 206.21534 * 18 17 16 20 20 C 1.38816 * 120.00222 * 26.21787 * 18 17 16 21 21 N 1.31615 * 119.99874 * 16.92074 * 20 18 17 22 22 Si 1.86802 * 119.99757 * 196.91979 * 20 18 17 23 23 H 1.48499 * 109.47015 * 94.61787 * 22 20 18 24 24 H 1.48495 * 109.47062 * 214.62143 * 22 20 18 25 25 H 1.48501 * 109.47048 * 334.61927 * 22 20 18 26 26 C 1.47144 * 118.03546 * 309.46881 * 17 16 2 27 27 C 1.53295 * 108.38791 * 50.53058 * 26 17 16 28 28 O 1.42953 * 109.51421 * 120.10786 * 2 1 3 29 29 H 1.09005 * 109.46772 * 299.89548 * 1 2 3 30 30 H 1.08998 * 109.47452 * 59.89553 * 1 2 3 31 31 H 1.08997 * 109.47406 * 179.89718 * 1 2 3 32 32 H 1.08994 * 109.47317 * 180.10396 * 3 2 1 33 33 H 1.08999 * 109.46930 * 300.10503 * 3 2 1 34 34 H 0.97002 * 120.00259 * 359.97438 * 4 3 2 35 35 H 1.08000 * 120.04077 * 359.97438 * 8 7 5 36 36 H 1.07996 * 120.09487 * 180.29418 * 9 8 7 37 37 H 1.07996 * 120.15031 * 179.70872 * 10 9 8 38 38 H 1.07995 * 125.18967 * 179.97438 * 13 12 11 39 39 H 1.08997 * 109.68565 * 52.10056 * 16 2 1 40 40 H 1.08997 * 109.68473 * 172.61990 * 16 2 1 41 41 H 0.97006 * 119.99439 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.68191 * 290.80778 * 26 17 16 43 43 H 1.08994 * 109.68285 * 170.25684 * 26 17 16 44 44 H 1.09004 * 109.50951 * 67.62473 * 27 26 17 45 45 H 1.08997 * 109.51466 * 187.72498 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.5554 2.1323 1.1974 5 6 1.8819 3.4224 1.4107 6 8 2.5802 4.0135 0.6093 7 6 1.3942 4.1158 2.6142 8 6 1.7334 5.4327 2.8338 9 6 1.2654 6.0930 3.9745 10 6 0.4838 5.4266 4.8706 11 6 0.1490 4.0792 4.6377 12 7 -0.5774 3.2002 5.3188 13 6 -0.5963 2.0427 4.6768 14 7 0.1105 2.1387 3.5735 15 7 0.6076 3.4482 3.5170 16 6 2.0419 -0.7257 -1.2495 17 7 1.6958 -2.1513 -1.1328 18 6 1.0614 -2.8083 -2.1530 19 1 0.4482 -3.6717 -1.9404 20 6 1.2063 -2.3649 -3.4604 21 7 2.1884 -1.5462 -3.7725 22 14 0.0073 -2.9301 -4.7766 23 1 -1.0770 -1.9260 -4.9226 24 1 0.7238 -3.0764 -6.0690 25 1 -0.5782 -4.2373 -4.3845 26 6 2.0520 -2.8497 0.1124 27 6 1.5396 -2.0205 1.2955 28 8 2.0075 -0.6759 1.1656 29 1 -0.3633 0.5122 0.8910 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3634 -1.0276 -0.0018 32 1 3.1311 1.4413 -0.0019 33 1 1.6766 1.9568 -0.8890 34 1 0.9981 1.6610 1.8364 35 1 2.3568 5.9561 2.1240 36 1 1.5257 7.1268 4.1469 37 1 0.1234 5.9298 5.7556 38 1 -1.1132 1.1548 5.0097 39 1 1.5703 -0.3050 -2.1376 40 1 3.1239 -0.6148 -1.3211 41 1 2.2894 -1.2361 -4.6861 42 1 3.1351 -2.9532 0.1783 43 1 1.5871 -3.8354 0.1262 44 1 0.4496 -2.0279 1.3003 45 1 1.9107 -2.4475 2.2272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108056252.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:30:05 Heat of formation + Delta-G solvation = 81.146672 kcal Electronic energy + Delta-G solvation = -30984.165298 eV Core-core repulsion = 26812.608437 eV Total energy + Delta-G solvation = -4171.556861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.04661 -40.00293 -38.95698 -37.77680 -35.10895 -34.39997 -33.98200 -31.69256 -31.31399 -31.26083 -30.30124 -27.95237 -26.82296 -25.94385 -24.58785 -23.82048 -23.23680 -22.81246 -21.20784 -20.73904 -18.80539 -18.35332 -17.85966 -17.20546 -16.85450 -16.65228 -16.13894 -15.93455 -15.53866 -15.17068 -14.81641 -14.48528 -14.46248 -14.11715 -13.95246 -13.52908 -13.31261 -13.11275 -13.05069 -12.91805 -12.64088 -12.35623 -11.99361 -11.92242 -11.57636 -11.56333 -11.19762 -11.03435 -10.84207 -10.69639 -10.60468 -10.31458 -10.24553 -10.21229 -9.96645 -9.95015 -9.54604 -9.07430 -8.97292 -8.65013 -8.55182 -6.75761 -5.85989 -3.29316 -0.14833 0.54403 1.60399 2.11340 2.72313 2.94276 3.15571 3.32968 3.40292 3.41650 3.56483 3.77116 4.22962 4.35802 4.41708 4.43880 4.47690 4.79259 4.97680 5.11910 5.31077 5.33010 5.45701 5.50700 5.51695 5.70071 5.73099 5.82578 5.91869 5.94229 5.97097 6.02263 6.05118 6.13881 6.22462 6.28687 6.43223 6.53213 6.63789 6.75427 6.82268 7.05808 7.43896 7.48457 7.61659 7.69776 7.88418 8.10875 8.31412 9.09249 9.72322 10.29645 11.22005 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018174 B = 0.002907 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.314268 B = 9628.595254 C =10296.406887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 C 0.135 3.865 4 N -0.695 5.695 5 C 0.551 3.449 6 O -0.528 6.528 7 C 0.096 3.904 8 C -0.084 4.084 9 C -0.069 4.069 10 C -0.084 4.084 11 C 0.276 3.724 12 N -0.541 5.541 13 C 0.248 3.752 14 N -0.342 5.342 15 N -0.275 5.275 16 C 0.161 3.839 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.069 0.931 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.109 3.891 27 C 0.047 3.953 28 O -0.383 6.383 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.420 0.580 35 H 0.176 0.824 36 H 0.160 0.840 37 H 0.162 0.838 38 H 0.230 0.770 39 H 0.097 0.903 40 H 0.030 0.970 41 H 0.255 0.745 42 H 0.026 0.974 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.683 14.132 17.444 22.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 C 0.012 3.988 4 N -0.351 5.351 5 C 0.334 3.666 6 O -0.405 6.405 7 C -0.016 4.016 8 C -0.108 4.108 9 C -0.095 4.095 10 C -0.106 4.106 11 C 0.023 3.977 12 N -0.271 5.271 13 C -0.052 4.052 14 N -0.174 5.174 15 N -0.053 5.053 16 C 0.034 3.966 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.017 4.017 27 C -0.031 4.031 28 O -0.302 6.302 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.263 0.737 35 H 0.193 0.807 36 H 0.178 0.822 37 H 0.180 0.820 38 H 0.246 0.754 39 H 0.115 0.885 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.195 13.897 16.655 21.926 hybrid contribution -0.937 -0.635 -0.611 1.286 sum -4.132 13.263 16.044 21.222 Atomic orbital electron populations 1.22213 0.95700 1.03317 1.00801 1.22534 0.93678 0.90310 0.89652 1.21511 1.00165 0.90373 0.86793 1.46378 1.51697 1.10775 1.26212 1.17525 0.81693 0.82866 0.84509 1.90862 1.38069 1.66408 1.45179 1.20743 0.96132 0.93113 0.91573 1.21530 0.99577 0.90740 0.98924 1.21288 0.94701 1.01296 0.92167 1.20533 0.99267 0.88929 1.01838 1.21866 0.94889 0.95634 0.85304 1.70856 1.24535 1.00815 1.30928 1.26205 0.94112 0.97045 0.87869 1.78125 1.22567 0.92207 1.24452 1.47935 1.31557 1.09646 1.16118 1.21288 0.97812 0.83990 0.93517 1.43991 1.68619 1.04919 1.13847 1.19184 1.21571 1.12161 0.85359 0.91357 1.25043 0.97290 1.00146 0.97093 1.70019 1.29127 1.36886 1.18524 0.86254 0.80666 0.78402 0.81349 1.21410 1.21683 1.20378 1.21602 0.97553 0.95219 0.87328 1.23030 0.98359 0.83042 0.98676 1.87821 1.72788 1.25894 1.43721 0.93716 0.92017 0.90709 0.90367 0.89620 0.73676 0.80719 0.82215 0.82025 0.75387 0.88508 0.95214 0.93445 0.95645 0.92011 0.93357 0.90211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 7.91 37.16 0.29 -2.68 16 2 C 0.08 1.54 0.76 -90.46 -0.07 1.47 16 3 C 0.14 2.44 4.82 -4.04 -0.02 2.42 16 4 N -0.70 -11.48 5.14 -61.45 -0.32 -11.79 16 5 C 0.55 8.61 7.78 -12.62 -0.10 8.51 16 6 O -0.53 -9.19 16.29 5.25 0.09 -9.10 16 7 C 0.10 1.20 6.80 -82.05 -0.56 0.64 16 8 C -0.08 -0.72 9.58 -39.15 -0.38 -1.09 16 9 C -0.07 -0.38 10.04 -39.67 -0.40 -0.78 16 10 C -0.08 -0.60 10.09 -39.32 -0.40 -0.99 16 11 C 0.28 3.10 7.88 -156.38 -1.23 1.87 16 12 N -0.54 -6.47 11.24 -13.99 -0.16 -6.63 16 13 C 0.25 2.78 12.98 -92.00 -1.19 1.59 16 14 N -0.34 -4.63 9.98 29.25 0.29 -4.33 16 15 N -0.28 -3.54 3.93 -8.81 -0.03 -3.58 16 16 C 0.16 3.78 4.12 -3.53 -0.01 3.76 16 17 N -0.59 -14.47 2.56 -171.83 -0.44 -14.91 16 18 C -0.25 -6.76 9.65 -15.06 -0.15 -6.90 16 19 H 0.07 1.79 7.88 -52.48 -0.41 1.37 16 20 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 21 N -0.90 -25.63 11.14 55.49 0.62 -25.01 16 22 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.11 2.27 6.73 -3.54 -0.02 2.25 16 27 C 0.05 0.84 6.60 37.31 0.25 1.08 16 28 O -0.38 -7.43 9.97 -35.23 -0.35 -7.79 16 29 H 0.04 0.74 6.87 -51.93 -0.36 0.38 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.46 6.11 -51.93 -0.32 1.14 16 32 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.42 6.86 4.15 -40.82 -0.17 6.69 16 35 H 0.18 1.25 7.59 -52.49 -0.40 0.85 16 36 H 0.16 0.24 8.06 -52.49 -0.42 -0.19 16 37 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.23 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.10 2.50 6.14 -51.93 -0.32 2.18 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 1.21 7.96 -51.93 -0.41 0.80 16 44 H 0.05 0.84 6.25 -51.93 -0.32 0.52 16 45 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -33.59 366.14 -9.54 -43.13 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.65 Total: 7.06 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: -4.07 Total: 11.15 kcal Atomic # 7 Polarization: -66.22 SS G_CDS: -0.04 Total: -66.26 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.27 Total: -16.89 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.59 -9.54 -43.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108056252.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.280 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds