Wall clock time and date at job start Sat Apr 11 2020 07:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.08999 * 109.47504 * 29.87074 * 3 2 1 5 5 N 1.46504 * 109.47091 * 149.86845 * 3 2 1 6 6 C 1.34776 * 120.00057 * 275.00180 * 5 3 2 7 7 O 1.21585 * 119.99855 * 4.97289 * 6 5 3 8 8 N 1.34777 * 119.99611 * 184.97619 * 6 5 3 9 9 C 1.47076 * 120.88548 * 354.79626 * 8 6 5 10 10 C 1.53236 * 108.52193 * 231.16884 * 9 8 6 11 11 N 1.46903 * 109.34160 * 306.16869 * 10 9 8 12 12 C 1.46892 * 111.00213 * 187.25766 * 11 10 9 13 13 C 1.50701 * 109.46991 * 170.00027 * 12 11 10 14 14 H 1.07997 * 120.00176 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00030 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99880 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00256 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.46864 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47057 * 119.99912 * 17 15 13 20 20 H 1.48499 * 109.47338 * 240.00218 * 17 15 13 21 21 C 1.46894 * 111.26739 * 63.10317 * 11 10 9 22 22 C 1.47084 * 120.88042 * 174.77886 * 8 6 5 23 23 C 1.50699 * 109.47295 * 269.86784 * 3 2 1 24 24 C 1.38239 * 119.97651 * 279.73306 * 23 3 2 25 25 C 1.38203 * 120.02623 * 179.72623 * 24 23 3 26 26 C 1.38454 * 119.97343 * 0.51629 * 25 24 23 27 27 F 1.35100 * 120.02550 * 179.72705 * 26 25 24 28 28 C 1.38460 * 119.94792 * 359.75568 * 26 25 24 29 29 C 1.38192 * 119.97664 * 359.97438 * 28 26 25 30 30 H 4.18733 * 15.04012 * 0.02562 * 4 2 1 31 31 H 0.96994 * 119.99690 * 94.99928 * 5 3 2 32 32 H 1.08994 * 109.63122 * 111.45397 * 9 8 6 33 33 H 1.09007 * 109.62465 * 350.87263 * 9 8 6 34 34 H 1.09002 * 109.49361 * 186.20812 * 10 9 8 35 35 H 1.09005 * 109.49907 * 66.12573 * 10 9 8 36 36 H 1.09003 * 109.47134 * 289.99244 * 12 11 10 37 37 H 1.09000 * 109.47505 * 49.99798 * 12 11 10 38 38 H 0.97003 * 120.00035 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.49331 * 56.86009 * 21 11 10 40 40 H 1.09008 * 109.49408 * 176.91153 * 21 11 10 41 41 H 1.09006 * 109.62266 * 9.12367 * 22 8 6 42 42 H 1.08995 * 109.62626 * 248.54638 * 22 8 6 43 43 H 1.08005 * 119.98782 * 359.97438 * 24 23 3 44 44 H 1.08003 * 120.01040 * 180.29456 * 25 24 23 45 45 H 1.08005 * 120.01379 * 179.97438 * 28 26 25 46 46 H 1.08002 * 119.98933 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0098 -0.8903 -0.5118 5 7 3.1338 1.1955 -0.6934 6 6 3.2625 1.1907 -2.0350 7 8 2.8893 0.2287 -2.6780 8 7 3.8049 2.2523 -2.6636 9 6 4.1583 3.4708 -1.9196 10 6 3.5364 4.6752 -2.6343 11 7 3.9456 4.6683 -4.0452 12 6 3.5131 5.8966 -4.7248 13 6 4.1537 5.9692 -6.0870 14 1 4.8161 5.1818 -6.4148 15 6 3.8940 7.0408 -6.9147 16 7 3.0876 8.0000 -6.5153 17 14 4.6885 7.1312 -8.6029 18 1 5.5479 5.9379 -8.8100 19 1 3.6321 7.1680 -9.6458 20 1 5.5177 8.3597 -8.6946 21 6 3.4414 3.4765 -4.7404 22 6 4.0595 2.2230 -4.1120 23 6 3.1483 0.0042 1.4208 24 6 3.1872 1.1861 2.1367 25 6 3.6424 1.1895 3.4416 26 6 4.0697 0.0104 4.0283 27 9 4.5200 0.0135 5.3020 28 6 4.0356 -1.1718 3.3084 29 6 3.5748 -1.1738 2.0055 30 1 -1.0499 -0.0006 -0.0009 31 1 3.3641 1.9900 -0.1869 32 1 5.2423 3.5813 -1.8916 33 1 3.7677 3.4059 -0.9040 34 1 3.8784 5.5955 -2.1609 35 1 2.4499 4.6149 -2.5705 36 1 2.4285 5.8892 -4.8334 37 1 3.8134 6.7630 -4.1355 38 1 2.9046 8.7537 -7.0977 39 1 2.3563 3.4329 -4.6472 40 1 3.7142 3.5276 -5.7945 41 1 3.6035 1.3330 -4.5458 42 1 5.1340 2.2134 -4.2947 43 1 2.8579 2.1065 1.6775 44 1 3.6682 2.1122 4.0023 45 1 4.3690 -2.0921 3.7648 46 1 3.5485 -2.0958 1.4436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868636297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:15 Heat of formation + Delta-G solvation = 32.316856 kcal Electronic energy + Delta-G solvation = -29208.077414 eV Core-core repulsion = 25014.483171 eV Total energy + Delta-G solvation = -4193.594243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.31307 -40.66119 -39.56989 -37.74934 -35.78856 -34.47911 -32.80258 -32.29765 -31.66811 -31.24518 -30.54640 -28.30044 -26.55786 -25.38805 -23.68773 -23.22275 -22.30350 -22.11473 -20.86058 -19.53752 -18.74893 -18.34849 -17.85936 -16.99329 -16.42077 -16.24153 -16.00950 -15.79731 -15.62957 -15.03084 -14.68888 -14.58189 -14.49263 -14.35335 -14.05505 -13.84823 -13.76912 -13.57314 -13.38650 -12.95166 -12.65665 -12.51147 -12.26797 -12.03313 -11.52594 -11.32145 -11.19928 -10.87694 -10.83488 -10.73895 -10.61537 -10.53826 -10.45002 -10.05228 -9.88308 -9.61768 -9.52372 -9.27928 -9.12542 -8.51141 -8.40702 -7.35521 -6.07949 -4.09654 0.56341 0.72788 2.20727 2.61914 2.96791 3.05989 3.22916 3.28514 3.36252 3.40736 3.77945 3.81701 4.14273 4.20870 4.33648 4.37733 4.45121 4.72272 4.73334 4.81407 5.10941 5.16942 5.26454 5.32308 5.38256 5.40976 5.43042 5.61443 5.62486 5.68458 5.73500 5.78328 5.85281 5.93852 6.00051 6.15759 6.24735 6.35136 6.37913 6.53104 6.62841 6.94964 7.19425 7.26125 7.42149 7.72533 7.88447 7.98679 8.09740 8.45372 8.56595 8.97954 9.55089 11.02926 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019761 B = 0.002065 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.597507 B =13556.971660 C =14132.083249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.198 4.198 3 C 0.322 3.678 4 H 0.118 0.882 5 N -0.742 5.742 6 C 0.710 3.290 7 O -0.589 6.589 8 N -0.622 5.622 9 C 0.118 3.882 10 C 0.040 3.960 11 N -0.534 5.534 12 C 0.194 3.806 13 C -0.508 4.508 14 H 0.065 0.935 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.050 3.950 22 C 0.133 3.867 23 C -0.099 4.099 24 C -0.077 4.077 25 C -0.148 4.148 26 C 0.102 3.898 27 F -0.139 7.139 28 C -0.150 4.150 29 C -0.071 4.071 30 H 0.218 0.782 31 H 0.397 0.603 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.026 0.974 36 H -0.009 1.009 37 H 0.031 0.969 38 H 0.261 0.739 39 H 0.025 0.975 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.132 0.868 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -16.485 21.132 26.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.200 4.200 3 C 0.216 3.784 4 H 0.136 0.864 5 N -0.400 5.400 6 C 0.412 3.588 7 O -0.467 6.467 8 N -0.359 5.359 9 C -0.006 4.006 10 C -0.089 4.089 11 N -0.260 5.260 12 C 0.069 3.931 13 C -0.547 4.547 14 H 0.083 0.917 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.079 4.079 22 C 0.010 3.990 23 C -0.100 4.100 24 C -0.096 4.096 25 C -0.167 4.167 26 C 0.083 3.917 27 F -0.117 7.117 28 C -0.169 4.169 29 C -0.089 4.089 30 H 0.235 0.765 31 H 0.236 0.764 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.045 0.955 36 H 0.009 0.991 37 H 0.049 0.951 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.116 0.884 41 H 0.108 0.892 42 H 0.090 0.910 43 H 0.150 0.850 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.196 -17.017 20.598 26.719 hybrid contribution -0.661 0.853 -0.334 1.129 sum -0.465 -16.165 20.265 25.926 Atomic orbital electron populations 1.24940 0.95855 0.98724 0.99804 1.23148 0.94266 1.01720 1.00840 1.16133 0.83408 0.90251 0.88566 0.86414 1.45369 1.72095 1.16554 1.06028 1.15775 0.78357 0.83312 0.81355 1.90906 1.55646 1.35191 1.64943 1.47399 1.64926 1.13855 1.09699 1.21780 1.00832 0.84264 0.93675 1.22381 0.97205 0.97151 0.92207 1.62082 1.59735 1.04229 0.99916 1.19729 0.93958 0.85419 0.94018 1.21176 1.27595 1.06622 0.99303 0.91688 1.25001 0.95329 0.95605 0.98708 1.69966 1.36328 1.10422 1.37038 0.86433 0.79113 0.78071 0.83762 1.19583 1.21112 1.21017 1.22372 0.96334 0.89246 0.99964 1.21777 1.00820 0.99165 0.77249 1.19757 1.00931 0.94247 0.95063 1.20813 0.97458 0.98048 0.93235 1.21147 1.01772 0.97682 0.96121 1.17774 0.99234 0.94956 0.79735 1.91519 1.86677 1.97325 1.36196 1.21148 1.03021 0.97556 0.95153 1.20875 0.95970 0.97930 0.94124 0.76501 0.76436 0.90406 0.91510 0.90038 0.95542 0.99121 0.95064 0.92933 0.95713 0.88395 0.89217 0.90998 0.84980 0.84245 0.84264 0.84308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 19.25 29.55 0.57 -1.26 16 2 C -0.20 -2.28 12.81 -37.12 -0.48 -2.75 16 3 C 0.32 3.31 2.58 -71.87 -0.19 3.12 16 4 H 0.12 1.27 7.51 -51.93 -0.39 0.88 16 5 N -0.74 -8.35 4.90 -62.60 -0.31 -8.66 16 6 C 0.71 10.69 8.25 -86.92 -0.72 9.97 16 7 O -0.59 -10.83 15.51 5.29 0.08 -10.75 16 8 N -0.62 -9.24 3.01 -178.19 -0.54 -9.78 16 9 C 0.12 1.51 6.54 -3.61 -0.02 1.49 16 10 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 11 N -0.53 -10.86 4.62 -235.77 -1.09 -11.95 16 12 C 0.19 4.85 4.72 -4.98 -0.02 4.83 16 13 C -0.51 -13.80 8.41 -34.44 -0.29 -14.09 16 14 H 0.06 1.74 7.13 -52.49 -0.37 1.37 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -26.19 13.29 55.43 0.74 -25.46 16 17 Si 0.90 21.23 29.54 -169.99 -5.02 16.20 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.05 0.95 5.46 -3.71 -0.02 0.93 16 22 C 0.13 2.14 6.61 -3.60 -0.02 2.12 16 23 C -0.10 -0.80 4.92 -104.62 -0.51 -1.32 16 24 C -0.08 -0.56 9.04 -39.59 -0.36 -0.92 16 25 C -0.15 -1.06 10.03 -39.51 -0.40 -1.45 16 26 C 0.10 0.80 7.30 -39.42 -0.29 0.52 16 27 F -0.14 -1.22 17.27 2.25 0.04 -1.18 16 28 C -0.15 -1.02 10.03 -39.52 -0.40 -1.42 16 29 C -0.07 -0.49 9.67 -39.59 -0.38 -0.87 16 30 H 0.22 1.53 7.80 -54.09 -0.42 1.11 16 31 H 0.40 3.59 4.39 -40.82 -0.18 3.41 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.64 5.74 -51.92 -0.30 0.34 16 34 H 0.08 1.26 7.99 -51.93 -0.41 0.85 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 37 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.10 1.98 6.67 -51.92 -0.35 1.64 16 41 H 0.09 1.47 7.04 -51.93 -0.37 1.10 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.13 0.80 6.90 -52.48 -0.36 0.44 16 44 H 0.14 0.76 8.06 -52.48 -0.42 0.34 16 45 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 46 H 0.14 0.70 8.04 -52.49 -0.42 0.28 16 LS Contribution 388.43 15.07 5.85 5.85 Total: -1.00 -33.27 388.43 -9.97 -43.23 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -6.08 Total: 1.51 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -3.64 Total: 0.96 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -1.20 Total: -55.83 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.27 -9.97 -43.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868636297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.549 kcal (2) G-P(sol) polarization free energy of solvation -33.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds