Wall clock time and date at job start Sat Apr 11 2020 07:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36438 * 125.48870 * 2 1 4 4 C 1.34582 * 108.55498 * 179.74042 * 3 2 1 5 5 C 1.41924 * 107.33787 * 0.39883 * 4 3 2 6 6 C 1.48053 * 126.48037 * 179.86767 * 5 4 3 7 7 C 1.36688 * 126.58995 * 359.68554 * 6 5 4 8 8 C 1.41221 * 105.43072 * 179.97438 * 7 6 5 9 9 C 1.47741 * 126.34026 * 179.97438 * 8 7 6 10 10 O 1.21573 * 119.99753 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00283 * 180.26929 * 9 8 7 12 12 C 1.46500 * 120.00431 * 179.72305 * 11 9 8 13 13 H 1.09005 * 110.88671 * 31.11863 * 12 11 9 14 14 C 1.54912 * 111.00390 * 267.19926 * 12 11 9 15 15 N 1.47426 * 104.83382 * 204.91245 * 14 12 11 16 16 C 1.36935 * 125.64761 * 204.08450 * 15 14 12 17 17 H 1.07994 * 120.00183 * 0.02620 * 16 15 14 18 18 C 1.38814 * 119.99368 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00381 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99636 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47116 * 59.99692 * 20 18 16 22 22 H 1.48502 * 109.47124 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46972 * 299.99832 * 20 18 16 24 24 C 1.47021 * 108.70152 * 24.12955 * 15 14 12 25 25 C 1.54330 * 107.26978 * 358.93916 * 24 15 14 26 26 H 1.09004 * 110.86915 * 219.37142 * 25 24 15 27 27 O 1.42895 * 110.71854 * 96.17141 * 25 24 15 28 28 N 1.31820 * 107.32244 * 0.22126 * 8 7 6 29 29 N 1.28447 * 110.43697 * 359.61930 * 28 8 7 30 30 H 0.96995 * 125.00668 * 180.15656 * 29 28 8 31 31 C 1.36157 * 125.48961 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.47548 * 270.00032 * 1 2 3 33 33 H 1.08998 * 109.46625 * 30.00794 * 1 2 3 34 34 H 1.09002 * 109.46627 * 150.00227 * 1 2 3 35 35 H 1.07993 * 125.72376 * 0.02562 * 3 2 1 36 36 H 1.07999 * 126.33080 * 180.24374 * 4 3 2 37 37 H 1.07996 * 127.28317 * 359.97438 * 7 6 5 38 38 H 0.97000 * 120.00112 * 359.72743 * 11 9 8 39 39 H 1.08998 * 110.36746 * 323.75178 * 14 12 11 40 40 H 1.09007 * 110.36445 * 86.07468 * 14 12 11 41 41 H 0.97001 * 119.99582 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.88257 * 239.52605 * 24 15 14 43 43 H 1.08993 * 110.01132 * 118.42911 * 24 15 14 44 44 H 0.96709 * 114.00125 * 66.47452 * 27 25 24 45 45 H 1.07993 * 125.98043 * 359.97034 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2571 1.1109 0.0000 4 6 3.5446 0.7189 0.0058 5 6 3.5546 -0.7003 0.0001 6 6 4.7513 -1.5721 0.0007 7 6 6.0561 -1.1648 0.0008 8 6 6.8204 -2.3523 0.0020 9 6 8.2949 -2.4444 0.0020 10 8 8.9672 -1.4315 0.0004 11 7 8.8947 -3.6513 -0.0022 12 6 10.3569 -3.7427 -0.0083 13 1 10.8013 -2.8975 0.5174 14 6 10.9007 -3.8457 -1.4552 15 7 12.2035 -4.5226 -1.3214 16 6 13.2442 -4.4328 -2.2068 17 1 13.1475 -3.8245 -3.0939 18 6 14.4236 -5.1235 -1.9640 19 7 14.5416 -5.8644 -0.8826 20 14 15.8436 -5.0004 -3.1715 21 1 16.2745 -3.5840 -3.2861 22 1 16.9787 -5.8260 -2.6865 23 1 15.4061 -5.4939 -4.5020 24 6 12.1999 -5.3110 -0.0804 25 6 10.8326 -5.0884 0.5998 26 1 10.9457 -5.0046 1.6807 27 8 9.9256 -6.1417 0.2684 28 7 5.9746 -3.3634 -0.0023 29 7 4.7636 -2.9352 0.0020 30 1 3.9742 -3.4987 0.0022 31 6 2.2555 -1.1086 0.0005 32 1 -0.3634 0.0000 1.0276 33 1 -0.3632 0.8899 -0.5140 34 1 -0.3633 -0.8900 -0.5138 35 1 1.9093 2.1333 0.0004 36 1 4.4101 1.3649 0.0110 37 1 6.4245 -0.1496 0.0000 38 1 8.3584 -4.4595 -0.0012 39 1 10.2264 -4.4393 -2.0725 40 1 11.0318 -2.8517 -1.8829 41 1 15.3659 -6.3468 -0.7128 42 1 13.0005 -4.9715 0.5768 43 1 12.3320 -6.3683 -0.3098 44 1 10.1777 -7.0046 0.6249 45 1 1.9123 -2.1326 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083515545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:08 Heat of formation + Delta-G solvation = 77.481712 kcal Electronic energy + Delta-G solvation = -28899.940544 eV Core-core repulsion = 24728.224759 eV Total energy + Delta-G solvation = -4171.715786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.59656 -41.39156 -39.28663 -37.65955 -34.73330 -33.98760 -33.72561 -32.07379 -31.40682 -30.93379 -28.94496 -28.34328 -27.01936 -26.60702 -24.69233 -23.48848 -22.38351 -20.94215 -20.39978 -20.24319 -19.95046 -19.50252 -18.45870 -17.37905 -16.88702 -16.64148 -16.24726 -15.90408 -15.54268 -15.15875 -14.69813 -14.57151 -14.15503 -13.97654 -13.83816 -13.79968 -13.45612 -13.26452 -13.01565 -12.94510 -12.85937 -12.59878 -12.48887 -12.31481 -12.08759 -11.19478 -10.89756 -10.87918 -10.77025 -10.41811 -10.36783 -10.11849 -10.09708 -9.78233 -9.72178 -9.36377 -9.20886 -8.80913 -8.59981 -8.49500 -8.07890 -6.78959 -5.67252 -2.99767 1.26455 1.78406 2.05154 2.41440 2.72205 3.06851 3.45609 3.48047 3.50120 3.53213 3.69749 4.17140 4.42863 4.45852 4.55672 4.57129 4.65048 4.69995 4.76801 4.81454 4.97078 5.36892 5.41719 5.47601 5.51457 5.61355 5.68482 5.72764 5.82317 5.98417 6.01584 6.19569 6.33723 6.38450 6.42955 6.66725 6.73757 6.77236 6.82779 6.90803 7.07427 7.42836 7.53116 7.75109 7.81034 8.07252 8.19337 8.27900 8.60103 9.25747 9.85925 10.51143 11.44969 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.028755 B = 0.001839 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.504266 B =15223.944351 C =15736.643399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.448 5.448 3 C -0.012 4.012 4 C -0.167 4.167 5 C -0.105 4.105 6 C 0.093 3.907 7 C -0.166 4.166 8 C -0.002 4.002 9 C 0.598 3.402 10 O -0.536 6.536 11 N -0.694 5.694 12 C 0.138 3.862 13 H 0.107 0.893 14 C 0.131 3.869 15 N -0.600 5.600 16 C -0.223 4.223 17 H 0.079 0.921 18 C -0.010 4.010 19 N -0.927 5.927 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.155 3.845 25 C 0.068 3.932 26 H 0.061 0.939 27 O -0.566 6.566 28 N -0.255 5.255 29 N -0.386 5.386 30 H 0.441 0.559 31 C -0.004 4.004 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.167 0.833 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.413 0.587 39 H 0.027 0.973 40 H 0.045 0.955 41 H 0.252 0.748 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.378 0.622 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.383 8.646 5.717 33.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.123 5.123 3 C -0.141 4.141 4 C -0.192 4.192 5 C -0.113 4.113 6 C -0.032 4.032 7 C -0.194 4.194 8 C -0.163 4.163 9 C 0.381 3.619 10 O -0.411 6.411 11 N -0.345 5.345 12 C 0.032 3.968 13 H 0.125 0.875 14 C 0.004 3.996 15 N -0.327 5.327 16 C -0.351 4.351 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.575 5.575 20 Si 0.745 3.255 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.030 3.970 25 C 0.008 3.992 26 H 0.079 0.921 27 O -0.372 6.372 28 N -0.091 5.091 29 N -0.101 5.101 30 H 0.285 0.715 31 C -0.136 4.136 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.184 0.816 36 H 0.163 0.837 37 H 0.180 0.820 38 H 0.250 0.750 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.226 0.774 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -31.317 8.627 5.387 32.927 hybrid contribution 0.334 -0.359 -0.329 0.591 sum -30.982 8.268 5.058 32.463 Atomic orbital electron populations 1.22072 0.76825 1.04589 1.03445 1.43856 1.06394 1.05952 1.56070 1.21807 0.90150 0.91566 1.10583 1.20883 0.96444 0.93251 1.08595 1.17274 0.88878 0.92831 1.12358 1.19181 0.93910 0.83096 1.06965 1.21592 0.89794 0.99630 1.08403 1.21883 0.94215 0.90589 1.09574 1.16943 0.84242 0.83990 0.76691 1.90796 1.64102 1.35470 1.50751 1.45627 1.07712 1.08095 1.73028 1.22391 0.78684 0.96695 0.99011 0.87527 1.21847 0.88271 0.96342 0.93180 1.44266 1.10819 1.53976 1.23658 1.19060 0.90948 1.24208 1.00868 0.90305 1.24785 0.98041 0.99676 0.98092 1.69909 1.26530 1.34545 1.26564 0.86150 0.81734 0.77433 0.80174 1.21115 1.21643 1.21225 1.21850 0.90318 0.97052 0.87827 1.23519 0.91810 0.86656 0.97258 0.92120 1.86277 1.51313 1.19867 1.79736 1.73513 0.89774 1.26530 1.19241 1.43430 1.06650 1.05273 1.54713 0.71468 1.21723 0.89654 0.91671 1.10592 0.90718 0.89576 0.89765 0.81575 0.83666 0.81966 0.75049 0.95552 0.93654 0.93746 0.92661 0.92940 0.77427 0.82097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.13 11.10 59.85 0.66 0.79 16 2 N -0.45 -2.52 3.14 -124.25 -0.39 -2.91 16 3 C -0.01 -0.08 11.40 -16.80 -0.19 -0.27 16 4 C -0.17 -1.42 10.65 -39.47 -0.42 -1.84 16 5 C -0.10 -0.97 6.12 -105.20 -0.64 -1.61 16 6 C 0.09 1.04 7.13 -82.41 -0.59 0.45 16 7 C -0.17 -2.27 10.57 -39.01 -0.41 -2.68 16 8 C 0.00 -0.03 7.11 -82.86 -0.59 -0.62 16 9 C 0.60 10.91 7.83 -12.38 -0.10 10.82 16 10 O -0.54 -11.28 16.56 5.30 0.09 -11.19 16 11 N -0.69 -12.39 5.16 -52.70 -0.27 -12.66 16 12 C 0.14 2.77 3.31 -65.78 -0.22 2.55 16 13 H 0.11 2.23 7.54 -51.93 -0.39 1.84 16 14 C 0.13 3.04 6.92 -2.53 -0.02 3.02 16 15 N -0.60 -16.01 3.39 -170.07 -0.58 -16.59 16 16 C -0.22 -6.44 10.28 -15.06 -0.15 -6.59 16 17 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 19 N -0.93 -27.37 10.31 55.49 0.57 -26.80 16 20 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C 0.16 3.76 5.14 -3.06 -0.02 3.75 16 25 C 0.07 1.29 4.20 -24.90 -0.10 1.19 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 O -0.57 -9.77 12.14 -35.23 -0.43 -10.20 16 28 N -0.25 -3.48 11.89 33.37 0.40 -3.09 16 29 N -0.39 -3.96 6.90 33.32 0.23 -3.73 16 30 H 0.44 2.75 8.96 -190.46 -1.71 1.04 16 31 C 0.00 -0.03 11.40 -16.37 -0.19 -0.21 16 32 H 0.07 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 34 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 35 H 0.17 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.15 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.16 2.09 8.06 -52.49 -0.42 1.66 16 38 H 0.41 6.98 7.30 -40.82 -0.30 6.69 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 1.08 8.14 -51.92 -0.42 0.66 16 41 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.06 1.46 7.38 -51.93 -0.38 1.08 16 43 H 0.05 1.38 7.43 -51.93 -0.39 1.00 16 44 H 0.38 5.07 9.12 45.56 0.42 5.49 16 45 H 0.16 0.61 8.06 -52.49 -0.42 0.18 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -37.17 383.95 -9.21 -46.38 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.52 Total: 9.01 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -3.07 Total: 8.36 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: -0.04 Total: -65.78 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.34 Total: -21.39 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -37.17 -9.21 -46.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083515545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.863 kcal (2) G-P(sol) polarization free energy of solvation -37.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds