Wall clock time and date at job start Sat Apr 11 2020 07:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47388 * 0.64293 * 3 2 1 5 5 N 1.46509 * 109.47107 * 240.64777 * 3 2 1 6 6 C 1.34774 * 119.99807 * 84.72407 * 5 3 2 7 7 O 1.21584 * 120.00140 * 355.19079 * 6 5 3 8 8 N 1.34777 * 119.99513 * 175.19442 * 6 5 3 9 9 C 1.47082 * 120.87935 * 184.71787 * 8 6 5 10 10 C 1.53693 * 108.27774 * 128.74970 * 9 8 6 11 11 N 1.46902 * 109.25351 * 54.08172 * 10 9 8 12 12 C 1.46907 * 110.99965 * 172.60497 * 11 10 9 13 13 C 1.50703 * 109.47048 * 294.30394 * 12 11 10 14 14 H 1.07997 * 120.00040 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99730 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00073 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99801 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47108 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47235 * 120.00656 * 17 15 13 20 20 H 1.48506 * 109.47143 * 240.00115 * 17 15 13 21 21 C 1.46893 * 111.27197 * 296.75343 * 11 10 9 22 22 C 1.47073 * 120.88291 * 4.99131 * 8 6 5 23 23 C 1.50696 * 109.47275 * 120.64575 * 3 2 1 24 24 C 1.38249 * 119.97038 * 79.72134 * 23 3 2 25 25 C 1.38201 * 120.02451 * 179.77113 * 24 23 3 26 26 C 1.38459 * 119.97280 * 0.50334 * 25 24 23 27 27 F 1.35102 * 120.02795 * 179.76452 * 26 25 24 28 28 C 1.38462 * 119.95026 * 359.75280 * 26 25 24 29 29 C 1.38200 * 119.97321 * 359.97438 * 28 26 25 30 30 H 4.18734 * 15.04046 * 0.02562 * 4 2 1 31 31 H 0.96996 * 119.99493 * 265.00650 * 5 3 2 32 32 H 1.08998 * 109.62540 * 248.52006 * 9 8 6 33 33 H 1.09000 * 109.62874 * 9.10361 * 9 8 6 34 34 H 1.09000 * 109.65181 * 294.08080 * 10 9 8 35 35 H 1.09003 * 109.44534 * 173.95853 * 10 9 8 36 36 H 1.08998 * 109.46929 * 54.30492 * 12 11 10 37 37 H 1.08995 * 109.47360 * 174.30423 * 12 11 10 38 38 H 0.97000 * 120.00380 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.49798 * 303.14495 * 21 11 10 40 40 H 1.08998 * 109.49542 * 183.06044 * 21 11 10 41 41 H 1.08998 * 109.63441 * 350.90223 * 22 8 6 42 42 H 1.08997 * 109.63028 * 111.48100 * 22 8 6 43 43 H 1.07998 * 119.98942 * 0.02562 * 24 23 3 44 44 H 1.07998 * 120.01369 * 180.25793 * 25 24 23 45 45 H 1.07996 * 120.01694 * 179.97438 * 28 26 25 46 46 H 1.07998 * 119.98968 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -1.0268 -0.0115 5 7 3.1340 0.6780 1.2040 6 6 3.2578 -0.0061 2.3586 7 8 2.8827 -1.1608 2.4243 8 7 3.7972 0.5899 3.4404 9 6 4.0363 -0.1669 4.6787 10 6 5.4933 0.0630 5.1104 11 7 5.7481 1.5065 5.2064 12 6 7.0729 1.7701 5.7838 13 6 7.1003 1.2977 7.2146 14 1 6.2214 0.8472 7.6515 15 6 8.2476 1.4407 7.9659 16 7 9.3177 1.9897 7.4341 17 14 8.2818 0.8545 9.7392 18 1 6.9607 0.2774 10.0953 19 1 9.3333 -0.1820 9.8978 20 1 8.5788 2.0018 10.6342 21 6 5.6038 2.1612 3.8994 22 6 4.1569 2.0158 3.4160 23 6 3.1480 0.7251 -1.2223 24 6 3.1761 2.1071 -1.2431 25 6 3.6408 2.7726 -2.3617 26 6 4.0684 2.0547 -3.4658 27 9 4.5183 2.7042 -4.5617 28 6 4.0348 0.6707 -3.4458 29 6 3.5751 0.0073 -2.3239 30 1 -1.0500 -0.0011 -0.0005 31 1 3.3642 1.6196 1.1710 32 1 3.3604 0.1839 5.4585 33 1 3.8702 -1.2287 4.4966 34 1 6.1672 -0.3772 4.3754 35 1 5.6614 -0.4015 6.0821 36 1 7.8316 1.2372 5.2106 37 1 7.2775 2.8401 5.7505 38 1 10.1247 2.0906 7.9627 39 1 6.2761 1.6920 3.1812 40 1 5.8514 3.2186 3.9929 41 1 4.0705 2.3979 2.3988 42 1 3.4924 2.5724 4.0768 43 1 2.8388 2.6669 -0.3834 44 1 3.6666 3.8521 -2.3762 45 1 4.3677 0.1097 -4.3065 46 1 3.5491 -1.0723 -2.3079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868636296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:11 Heat of formation + Delta-G solvation = 12.372031 kcal Electronic energy + Delta-G solvation = -29288.829636 eV Core-core repulsion = 25094.370521 eV Total energy + Delta-G solvation = -4194.459115 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.93619 -41.70646 -40.34597 -39.09146 -36.72253 -36.00927 -34.45389 -33.53243 -32.22157 -32.17309 -31.60506 -29.92885 -27.65318 -26.84374 -24.62522 -24.27793 -23.85029 -22.86397 -22.24512 -20.68040 -19.71474 -19.19185 -18.63624 -18.47165 -17.80335 -17.04878 -16.92105 -16.67487 -16.60132 -16.46841 -16.03198 -15.88162 -15.43549 -15.39045 -15.31944 -15.15974 -14.71514 -14.51723 -14.35409 -14.04157 -14.02523 -13.51287 -13.32726 -13.16146 -13.08527 -12.73898 -12.59394 -12.37052 -12.32186 -12.15509 -12.05189 -11.76985 -11.64242 -11.33847 -11.24260 -11.15785 -10.61905 -10.56827 -10.13614 -9.72508 -9.68429 -9.03783 -8.20287 -6.29687 -0.03059 0.20438 1.27157 1.42285 1.43489 1.56483 1.83771 1.95369 2.09007 2.41236 2.50928 2.84974 3.12388 3.21148 3.23641 3.43299 3.66396 3.69452 3.91848 3.93358 4.05109 4.10824 4.17627 4.25487 4.26555 4.43684 4.47319 4.58701 4.71908 4.84341 4.85517 4.89136 4.95942 5.02239 5.03167 5.08975 5.13931 5.17601 5.21087 5.23204 5.40780 5.45462 5.64873 5.80258 5.84416 6.04414 6.26155 6.59085 6.64492 6.82459 6.86495 7.40199 7.41948 8.91011 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015144 B = 0.002256 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.519221 B =12407.873092 C =13677.251368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.232 4.232 3 C 0.323 3.677 4 H 0.105 0.895 5 N -0.727 5.727 6 C 0.709 3.291 7 O -0.624 6.624 8 N -0.626 5.626 9 C 0.146 3.854 10 C 0.057 3.943 11 N -0.538 5.538 12 C 0.209 3.791 13 C -0.521 4.521 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.282 1.282 20 H -0.279 1.279 21 C 0.038 3.962 22 C 0.126 3.874 23 C -0.106 4.106 24 C -0.079 4.079 25 C -0.149 4.149 26 C 0.086 3.914 27 F -0.147 7.147 28 C -0.151 4.151 29 C -0.074 4.074 30 H 0.247 0.753 31 H 0.409 0.591 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.011 0.989 35 H 0.080 0.920 36 H -0.042 1.042 37 H 0.011 0.989 38 H 0.264 0.736 39 H 0.020 0.980 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.148 0.852 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.102 0.721 -21.862 27.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.233 4.233 3 C 0.218 3.782 4 H 0.123 0.877 5 N -0.385 5.385 6 C 0.411 3.589 7 O -0.505 6.505 8 N -0.362 5.362 9 C 0.022 3.978 10 C -0.072 4.072 11 N -0.263 5.263 12 C 0.083 3.917 13 C -0.559 4.559 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.186 1.186 19 H -0.208 1.208 20 H -0.205 1.205 21 C -0.092 4.092 22 C 0.003 3.997 23 C -0.107 4.107 24 C -0.097 4.097 25 C -0.168 4.168 26 C 0.067 3.933 27 F -0.126 7.126 28 C -0.169 4.169 29 C -0.092 4.092 30 H 0.263 0.737 31 H 0.249 0.751 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.029 0.971 35 H 0.098 0.902 36 H -0.024 1.024 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.107 0.893 43 H 0.166 0.834 44 H 0.174 0.826 45 H 0.173 0.827 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -16.480 0.176 -21.500 27.090 hybrid contribution 1.348 0.025 0.224 1.367 sum -15.132 0.201 -21.276 26.109 Atomic orbital electron populations 1.25734 0.96723 0.98548 0.97472 1.23464 0.94897 1.02350 1.02636 1.16120 0.83490 0.97120 0.81451 0.87724 1.45232 1.71141 1.14387 1.07772 1.15883 0.78208 0.84184 0.80603 1.90881 1.57178 1.18207 1.84263 1.47403 1.64897 1.11615 1.12301 1.21611 0.94898 0.96774 0.84485 1.22374 0.95179 0.89257 1.00432 1.61997 1.31575 1.10399 1.22329 1.19370 0.83663 0.94872 0.93805 1.21502 0.97955 1.39294 0.97198 0.91614 1.25885 0.95113 0.95470 1.03146 1.70082 1.03256 1.45598 1.38599 0.85364 0.78386 0.77932 0.79126 1.18580 1.20750 1.20457 1.22520 0.96475 1.00328 0.89829 1.21868 0.94928 0.80269 1.02633 1.19688 1.01769 0.94366 0.94875 1.20964 0.97248 0.93155 0.98363 1.21339 1.01113 1.02027 0.92316 1.18046 0.99851 0.91196 0.84223 1.91498 1.86923 1.81814 1.52322 1.21349 1.02485 0.92362 1.00729 1.21070 0.95545 1.01467 0.91148 0.73653 0.75054 0.90231 0.89477 0.97095 0.90163 1.02393 0.97070 0.92737 0.96202 0.89168 0.87476 0.89281 0.83439 0.82639 0.82678 0.82930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 19.25 74.32 1.43 -1.47 16 2 C -0.23 -4.78 12.80 31.13 0.40 -4.38 16 3 C 0.32 6.31 2.58 42.44 0.11 6.42 16 4 H 0.11 2.31 7.52 -2.39 -0.02 2.29 16 5 N -0.73 -15.12 4.91 -470.23 -2.31 -17.42 16 6 C 0.71 20.43 8.24 179.05 1.48 21.90 16 7 O -0.62 -22.58 15.53 -3.98 -0.06 -22.65 16 8 N -0.63 -17.65 3.00 -835.06 -2.51 -20.15 16 9 C 0.15 4.62 6.61 86.50 0.57 5.20 16 10 C 0.06 2.17 5.47 86.54 0.47 2.64 16 11 N -0.54 -21.87 4.62 -898.88 -4.15 -26.02 16 12 C 0.21 10.74 4.72 85.56 0.40 11.15 16 13 C -0.52 -28.68 8.41 25.60 0.22 -28.46 16 14 H 0.07 3.53 7.13 -2.91 -0.02 3.51 16 15 C 0.00 0.10 5.46 84.66 0.46 0.57 16 16 N -0.93 -55.39 13.29 21.45 0.28 -55.11 16 17 Si 0.97 43.59 29.54 68.60 2.03 45.61 16 18 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 C 0.04 1.18 5.62 86.39 0.49 1.66 16 22 C 0.13 2.91 6.59 86.35 0.57 3.48 16 23 C -0.11 -1.62 4.92 -19.86 -0.10 -1.72 16 24 C -0.08 -1.02 9.03 22.26 0.20 -0.82 16 25 C -0.15 -1.94 10.03 22.31 0.22 -1.72 16 26 C 0.09 1.32 7.30 22.38 0.16 1.48 16 27 F -0.15 -2.58 17.27 44.97 0.78 -1.80 16 28 C -0.15 -2.00 10.03 22.31 0.22 -1.77 16 29 C -0.07 -1.00 9.67 22.26 0.22 -0.78 16 30 H 0.25 2.32 7.80 -4.42 -0.03 2.28 16 31 H 0.41 6.30 4.38 -92.71 -0.41 5.89 16 32 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.09 2.83 7.09 -2.39 -0.02 2.81 16 34 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 3.31 6.67 -2.39 -0.02 3.30 16 36 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 37 H 0.01 0.61 7.97 -2.39 -0.02 0.60 16 38 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 39 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.09 2.67 7.99 -2.39 -0.02 2.65 16 41 H 0.11 1.63 5.63 -2.39 -0.01 1.62 16 42 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 43 H 0.15 1.35 6.93 -2.91 -0.02 1.33 16 44 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 46 H 0.15 1.53 8.04 -2.91 -0.02 1.50 16 Total: -1.00 -72.72 388.47 2.18 -70.54 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.60 Total: 13.61 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 7.53 Total: 13.38 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -8.68 Total: -118.70 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.06 Total: -22.65 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -72.72 2.18 -70.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868636296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.912 kcal (2) G-P(sol) polarization free energy of solvation -72.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds