Wall clock time and date at job start Sat Apr 11 2020 07:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99475 * 2 1 4 4 C 1.53003 * 109.46781 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.55486 * 59.87919 * 4 3 2 6 6 O 1.21209 * 120.00177 * 95.12466 * 5 4 3 7 7 O 1.34311 * 119.99759 * 275.12714 * 5 4 3 8 8 C 1.34923 * 117.00178 * 180.02562 * 7 5 4 9 9 H 1.07998 * 119.99788 * 0.02562 * 8 7 5 10 10 C 1.38753 * 120.00184 * 179.97438 * 8 7 5 11 11 N 1.31441 * 119.99809 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99777 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47081 * 60.00659 * 12 10 8 14 14 H 1.48505 * 109.46918 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.47230 * 300.00387 * 12 10 8 16 16 C 1.53299 * 109.51104 * 180.02562 * 4 3 2 17 17 N 1.47144 * 108.38679 * 67.62051 * 16 4 3 18 18 C 1.34784 * 120.98313 * 230.51383 * 17 16 4 19 19 O 1.21507 * 119.99927 * 359.97438 * 18 17 16 20 20 O 1.34634 * 119.99829 * 179.72811 * 18 17 16 21 21 C 1.45201 * 116.99818 * 180.02562 * 20 18 17 22 22 C 1.53001 * 109.46978 * 59.99497 * 21 20 18 23 23 C 1.52998 * 109.47141 * 179.97438 * 21 20 18 24 24 C 1.53000 * 109.47167 * 299.99716 * 21 20 18 25 25 C 1.47155 * 118.03670 * 50.78805 * 17 16 4 26 26 C 1.53711 * 108.16066 * 309.16032 * 25 17 16 27 27 O 1.42957 * 109.14846 * 52.53443 * 26 25 17 28 28 H 1.08996 * 109.47704 * 59.99368 * 1 2 3 29 29 H 1.09001 * 109.46966 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46777 * 299.99313 * 1 2 3 31 31 H 1.09000 * 109.46956 * 60.00916 * 3 2 1 32 32 H 1.09000 * 109.47880 * 300.00230 * 3 2 1 33 33 H 0.97000 * 119.99909 * 179.97438 * 11 10 8 34 34 H 1.09005 * 109.67999 * 307.89364 * 16 4 3 35 35 H 1.08999 * 109.71176 * 187.36532 * 16 4 3 36 36 H 1.09001 * 109.46839 * 60.00396 * 22 21 20 37 37 H 1.09003 * 109.46834 * 179.97438 * 22 21 20 38 38 H 1.08998 * 109.47606 * 299.99735 * 22 21 20 39 39 H 1.09001 * 109.46982 * 59.99892 * 23 21 20 40 40 H 1.09004 * 109.46956 * 180.02562 * 23 21 20 41 41 H 1.09001 * 109.47443 * 300.00074 * 23 21 20 42 42 H 1.09002 * 109.47011 * 59.99915 * 24 21 20 43 43 H 1.08994 * 109.47249 * 179.97438 * 24 21 20 44 44 H 1.09001 * 109.47037 * 300.00158 * 24 21 20 45 45 H 1.09001 * 109.67933 * 68.93815 * 25 17 16 46 46 H 1.09001 * 109.67870 * 189.49027 * 25 17 16 47 47 H 1.09004 * 109.65064 * 292.57197 * 26 25 17 48 48 H 1.08997 * 109.44411 * 172.37260 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9815 0.4348 -1.2293 6 8 4.3214 1.0435 -2.2208 7 8 4.0023 -0.9081 -1.2256 8 6 4.4125 -1.5175 -2.3573 9 1 4.7055 -0.9271 -3.2128 10 6 4.4587 -2.9028 -2.4218 11 7 4.1034 -3.6214 -1.3801 12 14 5.0259 -3.7464 -3.9890 13 1 6.4153 -3.3262 -4.3023 14 1 4.9840 -5.2190 -3.8014 15 1 4.1287 -3.3648 -5.1090 16 6 4.1598 2.5848 0.0000 17 7 3.8638 3.2245 1.2917 18 6 3.3356 4.4632 1.3476 19 8 3.0971 5.0689 0.3216 20 8 3.0675 5.0274 2.5402 21 6 2.4989 6.3634 2.5245 22 6 1.1674 6.3421 1.7710 23 6 2.2640 6.8347 3.9610 24 6 3.4656 7.3209 1.8248 25 6 4.1673 2.4742 2.5207 26 6 3.5376 1.0775 2.3972 27 8 3.9591 0.4800 1.1688 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6886 1.8464 0.8901 32 1 1.6885 1.8466 -0.8899 33 1 4.1354 -4.5898 -1.4253 34 1 3.7333 3.1774 -0.8094 35 1 5.2389 2.5062 -0.1320 36 1 0.4788 5.6600 2.2696 37 1 0.7404 7.3450 1.7596 38 1 1.3344 6.0063 0.7476 39 1 3.2124 6.8497 4.4981 40 1 1.8368 7.8374 3.9492 41 1 1.5752 6.1525 4.4592 42 1 3.6325 6.9850 0.8013 43 1 3.0386 8.3236 1.8126 44 1 4.4142 7.3360 2.3615 45 1 5.2472 2.3841 2.6385 46 1 3.7458 2.9936 3.3813 47 1 2.4510 1.1632 2.4063 48 1 3.8618 0.4581 3.2334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873466382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:19 Heat of formation + Delta-G solvation = -248.705012 kcal Electronic energy + Delta-G solvation = -33244.729159 eV Core-core repulsion = 28686.974433 eV Total energy + Delta-G solvation = -4557.754725 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 345.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.37571 -41.46372 -40.21878 -38.63967 -38.03853 -37.33668 -36.18405 -34.84487 -34.28309 -33.38294 -30.03138 -28.35054 -28.33920 -28.25912 -27.86326 -26.52645 -25.61287 -24.01266 -22.74537 -21.07106 -20.35430 -19.89813 -19.53045 -18.82281 -18.02919 -17.76346 -17.64921 -17.23982 -17.01031 -16.57481 -16.50400 -16.13682 -16.10769 -15.85265 -15.63576 -15.45905 -14.94431 -14.80164 -14.67696 -14.44944 -14.13290 -13.65463 -13.45779 -13.37868 -13.16845 -13.11614 -13.10645 -12.86087 -12.81793 -12.74488 -12.51104 -12.42797 -12.35651 -12.33593 -12.16119 -11.97997 -11.85278 -11.41125 -11.34799 -11.11505 -11.06270 -10.78280 -10.66793 -9.87531 -8.50311 -6.30381 0.80746 1.18460 1.34379 1.50610 1.54510 1.59549 2.06488 2.30423 2.53063 2.60242 2.86889 3.00921 3.41597 3.52423 3.74847 3.79848 3.82193 3.91054 3.96138 4.01617 4.06102 4.15824 4.24957 4.37650 4.42211 4.45061 4.51628 4.62166 4.63577 4.72351 4.75558 4.78870 4.79526 4.83222 4.86901 4.91013 5.00277 5.15623 5.18471 5.30294 5.34773 5.41226 5.81818 5.91558 6.07457 6.12169 6.57110 6.91739 7.11192 7.77248 8.69149 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.002994 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.460108 B = 9350.293207 C = 9600.270636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.053 3.947 4 C 0.138 3.862 5 C 0.411 3.589 6 O -0.576 6.576 7 O -0.204 6.204 8 C -0.427 4.427 9 H 0.082 0.918 10 C 0.000 4.000 11 N -0.891 5.891 12 Si 1.017 2.983 13 H -0.260 1.260 14 H -0.258 1.258 15 H -0.262 1.262 16 C 0.138 3.862 17 N -0.598 5.598 18 C 0.657 3.343 19 O -0.586 6.586 20 O -0.356 6.356 21 C 0.123 3.877 22 C -0.182 4.182 23 C -0.133 4.133 24 C -0.181 4.181 25 C 0.079 3.921 26 C 0.034 3.966 27 O -0.366 6.366 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.279 0.721 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.133 0.867 47 H 0.064 0.936 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.302 17.891 14.857 24.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.025 4.025 4 C 0.096 3.904 5 C 0.258 3.742 6 O -0.476 6.476 7 O -0.109 6.109 8 C -0.502 4.502 9 H 0.100 0.900 10 C -0.201 4.201 11 N -0.527 5.527 12 Si 0.835 3.165 13 H -0.184 1.184 14 H -0.182 1.182 15 H -0.186 1.186 16 C 0.015 3.985 17 N -0.339 5.339 18 C 0.413 3.587 19 O -0.477 6.477 20 O -0.270 6.270 21 C 0.087 3.913 22 C -0.239 4.239 23 C -0.190 4.190 24 C -0.238 4.238 25 C -0.043 4.043 26 C -0.043 4.043 27 O -0.285 6.285 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.122 0.878 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.111 0.889 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.121 0.879 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.151 0.849 47 H 0.083 0.917 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.146 17.726 14.451 23.682 hybrid contribution -0.041 -0.094 -1.076 1.081 sum -6.187 17.632 13.375 22.979 Atomic orbital electron populations 1.22968 0.79290 1.03819 1.00996 1.88180 1.21701 1.26161 1.95421 1.22897 0.91070 0.86378 1.02115 1.21320 0.94069 0.90871 0.84154 1.23020 0.79077 0.83100 0.88975 1.90555 1.50816 1.69779 1.36421 1.83999 1.69534 1.18511 1.38852 1.21505 1.46859 0.90601 0.91259 0.90031 1.26572 0.95559 0.95113 1.02896 1.70128 1.43922 1.07163 1.31455 0.84713 0.79262 0.77289 0.75210 1.18445 1.18166 1.18614 1.21637 1.01300 0.89813 0.85742 1.46943 1.64980 1.13941 1.08072 1.17912 0.76633 0.81450 0.82731 1.90916 1.58169 1.62972 1.35604 1.86295 1.76669 1.34540 1.29529 1.22499 0.92872 0.76727 0.99169 1.22496 0.95855 1.04212 1.01349 1.21876 1.03557 1.02666 0.90902 1.22482 0.99521 1.00249 1.01580 1.22824 1.02954 0.92108 0.86385 1.23516 0.99753 0.94337 0.86651 1.88268 1.75955 1.51053 1.13220 0.93699 0.88992 0.91591 0.89479 0.92574 0.91181 0.87766 0.89357 0.91721 0.88942 0.92377 0.90938 0.87950 0.90920 0.92425 0.88934 0.91761 0.88802 0.84930 0.91742 0.84221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.48 10.13 -139.75 -1.42 -17.90 16 3 C 0.05 1.95 4.30 71.98 0.31 2.26 16 4 C 0.14 5.75 0.84 -11.44 -0.01 5.74 16 5 C 0.41 22.51 6.45 71.24 0.46 22.97 16 6 O -0.58 -33.18 15.49 20.78 0.32 -32.85 16 7 O -0.20 -12.87 9.40 19.81 0.19 -12.68 16 8 C -0.43 -27.12 9.65 67.94 0.66 -26.46 16 9 H 0.08 5.21 6.86 -2.91 -0.02 5.19 16 10 C 0.00 0.01 5.49 84.87 0.47 0.48 16 11 N -0.89 -54.54 13.67 21.62 0.30 -54.25 16 12 Si 1.02 44.72 29.55 68.60 2.03 46.75 16 13 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 14 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 15 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 16 C 0.14 4.94 4.71 86.36 0.41 5.34 16 17 N -0.60 -16.73 2.53 -946.86 -2.40 -19.13 16 18 C 0.66 18.33 7.75 129.79 1.01 19.34 16 19 O -0.59 -19.40 11.35 19.82 0.22 -19.17 16 20 O -0.36 -7.79 8.58 -55.43 -0.48 -8.26 16 21 C 0.12 2.14 1.13 -10.79 -0.01 2.12 16 22 C -0.18 -3.24 8.37 71.98 0.60 -2.64 16 23 C -0.13 -1.33 8.85 71.98 0.64 -0.69 16 24 C -0.18 -3.24 8.37 71.98 0.60 -2.64 16 25 C 0.08 1.67 6.68 86.49 0.58 2.24 16 26 C 0.03 0.86 6.61 72.22 0.48 1.34 16 27 O -0.37 -14.63 9.91 -127.42 -1.26 -15.90 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.09 2.63 8.14 -2.39 -0.02 2.62 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.09 2.64 6.11 -2.39 -0.01 2.63 16 32 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 34 H 0.10 3.99 7.05 -2.38 -0.02 3.97 16 35 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.43 5.87 -2.39 -0.01 1.42 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 42 H 0.06 1.43 5.89 -2.39 -0.01 1.41 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.13 2.02 7.00 -2.39 -0.02 2.00 16 47 H 0.06 1.58 6.25 -2.38 -0.01 1.56 16 48 H 0.14 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -83.79 389.48 5.90 -77.90 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.97 Total: 24.09 kcal Atomic # 6 Polarization: 23.98 SS G_CDS: 7.43 Total: 31.40 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -2.10 Total: -73.38 kcal Atomic # 8 Polarization: -104.34 SS G_CDS: -2.42 Total: -106.76 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -83.79 5.90 -77.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873466382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.809 kcal (2) G-P(sol) polarization free energy of solvation -83.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -254.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -248.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds