Wall clock time and date at job start Sat Apr 11 2020 07:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47219 * 2 1 4 4 O 1.42893 * 109.47747 * 120.00245 * 2 1 3 5 5 C 1.35872 * 117.00200 * 181.55976 * 4 2 1 6 6 C 1.38835 * 119.93836 * 174.32265 * 5 4 2 7 7 C 1.37907 * 120.06282 * 180.02562 * 6 5 4 8 8 C 1.39342 * 119.93762 * 359.97438 * 7 6 5 9 9 C 1.48431 * 120.06139 * 179.97438 * 8 7 6 10 10 N 1.34056 * 126.67792 * 0.02712 * 9 8 7 11 11 N 1.28983 * 107.27091 * 179.97438 * 10 9 8 12 12 N 1.28732 * 108.94671 * 0.02562 * 11 10 9 13 13 H 0.97000 * 125.34117 * 179.97438 * 12 11 10 14 14 N 1.28868 * 109.31804 * 0.02562 * 12 11 10 15 15 C 1.39341 * 119.87955 * 0.25845 * 8 7 6 16 16 C 1.37925 * 119.93535 * 359.50684 * 15 8 7 17 17 C 1.50708 * 109.47009 * 240.00536 * 2 1 3 18 18 O 1.21283 * 119.99898 * 240.00006 * 17 2 1 19 19 N 1.34781 * 119.99971 * 59.99478 * 17 2 1 20 20 C 1.46493 * 119.99773 * 180.02562 * 19 17 2 21 21 C 1.53001 * 109.47026 * 180.02562 * 20 19 17 22 22 C 1.50699 * 109.47335 * 179.97438 * 21 20 19 23 23 H 1.08005 * 119.99902 * 0.02562 * 22 21 20 24 24 C 1.37873 * 120.00084 * 180.02562 * 22 21 20 25 25 N 1.31514 * 120.00442 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00046 * 180.02562 * 24 22 21 27 27 H 1.48509 * 109.47301 * 89.99826 * 26 24 22 28 28 H 1.48499 * 109.47287 * 209.99761 * 26 24 22 29 29 H 1.48505 * 109.47290 * 330.00440 * 26 24 22 30 30 H 1.09001 * 109.46627 * 304.79397 * 1 2 3 31 31 H 1.08998 * 109.47287 * 64.79522 * 1 2 3 32 32 H 1.09000 * 109.46811 * 184.80110 * 1 2 3 33 33 H 1.08999 * 109.47133 * 172.56868 * 3 2 1 34 34 H 1.08996 * 109.46759 * 292.57157 * 3 2 1 35 35 H 1.08995 * 109.46905 * 52.57031 * 3 2 1 36 36 H 1.08003 * 119.96208 * 359.97438 * 6 5 4 37 37 H 1.07996 * 120.03173 * 180.02562 * 7 6 5 38 38 H 1.07997 * 120.03561 * 179.72480 * 15 8 7 39 39 H 1.07994 * 119.96814 * 180.23208 * 16 15 8 40 40 H 0.97006 * 119.99767 * 0.02562 * 19 17 2 41 41 H 1.09000 * 109.47323 * 299.99872 * 20 19 17 42 42 H 1.08999 * 109.47374 * 60.00367 * 20 19 17 43 43 H 1.09000 * 109.46906 * 300.00055 * 21 20 19 44 44 H 1.09002 * 109.47301 * 59.99914 * 21 20 19 45 45 H 0.96990 * 120.00737 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0065 -0.6736 1.1666 5 6 3.3530 -0.7341 1.3373 6 6 3.8801 -1.2688 2.5052 7 6 5.2465 -1.3309 2.6814 8 6 6.0983 -0.8570 1.6856 9 6 7.5693 -0.9221 1.8726 10 7 8.2202 -1.4074 2.9393 11 7 9.4828 -1.2818 2.7073 12 7 9.6434 -0.7421 1.5497 13 1 10.4984 -0.5389 1.1390 14 7 8.4900 -0.5131 1.0224 15 6 5.5665 -0.3165 0.5166 16 6 4.1993 -0.2613 0.3436 17 6 2.0323 -0.7103 -1.2306 18 8 2.7296 -1.6964 -1.1194 19 7 1.7066 -0.2498 -2.4547 20 6 2.1945 -0.9406 -3.6509 21 6 1.6850 -0.2189 -4.9000 22 6 2.1873 -0.9291 -6.1306 23 1 2.8076 -1.8078 -6.0316 24 6 1.8551 -0.4574 -7.3828 25 7 1.1002 0.6128 -7.5034 26 14 2.4772 -1.3382 -8.9081 27 1 1.4979 -2.3787 -9.3128 28 1 2.6435 -0.3589 -10.0120 29 1 3.7845 -1.9773 -8.6121 30 1 -0.3632 0.5864 0.8440 31 1 -0.3634 0.4376 -0.9298 32 1 -0.3633 -1.0241 0.0860 33 1 3.1219 1.4454 0.1329 34 1 1.7892 1.9165 -0.9489 35 1 1.5723 1.9933 0.8160 36 1 3.2193 -1.6355 3.2768 37 1 5.6559 -1.7473 3.5898 38 1 6.2244 0.0556 -0.2549 39 1 3.7867 0.1541 -0.5638 40 1 1.1492 0.5391 -2.5436 41 1 3.2845 -0.9410 -3.6511 42 1 1.8307 -1.9681 -3.6508 43 1 0.5950 -0.2181 -4.9000 44 1 2.0490 0.8085 -4.9000 45 1 0.8662 0.9445 -8.3843 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824171906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:30:58 Heat of formation + Delta-G solvation = 81.524262 kcal Electronic energy + Delta-G solvation = -29617.589956 eV Core-core repulsion = 25446.049468 eV Total energy + Delta-G solvation = -4171.540488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.59020 -41.39919 -38.97358 -37.57082 -35.06789 -34.51461 -33.99540 -33.32533 -32.64949 -31.18400 -29.92735 -29.47240 -27.65099 -25.19494 -24.88290 -24.54660 -23.47406 -22.33404 -21.76229 -21.04216 -20.01448 -19.38296 -18.31584 -17.28408 -16.90195 -16.70243 -16.40687 -16.12477 -15.40085 -15.09575 -14.69957 -14.51864 -14.31083 -14.07272 -14.01462 -13.58740 -13.55490 -13.03847 -13.00077 -12.61851 -12.51745 -12.44715 -12.40537 -12.34334 -12.21521 -11.95577 -11.51519 -11.35759 -11.28050 -11.24811 -11.06520 -10.84124 -10.70483 -10.66576 -10.40405 -9.85911 -9.52143 -9.26493 -9.04951 -8.65751 -8.44984 -8.03830 -6.15449 -4.18492 0.66456 1.06167 1.30726 2.07719 2.26226 2.67180 2.92917 3.25455 3.31063 3.33299 3.39495 3.57976 3.74216 4.06315 4.36031 4.47552 4.55878 4.71118 4.80619 4.84964 5.08069 5.17168 5.21911 5.26225 5.27778 5.31293 5.38367 5.46724 5.49109 5.60214 5.82362 5.87878 5.92707 6.09757 6.18767 6.20974 6.24087 6.30325 6.36121 6.55082 6.63078 6.73961 7.21203 7.42632 7.52416 7.78680 7.82890 7.99188 8.19238 8.41177 8.87219 9.46852 10.96051 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.010115 B = 0.002605 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.443271 B =10744.280977 C =12984.160727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.094 3.906 3 C -0.198 4.198 4 O -0.284 6.284 5 C 0.169 3.831 6 C -0.158 4.158 7 C -0.040 4.040 8 C -0.067 4.067 9 C 0.233 3.767 10 N -0.274 5.274 11 N -0.054 5.054 12 N -0.230 5.230 13 H 0.474 0.526 14 N -0.298 5.298 15 C -0.041 4.041 16 C -0.185 4.185 17 C 0.481 3.519 18 O -0.526 6.526 19 N -0.714 5.714 20 C 0.121 3.879 21 C 0.013 3.987 22 C -0.522 4.522 23 H 0.059 0.941 24 C 0.060 3.940 25 N -0.894 5.894 26 Si 0.896 3.104 27 H -0.279 1.279 28 H -0.286 1.286 29 H -0.272 1.272 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.139 0.861 40 H 0.398 0.602 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.025 3.159 20.781 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.052 3.948 3 C -0.255 4.255 4 O -0.196 6.196 5 C 0.123 3.877 6 C -0.176 4.176 7 C -0.060 4.060 8 C -0.071 4.071 9 C -0.046 4.046 10 N -0.147 5.147 11 N -0.049 5.049 12 N -0.076 5.076 13 H 0.328 0.672 14 N -0.150 5.150 15 C -0.062 4.062 16 C -0.204 4.204 17 C 0.265 3.735 18 O -0.403 6.403 19 N -0.366 5.366 20 C -0.001 4.001 21 C -0.024 4.024 22 C -0.561 4.561 23 H 0.077 0.923 24 C -0.142 4.142 25 N -0.532 5.532 26 Si 0.724 3.276 27 H -0.205 1.205 28 H -0.211 1.211 29 H -0.197 1.197 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.151 0.849 39 H 0.156 0.844 40 H 0.232 0.768 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.857 2.330 21.161 22.693 hybrid contribution 0.296 0.216 -1.856 1.892 sum 8.154 2.546 19.305 21.110 Atomic orbital electron populations 1.21816 0.89104 1.04435 1.04032 1.21886 0.96958 0.92088 0.83852 1.22863 1.04235 0.93735 1.04649 1.86162 1.19300 1.72595 1.41565 1.19026 0.82399 0.92906 0.93418 1.20257 0.94695 1.05695 0.96988 1.20854 0.91667 0.95577 0.97920 1.17051 0.84377 1.08215 0.97465 1.23686 0.95916 0.97592 0.87389 1.76053 0.96369 1.19378 1.22929 1.78865 1.13243 1.11734 1.01054 1.47706 1.09287 1.38900 1.11683 0.67162 1.74980 0.91304 1.23348 1.25340 1.20918 0.94633 0.95162 0.95440 1.21464 0.93617 1.05715 0.99560 1.20903 0.81579 0.85643 0.85389 1.90796 1.37251 1.25876 1.86334 1.46392 1.52480 1.31694 1.05993 1.21789 0.98642 0.96399 0.83291 1.19323 0.96974 0.96031 0.90089 1.21028 1.32118 1.12566 0.90398 0.92264 1.24983 0.94972 0.94980 0.99266 1.69939 1.36659 1.22811 1.23838 0.86519 0.79393 0.79377 0.82322 1.20523 1.21134 1.19718 0.90276 0.89511 0.90656 0.89595 0.89843 0.90099 0.84485 0.84236 0.84910 0.84390 0.76791 0.92382 0.92348 0.95893 0.95902 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.78 37.16 0.33 -0.96 16 2 C 0.09 1.13 0.96 -91.76 -0.09 1.04 16 3 C -0.20 -1.90 8.09 37.16 0.30 -1.60 16 4 O -0.28 -3.84 9.62 -39.25 -0.38 -4.22 16 5 C 0.17 2.31 5.56 -39.14 -0.22 2.10 16 6 C -0.16 -1.88 9.97 -39.48 -0.39 -2.27 16 7 C -0.04 -0.46 9.70 -39.29 -0.38 -0.85 16 8 C -0.07 -0.86 5.88 -104.88 -0.62 -1.48 16 9 C 0.23 2.97 7.93 -156.30 -1.24 1.73 16 10 N -0.27 -3.47 12.23 32.15 0.39 -3.07 16 11 N -0.05 -0.58 13.47 60.35 0.81 0.24 16 12 N -0.23 -1.94 7.90 60.35 0.48 -1.46 16 13 H 0.47 1.65 8.96 -340.37 -3.05 -1.40 16 14 N -0.30 -3.40 12.08 32.17 0.39 -3.01 16 15 C -0.04 -0.55 9.69 -39.29 -0.38 -0.93 16 16 C -0.19 -2.59 5.57 -39.48 -0.22 -2.81 16 17 C 0.48 7.57 4.59 -10.98 -0.05 7.52 16 18 O -0.53 -10.31 13.90 -14.35 -0.20 -10.50 16 19 N -0.71 -11.29 5.26 -60.29 -0.32 -11.60 16 20 C 0.12 2.42 5.61 -4.04 -0.02 2.40 16 21 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 22 C -0.52 -14.07 9.11 -34.44 -0.31 -14.39 16 23 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 24 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 25 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 26 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 29 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.71 7.43 -51.93 -0.39 0.33 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 0.90 4.68 -51.93 -0.24 0.66 16 34 H 0.08 0.71 7.37 -51.93 -0.38 0.33 16 35 H 0.08 0.63 8.13 -51.93 -0.42 0.21 16 36 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 37 H 0.14 1.38 7.88 -52.49 -0.41 0.96 16 38 H 0.13 1.66 7.88 -52.49 -0.41 1.25 16 39 H 0.14 2.00 3.76 -52.49 -0.20 1.80 16 40 H 0.40 5.28 7.18 -40.82 -0.29 4.98 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 376.82 15.07 5.68 5.68 Total: -1.00 -34.06 376.82 -9.27 -43.33 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.30 Total: 2.14 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -3.54 Total: -8.80 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 2.49 Total: -43.60 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.58 Total: -14.72 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.06 -9.27 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824171906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.857 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds