Wall clock time and date at job start Sat Apr 11 2020 07:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00074 * 2 1 4 4 C 1.52996 * 109.47147 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.51692 * 305.10224 * 4 3 2 6 6 O 1.21217 * 120.00282 * 264.90432 * 5 4 3 7 7 O 1.34313 * 119.99760 * 84.90020 * 5 4 3 8 8 C 1.34920 * 117.00101 * 180.02562 * 7 5 4 9 9 H 1.08005 * 119.99749 * 359.97438 * 8 7 5 10 10 C 1.38751 * 120.00229 * 179.97438 * 8 7 5 11 11 N 1.31438 * 120.00052 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99953 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47085 * 89.99755 * 12 10 8 14 14 H 1.48491 * 109.47190 * 210.00016 * 12 10 8 15 15 H 1.48501 * 109.47102 * 330.00000 * 12 10 8 16 16 C 1.53306 * 109.51064 * 185.00512 * 4 3 2 17 17 N 1.47158 * 108.37931 * 292.37865 * 16 4 3 18 18 C 1.34777 * 120.97740 * 129.44675 * 17 16 4 19 19 O 1.21513 * 120.00316 * 359.97438 * 18 17 16 20 20 O 1.34638 * 119.99672 * 179.72310 * 18 17 16 21 21 C 1.45202 * 116.99776 * 180.27362 * 20 18 17 22 22 C 1.53000 * 109.46964 * 60.00058 * 21 20 18 23 23 C 1.53008 * 109.46858 * 179.97438 * 21 20 18 24 24 C 1.52994 * 109.47273 * 299.99862 * 21 20 18 25 25 C 1.47147 * 118.03578 * 309.71406 * 17 16 4 26 26 C 1.52879 * 108.60887 * 50.23134 * 25 17 16 27 27 O 1.42954 * 109.51430 * 65.26063 * 4 3 2 28 28 H 1.08996 * 109.47057 * 299.99519 * 1 2 3 29 29 H 1.08995 * 109.47028 * 59.99673 * 1 2 3 30 30 H 1.08997 * 109.46600 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46549 * 60.00414 * 3 2 1 32 32 H 1.08998 * 109.47246 * 300.01062 * 3 2 1 33 33 H 0.96998 * 120.00066 * 179.97438 * 11 10 8 34 34 H 1.08993 * 109.67923 * 172.65743 * 16 4 3 35 35 H 1.09002 * 109.71299 * 52.11629 * 16 4 3 36 36 H 1.08997 * 109.47363 * 60.00315 * 22 21 20 37 37 H 1.09005 * 109.46795 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.46811 * 299.99419 * 22 21 20 39 39 H 1.08996 * 109.46984 * 60.00080 * 23 21 20 40 40 H 1.08996 * 109.46584 * 179.97438 * 23 21 20 41 41 H 1.08998 * 109.47272 * 300.00133 * 23 21 20 42 42 H 1.08995 * 109.47307 * 59.99582 * 24 21 20 43 43 H 1.08999 * 109.47211 * 180.02562 * 24 21 20 44 44 H 1.09010 * 109.46887 * 300.00170 * 24 21 20 45 45 H 1.09003 * 109.67943 * 170.01600 * 25 17 16 46 46 H 1.09007 * 109.68493 * 290.55882 * 25 17 16 47 47 H 1.08998 * 109.58251 * 187.92272 * 26 25 17 48 48 H 1.09002 * 109.36624 * 67.81784 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9733 0.3305 1.1611 6 8 4.3062 0.8505 2.2042 7 8 3.9946 -1.0071 1.0407 8 6 4.3961 -1.7128 2.1182 9 1 4.6824 -1.1991 3.0241 10 6 4.4412 -3.0985 2.0626 11 7 4.8329 -3.7859 3.1122 12 14 3.9454 -3.9870 0.4960 13 1 5.1371 -4.1611 -0.3727 14 1 3.3838 -5.3182 0.8386 15 1 2.9210 -3.1878 -0.2233 16 6 4.1596 2.5792 0.1254 17 7 3.8712 3.3298 -1.1071 18 6 3.3423 4.5684 -1.0573 19 8 3.0959 5.0812 0.0164 20 8 3.0915 5.2395 -2.1972 21 6 2.5272 6.5711 -2.0676 22 6 3.4879 7.4569 -1.2718 23 6 2.3137 7.1721 -3.4585 24 6 1.1860 6.4877 -1.3362 25 6 4.1719 2.6856 -2.3955 26 6 3.5522 1.2881 -2.3985 27 8 3.9664 0.5850 -1.2247 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 4.8640 -4.7546 3.0734 34 1 5.2378 2.4883 0.2562 35 1 3.7285 3.0990 0.9811 36 1 4.4434 7.5164 -1.7930 37 1 3.0641 8.4564 -1.1742 38 1 3.6403 7.0289 -0.2810 39 1 1.6295 6.5412 -4.0257 40 1 1.8897 8.1715 -3.3611 41 1 3.2694 7.2316 -3.9792 42 1 1.3385 6.0597 -0.3455 43 1 0.7622 7.4873 -1.2393 44 1 0.5016 5.8566 -1.9032 45 1 3.7486 3.2756 -3.2084 46 1 5.2516 2.6058 -2.5229 47 1 3.8817 0.7443 -3.2839 48 1 2.4657 1.3745 -2.4068 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873466381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:17 Heat of formation + Delta-G solvation = -221.445580 kcal Electronic energy + Delta-G solvation = -33352.400001 eV Core-core repulsion = 28795.827333 eV Total energy + Delta-G solvation = -4556.572668 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.26403 -40.15766 -38.62442 -37.46772 -36.96510 -35.42330 -35.07927 -34.00931 -32.29581 -32.08761 -28.97579 -27.70375 -27.63443 -27.17961 -26.05738 -25.24674 -24.10970 -22.84245 -21.36742 -19.66157 -19.27096 -18.30942 -17.88975 -17.50718 -16.83209 -16.71718 -16.29614 -16.08244 -15.55372 -15.50033 -15.15052 -14.91240 -14.71721 -14.58186 -14.16898 -14.00646 -13.82256 -13.72215 -13.44833 -13.25506 -12.82907 -12.50972 -12.46925 -12.31691 -12.28856 -12.17690 -11.98548 -11.77540 -11.70766 -11.64580 -11.54186 -11.29239 -11.15863 -10.73986 -10.61719 -10.41200 -10.26107 -10.17693 -10.06445 -9.62332 -9.57120 -9.16633 -8.76905 -8.59467 -6.31584 -4.04898 1.82937 2.64360 2.99165 3.31335 3.36679 3.50223 3.56119 3.63723 3.82224 4.12455 4.37291 4.42660 4.47191 4.59773 4.61722 4.78838 4.85897 4.99084 5.02978 5.15302 5.17324 5.22996 5.24964 5.28543 5.35889 5.39797 5.41249 5.46074 5.49200 5.54923 5.58400 5.58635 5.66901 5.68955 5.81921 5.82174 5.99135 6.03741 6.13297 6.23470 6.36881 7.05490 7.12772 7.26710 7.76628 8.08524 8.13431 8.60908 9.07255 9.76046 10.76025 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.003185 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.721888 B = 8787.995940 C = 8965.289585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.360 6.360 3 C 0.043 3.957 4 C 0.129 3.871 5 C 0.431 3.569 6 O -0.535 6.535 7 O -0.212 6.212 8 C -0.378 4.378 9 H 0.109 0.891 10 C 0.069 3.931 11 N -0.872 5.872 12 Si 0.901 3.099 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.250 1.250 16 C 0.124 3.876 17 N -0.599 5.599 18 C 0.656 3.344 19 O -0.561 6.561 20 O -0.362 6.362 21 C 0.135 3.865 22 C -0.184 4.184 23 C -0.140 4.140 24 C -0.184 4.184 25 C 0.074 3.926 26 C 0.039 3.961 27 O -0.339 6.339 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.279 0.721 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.114 0.886 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.546 18.927 -16.843 26.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C -0.034 4.034 4 C 0.087 3.913 5 C 0.276 3.724 6 O -0.432 6.432 7 O -0.118 6.118 8 C -0.453 4.453 9 H 0.127 0.873 10 C -0.135 4.135 11 N -0.511 5.511 12 Si 0.726 3.274 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.173 1.173 16 C 0.003 3.997 17 N -0.340 5.340 18 C 0.411 3.589 19 O -0.450 6.450 20 O -0.277 6.277 21 C 0.098 3.902 22 C -0.241 4.241 23 C -0.197 4.197 24 C -0.242 4.242 25 C -0.049 4.049 26 C -0.039 4.039 27 O -0.257 6.257 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.120 0.880 46 H 0.102 0.898 47 H 0.132 0.868 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.314 18.729 -16.200 25.821 hybrid contribution -0.550 -0.011 -0.589 0.806 sum -7.864 18.718 -16.789 26.345 Atomic orbital electron populations 1.22756 0.81416 1.02998 0.99377 1.88178 1.19150 1.25279 1.95178 1.22974 0.92324 0.86676 1.01428 1.21515 0.92949 0.91857 0.85002 1.21510 0.80737 0.83115 0.87066 1.90655 1.49012 1.74102 1.29468 1.83599 1.70322 1.16896 1.40985 1.20725 1.43630 0.89211 0.91772 0.87315 1.24528 0.95470 0.95187 0.98297 1.69617 1.44560 1.07808 1.29143 0.86236 0.80263 0.78325 0.82534 1.19892 1.21085 1.17299 1.22042 1.02350 0.89004 0.86323 1.46975 1.65029 1.13555 1.08469 1.17853 0.77011 0.81423 0.82605 1.90919 1.57033 1.67743 1.29309 1.86276 1.77158 1.31051 1.33250 1.22087 0.93253 0.77847 0.96963 1.22521 0.98984 0.99803 1.02810 1.21854 1.02986 1.00729 0.94112 1.22525 0.95401 1.03098 1.03127 1.22462 1.02260 0.94884 0.85252 1.23024 0.99364 0.91795 0.89702 1.88282 1.75509 1.50007 1.11898 0.94107 0.94629 0.89281 0.91595 0.92227 0.91063 0.88432 0.86226 0.92153 0.91153 0.89242 0.91500 0.90149 0.91455 0.89259 0.91114 0.92219 0.87989 0.89826 0.86786 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.36 -6.86 9.99 -42.99 -0.43 -7.29 16 3 C 0.04 0.74 4.43 37.16 0.16 0.90 16 4 C 0.13 2.44 0.86 -91.62 -0.08 2.36 16 5 C 0.43 10.70 6.35 36.00 0.23 10.93 16 6 O -0.54 -14.40 15.49 -19.06 -0.30 -14.70 16 7 O -0.21 -5.93 8.14 -26.43 -0.22 -6.15 16 8 C -0.38 -11.57 10.10 30.92 0.31 -11.26 16 9 H 0.11 3.62 7.09 -52.48 -0.37 3.25 16 10 C 0.07 2.05 5.49 -17.53 -0.10 1.95 16 11 N -0.87 -26.30 13.96 55.48 0.77 -25.53 16 12 Si 0.90 22.38 28.62 -169.99 -4.86 17.52 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.25 -6.24 7.11 56.52 0.40 -5.83 16 16 C 0.12 2.04 4.72 -3.52 -0.02 2.02 16 17 N -0.60 -8.05 2.63 -178.31 -0.47 -8.52 16 18 C 0.66 8.95 7.75 54.06 0.42 9.37 16 19 O -0.56 -8.83 11.35 -19.28 -0.22 -9.05 16 20 O -0.36 -4.11 8.58 -40.32 -0.35 -4.46 16 21 C 0.14 1.26 1.13 -90.62 -0.10 1.15 16 22 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 23 C -0.14 -0.89 8.85 37.16 0.33 -0.56 16 24 C -0.18 -1.71 8.37 37.15 0.31 -1.40 16 25 C 0.07 0.79 6.62 -3.75 -0.02 0.76 16 26 C 0.04 0.47 6.59 37.10 0.24 0.71 16 27 O -0.34 -6.08 9.99 -55.48 -0.55 -6.64 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.86 5.96 -51.93 -0.31 0.55 16 33 H 0.28 7.69 8.31 -40.82 -0.34 7.35 16 34 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 35 H 0.12 2.08 7.05 -51.93 -0.37 1.71 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 1.08 5.88 -51.93 -0.31 0.77 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 1.07 5.88 -51.93 -0.31 0.76 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 45 H 0.10 0.86 7.01 -51.93 -0.36 0.50 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.06 0.69 6.14 -51.93 -0.32 0.38 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -35.88 388.02 -5.05 -40.93 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -7.39 Total: 0.93 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 3.11 Total: 17.09 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.31 Total: -34.05 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -2.06 Total: -48.27 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.86 Total: 17.52 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.88 -5.05 -40.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873466381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -180.512 kcal (2) G-P(sol) polarization free energy of solvation -35.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds