Wall clock time and date at job start Sat Apr 11 2020 07:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00074 * 2 1 4 4 C 1.52996 * 109.47147 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.51692 * 305.10224 * 4 3 2 6 6 O 1.21217 * 120.00282 * 264.90432 * 5 4 3 7 7 O 1.34313 * 119.99760 * 84.90020 * 5 4 3 8 8 C 1.34920 * 117.00101 * 180.02562 * 7 5 4 9 9 H 1.08005 * 119.99749 * 359.97438 * 8 7 5 10 10 C 1.38751 * 120.00229 * 179.97438 * 8 7 5 11 11 N 1.31438 * 120.00052 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99953 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.47085 * 89.99755 * 12 10 8 14 14 H 1.48491 * 109.47190 * 210.00016 * 12 10 8 15 15 H 1.48501 * 109.47102 * 330.00000 * 12 10 8 16 16 C 1.53306 * 109.51064 * 185.00512 * 4 3 2 17 17 N 1.47158 * 108.37931 * 292.37865 * 16 4 3 18 18 C 1.34777 * 120.97740 * 129.44675 * 17 16 4 19 19 O 1.21513 * 120.00316 * 359.97438 * 18 17 16 20 20 O 1.34638 * 119.99672 * 179.72310 * 18 17 16 21 21 C 1.45202 * 116.99776 * 180.27362 * 20 18 17 22 22 C 1.53000 * 109.46964 * 60.00058 * 21 20 18 23 23 C 1.53008 * 109.46858 * 179.97438 * 21 20 18 24 24 C 1.52994 * 109.47273 * 299.99862 * 21 20 18 25 25 C 1.47147 * 118.03578 * 309.71406 * 17 16 4 26 26 C 1.52879 * 108.60887 * 50.23134 * 25 17 16 27 27 O 1.42954 * 109.51430 * 65.26063 * 4 3 2 28 28 H 1.08996 * 109.47057 * 299.99519 * 1 2 3 29 29 H 1.08995 * 109.47028 * 59.99673 * 1 2 3 30 30 H 1.08997 * 109.46600 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46549 * 60.00414 * 3 2 1 32 32 H 1.08998 * 109.47246 * 300.01062 * 3 2 1 33 33 H 0.96998 * 120.00066 * 179.97438 * 11 10 8 34 34 H 1.08993 * 109.67923 * 172.65743 * 16 4 3 35 35 H 1.09002 * 109.71299 * 52.11629 * 16 4 3 36 36 H 1.08997 * 109.47363 * 60.00315 * 22 21 20 37 37 H 1.09005 * 109.46795 * 180.02562 * 22 21 20 38 38 H 1.09001 * 109.46811 * 299.99419 * 22 21 20 39 39 H 1.08996 * 109.46984 * 60.00080 * 23 21 20 40 40 H 1.08996 * 109.46584 * 179.97438 * 23 21 20 41 41 H 1.08998 * 109.47272 * 300.00133 * 23 21 20 42 42 H 1.08995 * 109.47307 * 59.99582 * 24 21 20 43 43 H 1.08999 * 109.47211 * 180.02562 * 24 21 20 44 44 H 1.09010 * 109.46887 * 300.00170 * 24 21 20 45 45 H 1.09003 * 109.67943 * 170.01600 * 25 17 16 46 46 H 1.09007 * 109.68493 * 290.55882 * 25 17 16 47 47 H 1.08998 * 109.58251 * 187.92272 * 26 25 17 48 48 H 1.09002 * 109.36624 * 67.81784 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9733 0.3305 1.1611 6 8 4.3062 0.8505 2.2042 7 8 3.9946 -1.0071 1.0407 8 6 4.3961 -1.7128 2.1182 9 1 4.6824 -1.1991 3.0241 10 6 4.4412 -3.0985 2.0626 11 7 4.8329 -3.7859 3.1122 12 14 3.9454 -3.9870 0.4960 13 1 5.1371 -4.1611 -0.3727 14 1 3.3838 -5.3182 0.8386 15 1 2.9210 -3.1878 -0.2233 16 6 4.1596 2.5792 0.1254 17 7 3.8712 3.3298 -1.1071 18 6 3.3423 4.5684 -1.0573 19 8 3.0959 5.0812 0.0164 20 8 3.0915 5.2395 -2.1972 21 6 2.5272 6.5711 -2.0676 22 6 3.4879 7.4569 -1.2718 23 6 2.3137 7.1721 -3.4585 24 6 1.1860 6.4877 -1.3362 25 6 4.1719 2.6856 -2.3955 26 6 3.5522 1.2881 -2.3985 27 8 3.9664 0.5850 -1.2247 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 4.8640 -4.7546 3.0734 34 1 5.2378 2.4883 0.2562 35 1 3.7285 3.0990 0.9811 36 1 4.4434 7.5164 -1.7930 37 1 3.0641 8.4564 -1.1742 38 1 3.6403 7.0289 -0.2810 39 1 1.6295 6.5412 -4.0257 40 1 1.8897 8.1715 -3.3611 41 1 3.2694 7.2316 -3.9792 42 1 1.3385 6.0597 -0.3455 43 1 0.7622 7.4873 -1.2393 44 1 0.5016 5.8566 -1.9032 45 1 3.7486 3.2756 -3.2084 46 1 5.2516 2.6058 -2.5229 47 1 3.8817 0.7443 -3.2839 48 1 2.4657 1.3745 -2.4068 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873466381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:16 Heat of formation + Delta-G solvation = -246.726617 kcal Electronic energy + Delta-G solvation = -33353.496269 eV Core-core repulsion = 28795.827333 eV Total energy + Delta-G solvation = -4557.668936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.176 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.42089 -41.54724 -40.33801 -38.66304 -38.06080 -37.52280 -36.20122 -34.84834 -34.50551 -33.45157 -30.09961 -28.35964 -28.35159 -28.26041 -28.06206 -26.52346 -25.54754 -23.99049 -22.65795 -21.05251 -20.35904 -20.13613 -19.60203 -18.90220 -18.04123 -17.81420 -17.70667 -17.27446 -17.11311 -16.63026 -16.54426 -16.21344 -16.01295 -15.83025 -15.64563 -15.45457 -14.92075 -14.79091 -14.72246 -14.48548 -14.32038 -14.00352 -13.45388 -13.44927 -13.24495 -13.16168 -13.11116 -12.86448 -12.83375 -12.75604 -12.51364 -12.44122 -12.40464 -12.34944 -12.25220 -11.91789 -11.81099 -11.41690 -11.39057 -11.14875 -11.11170 -10.82620 -10.80411 -9.88928 -8.56030 -6.40598 0.79313 1.11234 1.33704 1.45412 1.58913 1.61058 2.06371 2.31043 2.37262 2.57018 2.77405 2.92151 3.36971 3.49846 3.74953 3.80381 3.82403 3.86502 3.95754 3.97721 4.04100 4.13306 4.24637 4.34634 4.41905 4.44771 4.48402 4.52270 4.63441 4.67711 4.77059 4.78870 4.79198 4.83781 4.87064 4.91152 4.99975 5.18417 5.30189 5.34750 5.41209 5.44530 5.83818 5.87353 6.03185 6.11550 6.43059 6.80284 7.11435 7.56390 8.56304 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020056 B = 0.003185 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.721888 B = 8787.995940 C = 8965.289585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.049 3.951 4 C 0.139 3.861 5 C 0.431 3.569 6 O -0.565 6.565 7 O -0.222 6.222 8 C -0.407 4.407 9 H 0.060 0.940 10 C 0.024 3.976 11 N -0.911 5.911 12 Si 0.977 3.023 13 H -0.259 1.259 14 H -0.263 1.263 15 H -0.252 1.252 16 C 0.136 3.864 17 N -0.597 5.597 18 C 0.657 3.343 19 O -0.587 6.587 20 O -0.355 6.355 21 C 0.124 3.876 22 C -0.182 4.182 23 C -0.133 4.133 24 C -0.182 4.182 25 C 0.076 3.924 26 C 0.032 3.968 27 O -0.365 6.365 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.290 0.710 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.065 0.935 45 H 0.133 0.867 46 H 0.094 0.906 47 H 0.147 0.853 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.984 19.951 -21.175 30.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C -0.028 4.028 4 C 0.097 3.903 5 C 0.277 3.723 6 O -0.463 6.463 7 O -0.129 6.129 8 C -0.483 4.483 9 H 0.078 0.922 10 C -0.177 4.177 11 N -0.551 5.551 12 Si 0.797 3.203 13 H -0.184 1.184 14 H -0.187 1.187 15 H -0.176 1.176 16 C 0.013 3.987 17 N -0.339 5.339 18 C 0.412 3.588 19 O -0.477 6.477 20 O -0.269 6.269 21 C 0.088 3.912 22 C -0.239 4.239 23 C -0.190 4.190 24 C -0.239 4.239 25 C -0.045 4.045 26 C -0.044 4.044 27 O -0.284 6.284 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.151 0.849 46 H 0.112 0.888 47 H 0.165 0.835 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.754 19.780 -20.548 29.834 hybrid contribution -0.122 -0.144 0.775 0.798 sum -8.876 19.636 -19.772 29.246 Atomic orbital electron populations 1.22998 0.79040 1.04031 1.01147 1.88119 1.21927 1.26264 1.95490 1.22966 0.90673 0.86484 1.02651 1.21317 0.94290 0.90930 0.83789 1.22909 0.78183 0.82577 0.88666 1.90625 1.49601 1.74433 1.31607 1.83623 1.71333 1.18272 1.39661 1.20422 1.46201 0.90166 0.91481 0.92216 1.25474 0.94683 0.95364 1.02191 1.69695 1.45187 1.08805 1.31373 0.85152 0.80190 0.77400 0.77570 1.18398 1.18744 1.17576 1.21660 1.01511 0.88022 0.87540 1.46915 1.65054 1.13554 1.08337 1.17928 0.76601 0.81363 0.82876 1.90928 1.57874 1.68349 1.30568 1.86293 1.76983 1.31944 1.31679 1.22483 0.92883 0.76839 0.98974 1.22490 0.99582 1.00782 1.01060 1.21874 1.03637 1.01613 0.91872 1.22492 0.95766 1.04244 1.01404 1.22681 1.03195 0.94217 0.84425 1.23445 1.00151 0.92567 0.88238 1.88223 1.76062 1.51439 1.12712 0.93704 0.91429 0.88727 0.92333 0.88848 0.89978 0.89199 0.87855 0.91772 0.89033 0.92438 0.90816 0.88063 0.90945 0.92390 0.89058 0.91581 0.84931 0.88763 0.83507 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 11.01 113.37 1.25 1.87 16 2 O -0.40 -14.88 9.99 -141.57 -1.41 -16.29 16 3 C 0.05 1.64 4.43 71.98 0.32 1.96 16 4 C 0.14 5.28 0.86 -11.44 -0.01 5.27 16 5 C 0.43 22.30 6.35 71.23 0.45 22.76 16 6 O -0.57 -32.40 15.49 20.75 0.32 -32.08 16 7 O -0.22 -12.86 8.14 20.31 0.17 -12.70 16 8 C -0.41 -26.24 10.10 67.94 0.69 -25.55 16 9 H 0.06 4.32 7.09 -2.91 -0.02 4.30 16 10 C 0.02 1.43 5.49 84.87 0.47 1.90 16 11 N -0.91 -56.46 13.96 21.62 0.30 -56.16 16 12 Si 0.98 46.31 28.62 68.60 1.96 48.28 16 13 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 14 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 15 H -0.25 -11.98 7.11 99.48 0.71 -11.27 16 16 C 0.14 4.52 4.72 86.36 0.41 4.93 16 17 N -0.60 -15.19 2.63 -948.46 -2.49 -17.69 16 18 C 0.66 17.10 7.75 129.79 1.01 18.11 16 19 O -0.59 -18.62 11.35 19.80 0.22 -18.40 16 20 O -0.35 -7.13 8.58 -55.47 -0.48 -7.61 16 21 C 0.12 2.00 1.13 -10.79 -0.01 1.99 16 22 C -0.18 -3.11 8.37 71.98 0.60 -2.51 16 23 C -0.13 -1.18 8.85 71.98 0.64 -0.54 16 24 C -0.18 -3.02 8.37 71.98 0.60 -2.42 16 25 C 0.08 1.36 6.62 86.22 0.57 1.93 16 26 C 0.03 0.67 6.59 71.94 0.47 1.14 16 27 O -0.37 -12.62 9.99 -129.62 -1.29 -13.91 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.09 2.45 5.96 -2.39 -0.01 2.43 16 33 H 0.29 16.16 8.31 -92.71 -0.77 15.39 16 34 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.10 3.77 7.05 -2.39 -0.02 3.75 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.06 1.38 5.88 -2.39 -0.01 1.37 16 39 H 0.07 0.58 8.14 -2.39 -0.02 0.57 16 40 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.13 1.62 7.01 -2.39 -0.02 1.61 16 46 H 0.09 1.54 8.14 -2.38 -0.02 1.53 16 47 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.07 1.32 6.14 -2.39 -0.01 1.30 16 Total: -1.00 -83.67 388.02 5.72 -77.96 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.97 Total: 17.77 kcal Atomic # 6 Polarization: 23.38 SS G_CDS: 7.45 Total: 30.83 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -2.19 Total: -73.85 kcal Atomic # 8 Polarization: -98.52 SS G_CDS: -2.47 Total: -100.99 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 1.96 Total: 48.28 kcal Total: -83.67 5.72 -77.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873466381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.770 kcal (2) G-P(sol) polarization free energy of solvation -83.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -246.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds