Wall clock time and date at job start Sat Apr 11 2020 07:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36438 * 125.48870 * 2 1 4 4 C 1.34582 * 108.55498 * 179.74042 * 3 2 1 5 5 C 1.41924 * 107.33787 * 0.39883 * 4 3 2 6 6 C 1.48053 * 126.48037 * 179.86767 * 5 4 3 7 7 C 1.36688 * 126.58995 * 359.68554 * 6 5 4 8 8 C 1.41221 * 105.43072 * 179.97438 * 7 6 5 9 9 C 1.47741 * 126.34026 * 179.97438 * 8 7 6 10 10 O 1.21573 * 119.99753 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00283 * 180.26929 * 9 8 7 12 12 C 1.46500 * 120.00431 * 179.72305 * 11 9 8 13 13 H 1.09005 * 110.88671 * 31.11863 * 12 11 9 14 14 C 1.54912 * 111.00390 * 267.19926 * 12 11 9 15 15 N 1.47426 * 104.83382 * 204.91245 * 14 12 11 16 16 C 1.36935 * 125.64761 * 204.08450 * 15 14 12 17 17 H 1.07994 * 120.00183 * 0.02620 * 16 15 14 18 18 C 1.38814 * 119.99368 * 180.02562 * 16 15 14 19 19 N 1.31619 * 120.00381 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99636 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47116 * 59.99692 * 20 18 16 22 22 H 1.48502 * 109.47124 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46972 * 299.99832 * 20 18 16 24 24 C 1.47021 * 108.70152 * 24.12955 * 15 14 12 25 25 C 1.54330 * 107.26978 * 358.93916 * 24 15 14 26 26 H 1.09004 * 110.86915 * 219.37142 * 25 24 15 27 27 O 1.42895 * 110.71854 * 96.17141 * 25 24 15 28 28 N 1.31820 * 107.32244 * 0.22126 * 8 7 6 29 29 N 1.28447 * 110.43697 * 359.61930 * 28 8 7 30 30 H 0.96995 * 125.00668 * 180.15656 * 29 28 8 31 31 C 1.36157 * 125.48961 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.47548 * 270.00032 * 1 2 3 33 33 H 1.08998 * 109.46625 * 30.00794 * 1 2 3 34 34 H 1.09002 * 109.46627 * 150.00227 * 1 2 3 35 35 H 1.07993 * 125.72376 * 0.02562 * 3 2 1 36 36 H 1.07999 * 126.33080 * 180.24374 * 4 3 2 37 37 H 1.07996 * 127.28317 * 359.97438 * 7 6 5 38 38 H 0.97000 * 120.00112 * 359.72743 * 11 9 8 39 39 H 1.08998 * 110.36746 * 323.75178 * 14 12 11 40 40 H 1.09007 * 110.36445 * 86.07468 * 14 12 11 41 41 H 0.97001 * 119.99582 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.88257 * 239.52605 * 24 15 14 43 43 H 1.08993 * 110.01132 * 118.42911 * 24 15 14 44 44 H 0.96709 * 114.00125 * 66.47452 * 27 25 24 45 45 H 1.07993 * 125.98043 * 359.97034 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2571 1.1109 0.0000 4 6 3.5446 0.7189 0.0058 5 6 3.5546 -0.7003 0.0001 6 6 4.7513 -1.5721 0.0007 7 6 6.0561 -1.1648 0.0008 8 6 6.8204 -2.3523 0.0020 9 6 8.2949 -2.4444 0.0020 10 8 8.9672 -1.4315 0.0004 11 7 8.8947 -3.6513 -0.0022 12 6 10.3569 -3.7427 -0.0083 13 1 10.8013 -2.8975 0.5174 14 6 10.9007 -3.8457 -1.4552 15 7 12.2035 -4.5226 -1.3214 16 6 13.2442 -4.4328 -2.2068 17 1 13.1475 -3.8245 -3.0939 18 6 14.4236 -5.1235 -1.9640 19 7 14.5416 -5.8644 -0.8826 20 14 15.8436 -5.0004 -3.1715 21 1 16.2745 -3.5840 -3.2861 22 1 16.9787 -5.8260 -2.6865 23 1 15.4061 -5.4939 -4.5020 24 6 12.1999 -5.3110 -0.0804 25 6 10.8326 -5.0884 0.5998 26 1 10.9457 -5.0046 1.6807 27 8 9.9256 -6.1417 0.2684 28 7 5.9746 -3.3634 -0.0023 29 7 4.7636 -2.9352 0.0020 30 1 3.9742 -3.4987 0.0022 31 6 2.2555 -1.1086 0.0005 32 1 -0.3634 0.0000 1.0276 33 1 -0.3632 0.8899 -0.5140 34 1 -0.3633 -0.8900 -0.5138 35 1 1.9093 2.1333 0.0004 36 1 4.4101 1.3649 0.0110 37 1 6.4245 -0.1496 0.0000 38 1 8.3584 -4.4595 -0.0012 39 1 10.2264 -4.4393 -2.0725 40 1 11.0318 -2.8517 -1.8829 41 1 15.3659 -6.3468 -0.7128 42 1 13.0005 -4.9715 0.5768 43 1 12.3320 -6.3683 -0.3098 44 1 10.1777 -7.0046 0.6249 45 1 1.9123 -2.1326 0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083515545.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:07 Heat of formation + Delta-G solvation = 48.483179 kcal Electronic energy + Delta-G solvation = -28901.198015 eV Core-core repulsion = 24728.224759 eV Total energy + Delta-G solvation = -4172.973256 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.55549 -41.91031 -40.84229 -39.30408 -36.45036 -35.46582 -34.41872 -33.66101 -32.85374 -31.67940 -30.30427 -29.46257 -28.77405 -27.01529 -26.58287 -24.89904 -23.20402 -22.33202 -21.78693 -21.49531 -20.94055 -20.69354 -19.17652 -19.07971 -18.33675 -18.01197 -17.17795 -16.84818 -16.79811 -16.59115 -16.05878 -15.80379 -15.52438 -15.42570 -15.00456 -14.77213 -14.67596 -14.50846 -14.31811 -14.02018 -13.90759 -13.66273 -13.30558 -13.21726 -13.16588 -12.86251 -12.80632 -12.72415 -12.27017 -12.14095 -11.99297 -11.89404 -11.84425 -11.29419 -10.88614 -10.85656 -10.74292 -10.43566 -10.05206 -9.32799 -8.93449 -8.76506 -7.86579 -5.22658 0.42273 0.68550 1.46373 1.47494 1.50233 1.56282 1.80222 2.03283 2.18045 2.26313 2.45116 2.50991 3.18637 3.31988 3.35342 3.65045 3.78349 3.84884 3.96606 4.03994 4.14101 4.20480 4.26712 4.32372 4.46432 4.51859 4.57421 4.61533 4.67188 4.79547 4.84078 4.85342 5.03493 5.14621 5.32708 5.36376 5.38042 5.44680 5.49877 5.66328 5.83937 6.09871 6.15850 6.17233 6.44024 6.51224 6.87042 6.92753 7.08108 7.18169 7.71888 8.36429 9.23225 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.028755 B = 0.001839 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.504266 B =15223.944351 C =15736.643399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.445 5.445 3 C -0.008 4.008 4 C -0.197 4.197 5 C -0.144 4.144 6 C 0.119 3.881 7 C -0.194 4.194 8 C -0.027 4.027 9 C 0.598 3.402 10 O -0.571 6.571 11 N -0.684 5.684 12 C 0.149 3.851 13 H 0.098 0.902 14 C 0.132 3.868 15 N -0.620 5.620 16 C -0.249 4.249 17 H 0.077 0.923 18 C -0.060 4.060 19 N -0.948 5.948 20 Si 0.982 3.018 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.162 3.838 25 C 0.091 3.909 26 H 0.092 0.908 27 O -0.565 6.565 28 N -0.260 5.260 29 N -0.364 5.364 30 H 0.461 0.539 31 C 0.012 3.988 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.193 0.807 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.420 0.580 39 H 0.023 0.977 40 H 0.031 0.969 41 H 0.250 0.750 42 H 0.027 0.973 43 H 0.028 0.972 44 H 0.398 0.602 45 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.787 8.458 5.873 36.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.119 5.119 3 C -0.138 4.138 4 C -0.222 4.222 5 C -0.153 4.153 6 C -0.007 4.007 7 C -0.222 4.222 8 C -0.186 4.186 9 C 0.384 3.616 10 O -0.449 6.449 11 N -0.335 5.335 12 C 0.042 3.958 13 H 0.116 0.884 14 C 0.005 3.995 15 N -0.347 5.347 16 C -0.378 4.378 17 H 0.095 0.905 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.809 3.191 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.204 1.204 24 C 0.036 3.964 25 C 0.031 3.969 26 H 0.110 0.890 27 O -0.374 6.374 28 N -0.097 5.097 29 N -0.081 5.081 30 H 0.309 0.691 31 C -0.123 4.123 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.210 0.790 36 H 0.156 0.844 37 H 0.176 0.824 38 H 0.258 0.742 39 H 0.041 0.959 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.046 0.954 44 H 0.249 0.751 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -34.792 8.408 5.551 36.221 hybrid contribution 1.169 -0.268 -0.396 1.263 sum -33.623 8.140 5.155 34.976 Atomic orbital electron populations 1.22391 0.74233 1.06212 1.04709 1.44207 1.07962 1.05339 1.54357 1.22184 0.89561 0.92977 1.09050 1.21053 0.97549 0.93341 1.10228 1.17353 0.89239 0.92934 1.15766 1.19313 0.93798 0.83353 1.04244 1.21657 0.90921 0.99191 1.10480 1.21485 0.92895 0.91908 1.12309 1.17302 0.85456 0.83322 0.75534 1.90766 1.65298 1.36522 1.52326 1.45460 1.06569 1.08488 1.72989 1.22048 0.80010 0.97078 0.96627 0.88443 1.21863 0.87186 0.95078 0.95324 1.44536 1.11420 1.54663 1.24078 1.19399 0.92183 1.24605 1.01583 0.90512 1.25627 1.00376 0.99414 0.99952 1.70109 1.26827 1.34860 1.27836 0.85111 0.78333 0.77504 0.78105 1.20466 1.21440 1.20449 1.21708 0.92711 0.95079 0.86881 1.23168 0.88965 0.86625 0.98136 0.88987 1.86241 1.50282 1.20709 1.80134 1.73422 0.90670 1.26073 1.19535 1.43457 1.06420 1.05416 1.52837 0.69090 1.22178 0.88846 0.93308 1.07929 0.89576 0.88102 0.88173 0.79010 0.84399 0.82430 0.74207 0.95926 0.95036 0.94095 0.95460 0.95376 0.75123 0.79003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.03 11.10 127.77 1.42 1.39 16 2 N -0.44 -3.55 3.14 -547.02 -1.72 -5.27 16 3 C -0.01 -0.09 11.40 83.14 0.95 0.86 16 4 C -0.20 -3.23 10.65 22.34 0.24 -2.99 16 5 C -0.14 -2.46 6.12 -20.24 -0.12 -2.58 16 6 C 0.12 2.55 7.13 40.69 0.29 2.84 16 7 C -0.19 -5.45 10.57 22.64 0.24 -5.21 16 8 C -0.03 -0.85 7.11 42.39 0.30 -0.54 16 9 C 0.60 22.39 7.83 86.76 0.68 23.07 16 10 O -0.57 -25.06 16.56 -3.95 -0.07 -25.13 16 11 N -0.68 -24.51 5.16 -438.92 -2.27 -26.78 16 12 C 0.15 6.05 3.31 46.38 0.15 6.20 16 13 H 0.10 4.18 7.54 -2.38 -0.02 4.17 16 14 C 0.13 6.33 6.92 86.86 0.60 6.94 16 15 N -0.62 -34.07 3.39 -691.98 -2.35 -36.42 16 16 C -0.25 -14.78 10.28 84.03 0.86 -13.92 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 18 C -0.06 -3.54 5.49 84.86 0.47 -3.07 16 19 N -0.95 -57.11 10.31 21.65 0.22 -56.89 16 20 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 C 0.16 8.04 5.14 86.73 0.45 8.48 16 25 C 0.09 3.45 4.20 31.78 0.13 3.59 16 26 H 0.09 2.98 8.14 -2.38 -0.02 2.97 16 27 O -0.57 -18.67 12.14 -148.98 -1.81 -20.48 16 28 N -0.26 -6.86 11.89 -48.33 -0.57 -7.43 16 29 N -0.36 -6.82 6.90 -48.50 -0.33 -7.16 16 30 H 0.46 4.43 8.96 -220.01 -1.97 2.46 16 31 C 0.01 0.12 11.40 83.54 0.95 1.07 16 32 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 33 H 0.10 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.19 0.85 8.06 -2.91 -0.02 0.83 16 36 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 37 H 0.16 4.38 8.06 -2.91 -0.02 4.35 16 38 H 0.42 13.89 7.30 -92.71 -0.68 13.21 16 39 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 42 H 0.03 1.49 7.38 -2.39 -0.02 1.48 16 43 H 0.03 1.52 7.43 -2.39 -0.02 1.50 16 44 H 0.40 9.90 9.12 -74.05 -0.68 9.22 16 45 H 0.19 0.60 8.06 -2.91 -0.02 0.57 16 Total: -1.00 -83.23 383.95 -1.52 -84.75 By element: Atomic # 1 Polarization: 27.76 SS G_CDS: -2.26 Total: 25.50 kcal Atomic # 6 Polarization: 18.53 SS G_CDS: 7.60 Total: 26.13 kcal Atomic # 7 Polarization: -132.92 SS G_CDS: -7.02 Total: -139.94 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -1.87 Total: -45.61 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -83.23 -1.52 -84.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083515545.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.232 kcal (2) G-P(sol) polarization free energy of solvation -83.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds