Wall clock time and date at job start Sat Apr 11 2020 07:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47388 * 0.64293 * 3 2 1 5 5 N 1.46509 * 109.47107 * 240.64777 * 3 2 1 6 6 C 1.34774 * 119.99807 * 84.72407 * 5 3 2 7 7 O 1.21584 * 120.00140 * 355.19079 * 6 5 3 8 8 N 1.34777 * 119.99513 * 175.19442 * 6 5 3 9 9 C 1.47082 * 120.87935 * 184.71787 * 8 6 5 10 10 C 1.53693 * 108.27774 * 128.74970 * 9 8 6 11 11 N 1.46902 * 109.25351 * 54.08172 * 10 9 8 12 12 C 1.46907 * 110.99965 * 172.60497 * 11 10 9 13 13 C 1.50703 * 109.47048 * 294.30394 * 12 11 10 14 14 H 1.07997 * 120.00040 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99730 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00073 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99801 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47108 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47235 * 120.00656 * 17 15 13 20 20 H 1.48506 * 109.47143 * 240.00115 * 17 15 13 21 21 C 1.46893 * 111.27197 * 296.75343 * 11 10 9 22 22 C 1.47073 * 120.88291 * 4.99131 * 8 6 5 23 23 C 1.50696 * 109.47275 * 120.64575 * 3 2 1 24 24 C 1.38249 * 119.97038 * 79.72134 * 23 3 2 25 25 C 1.38201 * 120.02451 * 179.77113 * 24 23 3 26 26 C 1.38459 * 119.97280 * 0.50334 * 25 24 23 27 27 F 1.35102 * 120.02795 * 179.76452 * 26 25 24 28 28 C 1.38462 * 119.95026 * 359.75280 * 26 25 24 29 29 C 1.38200 * 119.97321 * 359.97438 * 28 26 25 30 30 H 4.18734 * 15.04046 * 0.02562 * 4 2 1 31 31 H 0.96996 * 119.99493 * 265.00650 * 5 3 2 32 32 H 1.08998 * 109.62540 * 248.52006 * 9 8 6 33 33 H 1.09000 * 109.62874 * 9.10361 * 9 8 6 34 34 H 1.09000 * 109.65181 * 294.08080 * 10 9 8 35 35 H 1.09003 * 109.44534 * 173.95853 * 10 9 8 36 36 H 1.08998 * 109.46929 * 54.30492 * 12 11 10 37 37 H 1.08995 * 109.47360 * 174.30423 * 12 11 10 38 38 H 0.97000 * 120.00380 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.49798 * 303.14495 * 21 11 10 40 40 H 1.08998 * 109.49542 * 183.06044 * 21 11 10 41 41 H 1.08998 * 109.63441 * 350.90223 * 22 8 6 42 42 H 1.08997 * 109.63028 * 111.48100 * 22 8 6 43 43 H 1.07998 * 119.98942 * 0.02562 * 24 23 3 44 44 H 1.07998 * 120.01369 * 180.25793 * 25 24 23 45 45 H 1.07996 * 120.01694 * 179.97438 * 28 26 25 46 46 H 1.07998 * 119.98968 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0268 -0.0115 5 7 3.1340 0.6780 1.2040 6 6 3.2578 -0.0061 2.3586 7 8 2.8827 -1.1608 2.4243 8 7 3.7972 0.5899 3.4404 9 6 4.0363 -0.1669 4.6787 10 6 5.4933 0.0630 5.1104 11 7 5.7481 1.5065 5.2064 12 6 7.0729 1.7701 5.7838 13 6 7.1003 1.2977 7.2146 14 1 6.2214 0.8472 7.6515 15 6 8.2476 1.4407 7.9659 16 7 9.3177 1.9897 7.4341 17 14 8.2818 0.8545 9.7392 18 1 6.9607 0.2774 10.0953 19 1 9.3333 -0.1820 9.8978 20 1 8.5788 2.0018 10.6342 21 6 5.6038 2.1612 3.8994 22 6 4.1569 2.0158 3.4160 23 6 3.1480 0.7251 -1.2223 24 6 3.1761 2.1071 -1.2431 25 6 3.6408 2.7726 -2.3617 26 6 4.0684 2.0547 -3.4658 27 9 4.5183 2.7042 -4.5617 28 6 4.0348 0.6707 -3.4458 29 6 3.5751 0.0073 -2.3239 30 1 -1.0500 -0.0011 -0.0005 31 1 3.3642 1.6196 1.1710 32 1 3.3604 0.1839 5.4585 33 1 3.8702 -1.2287 4.4966 34 1 6.1672 -0.3772 4.3754 35 1 5.6614 -0.4015 6.0821 36 1 7.8316 1.2372 5.2106 37 1 7.2775 2.8401 5.7505 38 1 10.1247 2.0906 7.9627 39 1 6.2761 1.6920 3.1812 40 1 5.8514 3.2186 3.9929 41 1 4.0705 2.3979 2.3988 42 1 3.4924 2.5724 4.0768 43 1 2.8388 2.6669 -0.3834 44 1 3.6666 3.8521 -2.3762 45 1 4.3677 0.1097 -4.3065 46 1 3.5491 -1.0723 -2.3079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868636296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:12 Heat of formation + Delta-G solvation = 32.622166 kcal Electronic energy + Delta-G solvation = -29287.951525 eV Core-core repulsion = 25094.370521 eV Total energy + Delta-G solvation = -4193.581003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.28648 -40.65637 -39.55365 -37.74130 -35.79035 -34.47821 -32.80875 -32.30584 -31.64953 -31.23449 -30.52888 -28.29065 -26.55561 -25.38497 -23.67023 -23.22540 -22.30186 -22.10650 -20.85403 -19.51863 -18.80345 -18.31585 -17.84245 -16.99447 -16.41661 -16.23882 -15.98546 -15.80310 -15.56413 -15.11760 -14.68106 -14.64379 -14.44793 -14.29256 -14.02951 -13.85246 -13.75975 -13.52307 -13.39780 -12.99440 -12.60044 -12.51316 -12.26299 -12.02607 -11.50710 -11.32998 -11.18780 -10.87839 -10.85442 -10.75344 -10.61802 -10.55139 -10.46371 -10.05765 -9.88640 -9.59546 -9.51784 -9.28181 -9.10320 -8.51274 -8.40609 -7.35582 -6.08090 -4.09820 0.58434 0.75070 2.19956 2.59879 2.94914 3.07756 3.23568 3.28412 3.36232 3.40742 3.80258 3.81242 4.13430 4.22798 4.34315 4.37726 4.46426 4.73079 4.74583 4.83340 5.11408 5.17413 5.26355 5.32480 5.38990 5.41636 5.44618 5.61008 5.64613 5.68021 5.72975 5.78628 5.86076 5.93552 6.00398 6.16016 6.24670 6.36914 6.38219 6.52839 6.62157 6.94833 7.19365 7.25807 7.39334 7.72441 7.88517 7.98649 8.09607 8.45272 8.56530 8.97861 9.54998 11.02800 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.002256 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.519221 B =12407.873092 C =13677.251368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.195 4.195 3 C 0.321 3.679 4 H 0.118 0.882 5 N -0.742 5.742 6 C 0.710 3.290 7 O -0.589 6.589 8 N -0.622 5.622 9 C 0.133 3.867 10 C 0.050 3.950 11 N -0.535 5.535 12 C 0.194 3.806 13 C -0.509 4.509 14 H 0.065 0.935 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.041 3.959 22 C 0.118 3.882 23 C -0.100 4.100 24 C -0.077 4.077 25 C -0.149 4.149 26 C 0.103 3.897 27 F -0.138 7.138 28 C -0.150 4.150 29 C -0.070 4.070 30 H 0.218 0.782 31 H 0.397 0.603 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.025 0.975 35 H 0.098 0.902 36 H -0.009 1.009 37 H 0.031 0.969 38 H 0.261 0.739 39 H 0.027 0.973 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.132 0.868 44 H 0.140 0.860 45 H 0.140 0.860 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.337 0.206 -21.455 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.196 4.196 3 C 0.216 3.784 4 H 0.136 0.864 5 N -0.401 5.401 6 C 0.412 3.588 7 O -0.467 6.467 8 N -0.359 5.359 9 C 0.011 3.989 10 C -0.079 4.079 11 N -0.260 5.260 12 C 0.069 3.931 13 C -0.547 4.547 14 H 0.083 0.917 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.089 4.089 22 C -0.006 4.006 23 C -0.101 4.101 24 C -0.096 4.096 25 C -0.167 4.167 26 C 0.084 3.916 27 F -0.117 7.117 28 C -0.169 4.169 29 C -0.089 4.089 30 H 0.235 0.765 31 H 0.236 0.764 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.043 0.957 35 H 0.116 0.884 36 H 0.009 0.991 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.045 0.955 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.150 0.850 44 H 0.158 0.842 45 H 0.158 0.842 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.694 -0.372 -21.052 25.676 hybrid contribution 0.832 0.183 0.194 0.874 sum -13.861 -0.189 -20.859 25.045 Atomic orbital electron populations 1.24913 0.95815 1.00008 0.98898 1.23164 0.94248 1.00957 1.01268 1.16138 0.83371 0.97561 0.81365 0.86421 1.45368 1.72086 1.14005 1.08595 1.15775 0.78468 0.84537 0.80012 1.90906 1.55658 1.16530 1.83626 1.47404 1.64838 1.10936 1.12706 1.21865 0.97075 0.96491 0.83516 1.22461 0.93437 0.90291 1.01683 1.62079 1.34836 1.09379 1.19716 1.19729 0.82013 0.96869 0.94489 1.21179 0.97865 1.39536 0.96149 0.91696 1.24994 0.95507 0.95408 0.98690 1.69962 1.02583 1.44383 1.36830 0.86440 0.78069 0.78387 0.84526 1.19587 1.21107 1.21010 1.22378 0.94058 1.00389 0.92088 1.21785 0.97490 0.81223 1.00078 1.19748 1.01051 0.93920 0.95357 1.20801 0.97504 0.93464 0.97787 1.21142 1.01724 1.01118 0.92750 1.17778 0.99176 0.90628 0.84062 1.91520 1.86702 1.81619 1.51854 1.21154 1.02957 0.92497 1.00243 1.20878 0.95943 1.00619 0.91425 0.76517 0.76413 0.91041 0.89277 0.95667 0.88414 0.99103 0.95067 0.92924 0.95450 0.90070 0.91465 0.90474 0.85002 0.84245 0.84243 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 19.25 29.55 0.57 -1.17 16 2 C -0.19 -2.16 12.80 -37.12 -0.48 -2.63 16 3 C 0.32 3.33 2.58 -71.87 -0.19 3.15 16 4 H 0.12 1.31 7.52 -51.93 -0.39 0.92 16 5 N -0.74 -8.41 4.91 -62.60 -0.31 -8.72 16 6 C 0.71 10.70 8.24 -86.92 -0.72 9.98 16 7 O -0.59 -10.81 15.53 5.29 0.08 -10.72 16 8 N -0.62 -9.25 3.00 -177.91 -0.53 -9.78 16 9 C 0.13 2.15 6.61 -3.36 -0.02 2.13 16 10 C 0.05 0.95 5.47 -3.46 -0.02 0.93 16 11 N -0.53 -10.80 4.62 -235.47 -1.09 -11.89 16 12 C 0.19 4.83 4.72 -4.97 -0.02 4.81 16 13 C -0.51 -13.78 8.41 -34.44 -0.29 -14.07 16 14 H 0.06 1.74 7.13 -52.49 -0.37 1.36 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 17 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 22 C 0.12 1.51 6.59 -3.60 -0.02 1.49 16 23 C -0.10 -0.84 4.92 -104.62 -0.51 -1.36 16 24 C -0.08 -0.58 9.03 -39.59 -0.36 -0.94 16 25 C -0.15 -1.11 10.03 -39.51 -0.40 -1.50 16 26 C 0.10 0.86 7.30 -39.42 -0.29 0.57 16 27 F -0.14 -1.28 17.27 2.25 0.04 -1.24 16 28 C -0.15 -1.09 10.03 -39.51 -0.40 -1.49 16 29 C -0.07 -0.52 9.67 -39.59 -0.38 -0.90 16 30 H 0.22 1.35 7.80 -54.09 -0.42 0.93 16 31 H 0.40 3.63 4.38 -40.82 -0.18 3.45 16 32 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.45 7.09 -51.93 -0.37 1.08 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 1.96 6.67 -51.93 -0.35 1.62 16 36 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 37 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 1.25 7.99 -51.93 -0.41 0.83 16 41 H 0.07 0.64 5.63 -51.93 -0.29 0.34 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.13 0.80 6.93 -52.49 -0.36 0.43 16 44 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 45 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.14 0.77 8.04 -52.49 -0.42 0.35 16 LS Contribution 388.47 15.07 5.85 5.85 Total: -1.00 -33.13 388.47 -9.96 -43.08 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.08 Total: 1.58 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -3.64 Total: 1.07 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -1.19 Total: -55.79 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.13 -9.96 -43.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868636296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.706 kcal (2) G-P(sol) polarization free energy of solvation -33.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds