Wall clock time and date at job start Sat Apr 11 2020 07:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47085 * 2 1 4 4 N 1.46902 * 109.47025 * 120.00029 * 2 1 3 5 5 C 1.46899 * 111.00199 * 149.92637 * 4 2 1 6 6 C 1.50699 * 109.47169 * 287.62971 * 5 4 2 7 7 H 1.08000 * 119.99884 * 4.66551 * 6 5 4 8 8 C 1.37875 * 119.99741 * 184.67477 * 6 5 4 9 9 N 1.31517 * 120.00210 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99725 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47292 * 89.99935 * 10 8 6 12 12 H 1.48506 * 109.46878 * 209.99813 * 10 8 6 13 13 H 1.48503 * 109.47252 * 329.99586 * 10 8 6 14 14 C 1.46907 * 110.99622 * 273.88231 * 4 2 1 15 15 N 1.46493 * 109.47318 * 71.45013 * 14 4 2 16 16 C 1.34524 * 126.74725 * 92.57099 * 15 14 4 17 17 N 1.30677 * 108.30051 * 180.24137 * 16 15 14 18 18 C 1.33987 * 109.77573 * 359.57459 * 17 16 15 19 19 C 1.48406 * 125.65145 * 180.20083 * 18 17 16 20 20 C 1.39340 * 120.11924 * 180.27608 * 19 18 17 21 21 C 1.37996 * 119.87857 * 179.97438 * 20 19 18 22 22 C 1.38346 * 120.12055 * 359.97438 * 21 20 19 23 23 C 1.38294 * 120.24283 * 359.97438 * 22 21 20 24 24 N 1.48017 * 119.94521 * 180.02562 * 23 22 21 25 25 O 1.21804 * 119.99467 * 359.97438 * 24 23 22 26 26 O 1.21793 * 120.00449 * 180.02562 * 24 23 22 27 27 C 1.38049 * 120.11917 * 359.76340 * 23 22 21 28 28 N 1.31496 * 108.69727 * 0.43112 * 18 17 16 29 29 H 1.08989 * 109.47204 * 306.31726 * 1 2 3 30 30 H 1.08999 * 109.46740 * 66.31938 * 1 2 3 31 31 H 1.09004 * 109.46934 * 186.31398 * 1 2 3 32 32 H 1.08993 * 109.47109 * 239.99661 * 2 1 3 33 33 H 1.08999 * 109.46993 * 172.10283 * 3 2 1 34 34 H 1.08998 * 109.46741 * 292.10069 * 3 2 1 35 35 H 1.09006 * 109.46821 * 52.10132 * 3 2 1 36 36 H 1.09000 * 109.46792 * 47.62734 * 5 4 2 37 37 H 1.09000 * 109.47299 * 167.62373 * 5 4 2 38 38 H 0.96997 * 119.99888 * 180.02562 * 9 8 6 39 39 H 1.08998 * 109.47206 * 311.44293 * 14 4 2 40 40 H 1.09010 * 109.46647 * 191.44920 * 14 4 2 41 41 H 1.08001 * 125.85034 * 359.97438 * 16 15 14 42 42 H 1.08003 * 120.06233 * 0.02562 * 20 19 18 43 43 H 1.08008 * 119.94258 * 180.02562 * 21 20 19 44 44 H 1.08006 * 119.87901 * 180.02562 * 22 21 20 45 45 H 1.07996 * 120.06480 * 180.25547 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3141 -1.3381 0.9431 6 6 3.1089 -2.5420 0.0603 7 1 2.1288 -2.7586 -0.3383 8 6 4.1725 -3.3670 -0.2385 9 7 5.3661 -3.1030 0.2466 10 14 3.9180 -4.8598 -1.3322 11 1 4.1370 -4.4775 -2.7503 12 1 4.8827 -5.9227 -0.9514 13 1 2.5320 -5.3660 -1.1644 14 6 2.1076 0.2289 2.3402 15 7 0.7584 0.5684 2.7989 16 6 0.0547 -0.0552 3.7610 17 7 -1.1034 0.5395 3.8732 18 6 -1.1766 1.5570 3.0045 19 6 -2.3342 2.4705 2.8377 20 6 -2.2885 3.4915 1.8907 21 6 -3.3680 4.3377 1.7394 22 6 -4.4944 4.1734 2.5255 23 6 -4.5457 3.1610 3.4663 24 7 -5.7544 2.9908 4.3035 25 8 -6.7026 3.7425 4.1638 26 8 -5.8005 2.0999 5.1326 27 6 -3.4736 2.3054 3.6222 28 7 -0.0545 1.6090 2.3208 29 1 -0.3633 0.6086 0.8279 30 1 -0.3633 0.4128 -0.9411 31 1 -0.3633 -1.0215 0.1130 32 1 1.8934 -0.5139 -0.8899 33 1 3.1208 1.4457 0.1412 34 1 1.7966 1.9139 -0.9522 35 1 1.5659 1.9955 0.8110 36 1 3.9799 -0.6324 0.4463 37 1 3.7572 -1.6518 1.8883 38 1 6.1143 -3.6832 0.0361 39 1 2.6267 1.1372 2.0345 40 1 2.6578 -0.2485 3.1513 41 1 0.3880 -0.9048 4.3386 42 1 -1.4101 3.6200 1.2756 43 1 -3.3338 5.1293 1.0053 44 1 -5.3373 4.8377 2.4036 45 1 -3.5161 1.5126 4.3543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739847659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:30:37 Heat of formation + Delta-G solvation = 127.507251 kcal Electronic energy + Delta-G solvation = -29775.377729 eV Core-core repulsion = 25605.831213 eV Total energy + Delta-G solvation = -4169.546516 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.33577 -43.17478 -40.38181 -39.42483 -37.69989 -35.14179 -34.66415 -33.37094 -32.82304 -32.64242 -31.44647 -29.03693 -28.08806 -27.65958 -26.45405 -24.80235 -24.02748 -23.85480 -22.72111 -22.02970 -20.71430 -20.03716 -19.72213 -18.63334 -18.57850 -17.93083 -17.52064 -17.16204 -16.80142 -16.55879 -16.45857 -15.97051 -15.75044 -15.43851 -14.92055 -14.81329 -14.49369 -14.29476 -14.13758 -13.86816 -13.45210 -13.32876 -13.13703 -12.88916 -12.88055 -12.74941 -12.67176 -12.57331 -12.36825 -12.31464 -12.29897 -12.21027 -11.90182 -11.76678 -11.54024 -11.38895 -11.09306 -10.66177 -10.61406 -10.51671 -9.87881 -9.18645 -8.23090 -6.31011 -1.26895 -0.46339 0.24920 0.31451 0.67872 1.22509 1.38821 1.40952 1.50973 1.75337 2.37809 2.46351 2.72901 3.07194 3.16907 3.26335 3.46154 3.60802 3.75036 3.87843 3.91427 4.02295 4.04977 4.19597 4.25535 4.35893 4.44269 4.54623 4.64995 4.71834 4.76304 4.87537 4.91407 4.99652 5.03006 5.07203 5.11725 5.14629 5.17531 5.19232 5.40425 5.43057 5.47927 5.63973 5.73999 5.99778 6.26300 6.45588 6.45849 6.82071 6.96046 7.37864 8.86416 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.002233 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.104588 B =12535.894914 C =12779.503374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.084 3.916 3 C -0.172 4.172 4 N -0.551 5.551 5 C 0.217 3.783 6 C -0.518 4.518 7 H 0.052 0.948 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.958 3.042 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.271 1.271 14 C 0.284 3.716 15 N -0.359 5.359 16 C 0.281 3.719 17 N -0.562 5.562 18 C 0.234 3.766 19 C -0.014 4.014 20 C -0.030 4.030 21 C -0.096 4.096 22 C -0.037 4.037 23 C -0.061 4.061 24 N 0.031 4.969 25 O -0.151 6.151 26 O -0.203 6.203 27 C -0.026 4.026 28 N -0.296 5.296 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.026 0.974 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.067 0.933 35 H 0.082 0.918 36 H -0.022 1.022 37 H 0.024 0.976 38 H 0.265 0.735 39 H 0.085 0.915 40 H 0.126 0.874 41 H 0.249 0.751 42 H 0.163 0.837 43 H 0.197 0.803 44 H 0.180 0.820 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.481 16.910 3.401 21.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 C -0.231 4.231 4 N -0.276 5.276 5 C 0.091 3.909 6 C -0.557 4.557 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.567 5.567 10 Si 0.784 3.216 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.196 1.196 14 C 0.073 3.927 15 N -0.149 5.149 16 C -0.015 4.015 17 N -0.289 5.289 18 C -0.044 4.044 19 C -0.017 4.017 20 C -0.050 4.050 21 C -0.114 4.114 22 C -0.057 4.057 23 C -0.145 4.145 24 N 0.547 4.453 25 O -0.372 6.372 26 O -0.410 6.410 27 C -0.047 4.047 28 N -0.126 5.126 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.100 0.900 36 H -0.004 1.004 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.143 0.857 41 H 0.265 0.735 42 H 0.180 0.820 43 H 0.214 0.786 44 H 0.197 0.803 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.977 16.841 2.823 21.447 hybrid contribution 0.783 -1.199 -0.306 1.465 sum -12.194 15.641 2.517 19.992 Atomic orbital electron populations 1.22186 0.94742 1.00646 1.02800 1.21535 0.95459 0.92935 0.92524 1.22393 1.00091 0.96978 1.03603 1.62065 1.30659 1.29908 1.05013 1.19335 0.83413 0.92276 0.95859 1.21321 0.94805 1.09872 1.29687 0.92928 1.25692 0.94867 1.00666 0.97587 1.70020 1.00663 1.39885 1.46128 0.85552 0.77963 0.79141 0.78976 1.20165 1.20681 1.19621 1.22503 0.77200 0.97401 0.95617 1.50608 1.15129 1.22049 1.27091 1.26602 0.86392 0.97591 0.90952 1.70530 1.20630 1.10675 1.27104 1.22191 0.93455 0.95329 0.93442 1.17317 0.89642 0.95888 0.98856 1.21985 1.00017 0.90045 0.92943 1.21603 0.89972 1.00323 0.99529 1.21596 1.00817 0.93444 0.89825 1.21075 0.87035 1.05101 1.01243 1.43871 1.02497 0.98926 1.00008 1.94485 1.28367 1.40947 1.73421 1.94583 1.88546 1.27165 1.30691 1.20885 0.89768 0.96761 0.97335 1.77760 1.03528 1.10000 1.21308 0.89881 0.92411 0.95459 0.92680 0.93933 0.91413 0.89966 1.00395 0.95817 0.92616 0.89750 0.85677 0.73485 0.81977 0.78562 0.80295 0.83445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 9.12 71.98 0.66 -4.04 16 2 C 0.08 2.93 2.66 44.92 0.12 3.05 16 3 C -0.17 -4.97 7.79 71.98 0.56 -4.41 16 4 N -0.55 -20.33 4.44 -887.79 -3.94 -24.27 16 5 C 0.22 9.98 4.66 85.56 0.40 10.37 16 6 C -0.52 -27.14 8.38 25.60 0.21 -26.93 16 7 H 0.05 2.81 7.73 -2.91 -0.02 2.79 16 8 C 0.01 0.57 5.46 84.65 0.46 1.04 16 9 N -0.93 -51.64 13.29 21.45 0.28 -51.36 16 10 Si 0.96 42.44 29.54 68.60 2.03 44.47 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 C 0.28 8.06 5.63 170.81 0.96 9.02 16 15 N -0.36 -9.51 2.98 -361.65 -1.08 -10.59 16 16 C 0.28 6.91 12.64 180.38 2.28 9.19 16 17 N -0.56 -15.34 10.82 -193.08 -2.09 -17.43 16 18 C 0.23 6.03 7.54 137.46 1.04 7.07 16 19 C -0.01 -0.28 5.88 -20.04 -0.12 -0.40 16 20 C -0.03 -0.40 9.68 22.48 0.22 -0.19 16 21 C -0.10 -0.76 10.03 22.24 0.22 -0.54 16 22 C -0.04 -0.43 9.55 22.31 0.21 -0.22 16 23 C -0.06 -1.20 6.85 36.34 0.25 -0.95 16 24 N 0.03 0.77 4.45 -46.54 -0.21 0.56 16 25 O -0.15 -3.59 18.44 18.88 0.35 -3.24 16 26 O -0.20 -5.80 18.44 18.90 0.35 -5.46 16 27 C -0.03 -0.56 9.19 22.48 0.21 -0.36 16 28 N -0.30 -7.70 7.44 -52.35 -0.39 -8.09 16 29 H 0.08 2.53 3.60 -2.40 -0.01 2.52 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.05 2.28 7.03 -2.39 -0.02 2.26 16 33 H 0.04 1.30 7.23 -2.39 -0.02 1.28 16 34 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.08 2.19 4.90 -2.38 -0.01 2.18 16 36 H -0.02 -1.07 7.55 -2.39 -0.02 -1.09 16 37 H 0.02 1.14 7.73 -2.39 -0.02 1.12 16 38 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 39 H 0.08 2.31 5.47 -2.39 -0.01 2.30 16 40 H 0.13 3.13 7.73 -2.38 -0.02 3.11 16 41 H 0.25 4.27 8.06 -2.91 -0.02 4.25 16 42 H 0.16 1.89 7.83 -2.91 -0.02 1.87 16 43 H 0.20 -0.07 8.06 -2.91 -0.02 -0.09 16 44 H 0.18 1.25 7.60 -2.91 -0.02 1.23 16 45 H 0.15 3.66 7.38 -2.91 -0.02 3.63 16 Total: -1.00 -66.67 376.85 4.02 -62.65 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.03 Total: 11.04 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 7.68 Total: 1.71 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -7.42 Total: -111.18 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.70 Total: -8.69 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -66.67 4.02 -62.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739847659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.160 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds