Wall clock time and date at job start Sat Apr 11 2020 07:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.50892 * 2 1 4 4 N 1.46493 * 109.47074 * 60.00177 * 3 2 1 5 5 C 1.34777 * 119.99875 * 179.97438 * 4 3 2 6 6 O 1.21587 * 119.99873 * 359.97438 * 5 4 3 7 7 C 1.47586 * 120.00297 * 179.97438 * 5 4 3 8 8 C 1.41519 * 120.56312 * 359.97438 * 7 5 4 9 9 N 1.30906 * 120.16085 * 179.97438 * 8 7 5 10 10 C 1.34252 * 121.27428 * 0.02562 * 9 8 7 11 11 N 1.32428 * 131.62812 * 179.97438 * 10 9 8 12 12 C 1.33697 * 109.32410 * 179.97438 * 11 10 9 13 13 C 1.34904 * 108.65738 * 0.02562 * 12 11 10 14 14 N 1.37008 * 107.05648 * 0.26155 * 13 12 11 15 15 C 1.35974 * 132.55295 * 180.52377 * 14 13 12 16 16 C 1.53294 * 109.51414 * 239.89744 * 2 1 3 17 17 N 1.47157 * 108.38412 * 292.32708 * 16 2 1 18 18 C 1.36935 * 120.97814 * 129.44033 * 17 16 2 19 19 H 1.08007 * 119.99551 * 206.23991 * 18 17 16 20 20 C 1.38804 * 120.00349 * 26.24191 * 18 17 16 21 21 N 1.31624 * 119.99993 * 16.91440 * 20 18 17 22 22 Si 1.86798 * 120.00229 * 196.90757 * 20 18 17 23 23 H 1.48504 * 109.47109 * 90.00049 * 22 20 18 24 24 H 1.48502 * 109.47330 * 209.99773 * 22 20 18 25 25 H 1.48493 * 109.47076 * 330.00205 * 22 20 18 26 26 C 1.47154 * 118.03461 * 309.46925 * 17 16 2 27 27 C 1.53289 * 108.38677 * 50.53002 * 26 17 16 28 28 O 1.42952 * 109.26761 * 307.72691 * 27 26 17 29 29 H 1.09002 * 109.47233 * 59.99953 * 1 2 3 30 30 H 1.09002 * 109.46936 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47179 * 300.00153 * 1 2 3 32 32 H 1.08999 * 109.47144 * 299.99748 * 3 2 1 33 33 H 1.09002 * 109.46640 * 179.97438 * 3 2 1 34 34 H 0.96998 * 120.00728 * 359.97438 * 4 3 2 35 35 H 1.07997 * 119.92003 * 359.97438 * 8 7 5 36 36 H 1.07996 * 125.67038 * 179.97438 * 12 11 10 37 37 H 1.08000 * 126.47376 * 179.97438 * 13 12 11 38 38 H 1.07998 * 120.57829 * 359.27145 * 15 14 13 39 39 H 1.08999 * 109.68181 * 52.04922 * 16 2 1 40 40 H 1.08991 * 109.67940 * 172.56502 * 16 2 1 41 41 H 0.97001 * 120.00159 * 179.97438 * 21 20 18 42 42 H 1.08996 * 109.67721 * 170.26262 * 26 17 16 43 43 H 1.09002 * 109.67602 * 290.80520 * 26 17 16 44 44 H 1.08997 * 109.50959 * 67.62655 * 27 26 17 45 45 H 1.08999 * 109.51005 * 187.72414 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.5532 2.1331 1.1961 5 6 1.8800 3.4231 1.4097 6 8 2.5802 4.0132 0.6098 7 6 1.3882 4.1193 2.6144 8 6 0.5721 3.4442 3.5530 9 7 0.1406 4.0692 4.6192 10 6 0.4559 5.3537 4.8494 11 7 0.1392 6.1733 5.8402 12 6 0.6984 7.3680 5.6221 13 6 1.3899 7.3160 4.4650 14 7 1.2394 6.0499 3.9634 15 6 1.7167 5.4411 2.8452 16 6 2.0421 -0.7247 -1.2500 17 7 1.6971 -2.1505 -1.1339 18 6 1.0619 -2.8073 -2.1539 19 1 0.4493 -3.6710 -1.9411 20 6 1.2055 -2.3632 -3.4611 21 7 2.1870 -1.5439 -3.7738 22 14 0.0058 -2.9284 -4.7766 23 1 -1.1371 -1.9826 -4.8436 24 1 0.6948 -2.9662 -6.0916 25 1 -0.4940 -4.2857 -4.4405 26 6 2.0542 -2.8494 0.1109 27 6 1.5416 -2.0211 1.2945 28 8 2.0074 -0.6758 1.1658 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6780 1.9563 -0.8900 33 1 3.1310 1.4414 0.0005 34 1 0.9949 1.6622 1.8345 35 1 0.3047 2.4107 3.3893 36 1 0.6105 8.2313 6.2650 37 1 1.9518 8.1217 4.0161 38 1 2.3381 5.9827 2.1475 39 1 1.5698 -0.3038 -2.1377 40 1 3.1239 -0.6128 -1.3218 41 1 2.2876 -1.2338 -4.6874 42 1 1.5901 -3.8355 0.1243 43 1 3.1374 -2.9521 0.1763 44 1 0.4517 -2.0293 1.2997 45 1 1.9133 -2.4484 2.2259 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108073513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:30:12 Heat of formation + Delta-G solvation = 65.522858 kcal Electronic energy + Delta-G solvation = -30108.948892 eV Core-core repulsion = 25936.714531 eV Total energy + Delta-G solvation = -4172.234361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.43602 -40.25086 -39.07429 -38.06413 -35.34969 -34.88329 -34.42433 -32.34771 -31.34219 -31.15372 -29.67552 -28.03049 -26.81858 -25.97991 -24.88469 -24.20742 -23.30095 -22.29868 -21.49338 -20.91711 -19.07534 -18.86744 -18.20049 -17.47699 -16.98853 -16.78011 -16.21930 -15.92834 -15.44758 -15.25637 -14.90821 -14.58563 -14.52980 -14.32514 -14.13764 -13.94942 -13.86498 -13.58645 -13.13372 -13.00755 -12.78370 -12.61956 -12.23470 -11.98185 -11.67101 -11.27161 -11.09868 -11.06060 -10.89023 -10.74567 -10.53870 -10.38426 -10.29735 -10.11460 -9.98971 -9.63661 -9.61965 -9.16571 -9.04966 -8.63979 -8.60053 -6.81105 -5.90774 -3.34192 -0.10153 0.37663 1.79744 2.10311 2.75244 2.94288 3.11386 3.27355 3.30003 3.37587 3.38707 3.81486 3.95591 4.13984 4.26868 4.34641 4.38406 4.74787 4.82699 4.95075 5.05118 5.14681 5.27019 5.36481 5.43367 5.58005 5.60895 5.84765 5.85021 5.89768 5.95239 5.98504 6.03823 6.05751 6.18853 6.30463 6.42130 6.56506 6.67632 6.75697 6.99377 7.03392 7.32728 7.38601 7.47825 7.65406 7.78154 7.97492 8.26700 9.04685 9.67566 10.24290 11.17287 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022876 B = 0.002284 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.675836 B =12257.546324 C =12712.984836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.077 3.923 3 C 0.140 3.860 4 N -0.704 5.704 5 C 0.572 3.428 6 O -0.537 6.537 7 C -0.220 4.220 8 C 0.200 3.800 9 N -0.435 5.435 10 C 0.384 3.616 11 N -0.470 5.470 12 C 0.050 3.950 13 C -0.093 4.093 14 N -0.402 5.402 15 C 0.186 3.814 16 C 0.159 3.841 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.069 0.931 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.385 6.385 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.403 0.597 35 H 0.186 0.814 36 H 0.192 0.808 37 H 0.192 0.808 38 H 0.192 0.808 39 H 0.097 0.903 40 H 0.030 0.970 41 H 0.256 0.744 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.049 0.951 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.679 14.094 14.108 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 C 0.017 3.983 4 N -0.355 5.355 5 C 0.356 3.644 6 O -0.415 6.415 7 C -0.229 4.229 8 C 0.012 3.988 9 N -0.145 5.145 10 C 0.036 3.964 11 N -0.192 5.192 12 C -0.100 4.100 13 C -0.222 4.222 14 N -0.079 5.079 15 C 0.050 3.950 16 C 0.033 3.967 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.018 4.018 27 C -0.032 4.032 28 O -0.304 6.304 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.239 0.761 35 H 0.203 0.797 36 H 0.209 0.791 37 H 0.209 0.791 38 H 0.209 0.791 39 H 0.115 0.885 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.058 14.237 14.932 20.734 hybrid contribution 0.068 -0.056 -1.920 1.922 sum -1.990 14.181 13.011 19.348 Atomic orbital electron populations 1.22229 0.95615 1.03476 1.00772 1.22575 0.93651 0.90433 0.89798 1.21484 1.00226 0.90020 0.86615 1.45836 1.52646 1.10791 1.26186 1.17372 0.80632 0.82148 0.84237 1.90830 1.38095 1.66261 1.46301 1.20743 1.06859 0.94585 1.00673 1.23458 0.89091 0.99947 0.86347 1.67821 1.22476 1.03557 1.20671 1.22195 0.94907 0.90638 0.88673 1.70746 1.25295 1.01427 1.21753 1.22709 0.95832 0.95915 0.95583 1.22804 1.12230 0.86794 1.00395 1.44058 1.34271 1.12545 1.17065 1.22614 0.92880 0.92759 0.86725 1.21292 0.97887 0.84016 0.93532 1.43993 1.68587 1.04888 1.13907 1.19169 1.21632 1.12183 0.85366 0.91352 1.25038 0.97268 1.00101 0.97104 1.70010 1.29134 1.36844 1.18589 0.86274 0.80680 0.78481 0.81247 1.21349 1.21676 1.20413 1.21602 0.97595 0.95274 0.87303 1.23045 0.98389 0.82940 0.98808 1.87800 1.73086 1.25911 1.43615 0.91748 0.90629 0.93963 0.89521 0.90290 0.76087 0.79739 0.79140 0.79145 0.79114 0.88470 0.95173 0.93399 0.91990 0.95610 0.93277 0.90057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 7.92 37.16 0.29 -2.21 16 2 C 0.08 1.28 0.76 -90.46 -0.07 1.21 16 3 C 0.14 2.08 4.82 -4.04 -0.02 2.06 16 4 N -0.70 -8.38 5.11 -61.33 -0.31 -8.70 16 5 C 0.57 6.94 7.77 -12.45 -0.10 6.84 16 6 O -0.54 -8.17 16.38 5.29 0.09 -8.08 16 7 C -0.22 -2.19 5.89 -104.87 -0.62 -2.80 16 8 C 0.20 1.93 10.78 -16.70 -0.18 1.75 16 9 N -0.43 -5.36 10.45 -13.37 -0.14 -5.50 16 10 C 0.38 4.87 8.91 -322.26 -2.87 2.00 16 11 N -0.47 -6.03 11.31 -14.42 -0.16 -6.19 16 12 C 0.05 0.43 11.82 -17.92 -0.21 0.22 16 13 C -0.09 -0.69 11.76 -16.42 -0.19 -0.88 16 14 N -0.40 -3.99 2.94 -63.77 -0.19 -4.18 16 15 C 0.19 1.69 10.65 -15.75 -0.17 1.52 16 16 C 0.16 3.47 4.12 -3.53 -0.01 3.46 16 17 N -0.59 -13.63 2.57 -171.83 -0.44 -14.07 16 18 C -0.25 -6.50 9.65 -15.06 -0.15 -6.64 16 19 H 0.07 1.72 7.88 -52.48 -0.41 1.31 16 20 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 21 N -0.90 -24.80 11.14 55.49 0.62 -24.18 16 22 Si 0.90 20.68 29.59 -169.99 -5.03 15.65 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.11 2.10 6.74 -3.54 -0.02 2.08 16 27 C 0.05 0.73 6.60 37.31 0.25 0.98 16 28 O -0.38 -6.37 9.98 -35.23 -0.35 -6.72 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.30 6.12 -51.93 -0.32 0.98 16 31 H 0.04 0.51 6.86 -51.93 -0.36 0.16 16 32 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.40 4.01 5.28 -40.82 -0.22 3.80 16 35 H 0.19 1.23 6.48 -52.49 -0.34 0.89 16 36 H 0.19 0.88 8.06 -52.49 -0.42 0.45 16 37 H 0.19 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.19 1.34 7.68 -52.49 -0.40 0.93 16 39 H 0.10 2.35 6.13 -51.93 -0.32 2.03 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 42 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.75 6.25 -51.93 -0.32 0.43 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 367.82 15.07 5.54 5.54 Total: -1.00 -33.25 367.82 -10.15 -43.40 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.62 Total: 3.45 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -4.16 Total: 9.58 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -0.63 Total: -62.82 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.26 Total: -14.80 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.25 -10.15 -43.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108073513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.922 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds