Wall clock time and date at job start Sat Apr 11 2020 07:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00048 * 2 1 4 4 C 1.52995 * 109.47275 * 86.79693 * 3 2 1 5 5 H 1.09000 * 112.96183 * 294.14970 * 4 3 2 6 6 C 1.53942 * 113.77218 * 65.83000 * 4 3 2 7 7 C 1.53944 * 86.29038 * 137.90481 * 6 4 3 8 8 N 1.47582 * 113.76980 * 162.47338 * 4 3 2 9 9 C 1.36938 * 134.48988 * 41.06237 * 8 4 3 10 10 H 1.07998 * 120.00272 * 4.88044 * 9 8 4 11 11 C 1.38815 * 119.99771 * 184.87010 * 9 8 4 12 12 N 1.31614 * 119.99878 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99743 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47034 * 90.00609 * 13 11 9 15 15 H 1.48502 * 109.46932 * 210.00403 * 13 11 9 16 16 H 1.48495 * 109.47508 * 330.00270 * 13 11 9 17 17 C 1.34779 * 120.00198 * 179.97438 * 2 1 3 18 18 O 1.21667 * 120.00011 * 186.06740 * 17 2 1 19 19 C 1.46911 * 119.99889 * 6.06231 * 17 2 1 20 20 C 1.36381 * 126.75887 * 6.82441 * 19 17 2 21 21 N 1.35449 * 109.77094 * 179.97438 * 20 19 17 22 22 C 1.46507 * 124.79503 * 179.97438 * 21 20 19 23 23 C 1.38059 * 110.41483 * 359.97438 * 21 20 19 24 24 C 1.39111 * 133.15111 * 180.02562 * 23 21 20 25 25 C 1.37763 * 119.95907 * 179.97438 * 24 23 21 26 26 C 1.38948 * 120.60650 * 359.97438 * 25 24 23 27 27 F 1.35103 * 119.87173 * 180.02562 * 26 25 24 28 28 C 1.37949 * 120.25014 * 359.97438 * 26 25 24 29 29 C 1.39285 * 119.65238 * 359.78243 * 28 26 25 30 30 H 1.08998 * 109.47044 * 95.36115 * 1 2 3 31 31 H 1.09008 * 109.46976 * 215.35725 * 1 2 3 32 32 H 1.09001 * 109.47129 * 335.35651 * 1 2 3 33 33 H 1.09000 * 109.46907 * 326.79663 * 3 2 1 34 34 H 1.09007 * 109.46782 * 206.80036 * 3 2 1 35 35 H 1.09002 * 113.74521 * 252.25748 * 6 4 3 36 36 H 1.09004 * 113.73866 * 23.45133 * 6 4 3 37 37 H 1.08999 * 113.76523 * 90.70042 * 7 6 4 38 38 H 1.09007 * 113.77047 * 221.97782 * 7 6 4 39 39 H 0.97007 * 119.99676 * 179.97438 * 12 11 9 40 40 H 1.08004 * 125.11918 * 359.97438 * 20 19 17 41 41 H 1.08998 * 109.46653 * 89.97230 * 22 21 20 42 42 H 1.09003 * 109.46925 * 209.97362 * 22 21 20 43 43 H 1.09000 * 109.46563 * 329.97502 * 22 21 20 44 44 H 1.07990 * 120.02156 * 0.02562 * 24 23 21 45 45 H 1.08000 * 119.69293 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.17106 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3827 1.7507 1.4402 5 1 1.4421 2.0104 1.9260 6 6 3.2880 0.8389 2.2881 7 6 3.9076 2.1356 2.8401 8 7 3.4343 2.7746 1.5942 9 6 3.8170 3.8734 0.8721 10 1 3.2427 4.1801 0.0104 11 6 4.9429 4.5932 1.2478 12 7 5.6429 4.2192 2.2977 13 14 5.4645 6.0924 0.2631 14 1 4.8098 7.3031 0.8207 15 1 6.9394 6.2471 0.3408 16 1 5.0590 5.9191 -1.1549 17 6 2.1389 -1.1672 0.0005 18 8 3.3505 -1.1701 0.1119 19 6 1.4105 -2.4360 -0.1333 20 6 0.0808 -2.5902 -0.3943 21 7 -0.2263 -3.9084 -0.4452 22 6 -1.5644 -4.4457 -0.7045 23 6 0.8998 -4.6743 -0.2183 24 6 1.1222 -6.0465 -0.1651 25 6 2.3878 -6.5290 0.0868 26 6 3.4502 -5.6567 0.2890 27 9 4.6853 -6.1460 0.5345 28 6 3.2488 -4.2929 0.2390 29 6 1.9747 -3.7935 -0.0200 30 1 -0.3633 -0.0960 -1.0232 31 1 -0.3633 -0.8382 0.5947 32 1 -0.3633 0.9341 0.4285 33 1 1.6345 2.0133 -0.5628 34 1 3.1736 1.1247 -0.4634 35 1 2.7484 0.2574 3.0357 36 1 3.9792 0.2364 1.6989 37 1 3.4159 2.5099 3.7380 38 1 4.9930 2.0988 2.9336 39 1 6.4300 4.7220 2.5600 40 1 -0.6217 -1.7827 -0.5386 41 1 -1.6980 -4.5857 -1.7771 42 1 -1.6760 -5.4035 -0.1963 43 1 -2.3144 -3.7475 -0.3329 44 1 0.3036 -6.7330 -0.3221 45 1 2.5555 -7.5951 0.1275 46 1 4.0757 -3.6160 0.3959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085643363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:27 Heat of formation + Delta-G solvation = 69.316655 kcal Electronic energy + Delta-G solvation = -30114.247239 eV Core-core repulsion = 25922.257428 eV Total energy + Delta-G solvation = -4191.989811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.82866 -41.84240 -39.40786 -37.44698 -37.15986 -35.16806 -33.26953 -32.04345 -30.37646 -29.89494 -28.19588 -27.70369 -27.17503 -26.21369 -23.24727 -23.24046 -22.94630 -21.70679 -21.16750 -19.31689 -18.83569 -17.63058 -17.36801 -16.89964 -16.58439 -16.03425 -15.80428 -15.54907 -15.43010 -15.24347 -15.18657 -14.54188 -14.23489 -13.92369 -13.49025 -13.47469 -13.39389 -13.28669 -13.12734 -13.08974 -12.79154 -12.62595 -12.22983 -12.17990 -11.58876 -11.35148 -11.24098 -11.16362 -10.91643 -10.75757 -10.55156 -10.36762 -9.89307 -9.73715 -9.58296 -9.52358 -9.39122 -8.65701 -8.45424 -8.26378 -7.90525 -6.73502 -5.63915 -2.97204 0.67022 1.14589 1.84932 2.31931 3.20094 3.32831 3.45351 3.49741 3.52428 3.75183 4.10990 4.22585 4.26474 4.43009 4.54600 4.63769 4.67817 4.85118 4.92645 4.99115 5.05873 5.12168 5.22586 5.32610 5.35991 5.45573 5.55373 5.57133 5.72002 5.74388 5.96431 6.01168 6.05406 6.07826 6.23660 6.33598 6.42566 6.53321 6.70830 6.77988 6.83147 6.84569 6.89920 6.98885 7.41199 7.63351 7.72873 7.77111 8.12279 8.57030 9.15354 9.82798 10.74830 11.52211 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.002697 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.178484 B =10378.937848 C =11554.999757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.607 5.607 3 C 0.120 3.880 4 C 0.128 3.872 5 H 0.039 0.961 6 C -0.156 4.156 7 C 0.154 3.846 8 N -0.600 5.600 9 C -0.221 4.221 10 H 0.077 0.923 11 C -0.008 4.008 12 N -0.918 5.918 13 Si 0.909 3.091 14 H -0.291 1.291 15 H -0.291 1.291 16 H -0.281 1.281 17 C 0.583 3.417 18 O -0.524 6.524 19 C -0.214 4.214 20 C 0.087 3.913 21 N -0.475 5.475 22 C 0.074 3.926 23 C 0.075 3.925 24 C -0.098 4.098 25 C -0.133 4.133 26 C 0.074 3.926 27 F -0.140 7.140 28 C -0.093 4.093 29 C -0.038 4.038 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.038 0.962 36 H 0.092 0.908 37 H 0.019 0.981 38 H 0.076 0.924 39 H 0.252 0.748 40 H 0.199 0.801 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.129 0.871 45 H 0.138 0.862 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.953 -22.199 -6.191 29.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.341 5.341 3 C -0.003 4.003 4 C 0.020 3.980 5 H 0.056 0.944 6 C -0.194 4.194 7 C 0.029 3.971 8 N -0.327 5.327 9 C -0.349 4.349 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.565 5.565 13 Si 0.740 3.260 14 H -0.218 1.218 15 H -0.217 1.217 16 H -0.207 1.207 17 C 0.372 3.628 18 O -0.401 6.401 19 C -0.225 4.225 20 C -0.043 4.043 21 N -0.156 5.156 22 C -0.068 4.068 23 C -0.029 4.029 24 C -0.119 4.119 25 C -0.153 4.153 26 C 0.053 3.947 27 F -0.119 7.119 28 C -0.112 4.112 29 C -0.043 4.043 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.057 0.943 36 H 0.111 0.889 37 H 0.037 0.963 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.215 0.785 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.147 0.853 45 H 0.156 0.844 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.351 -22.039 -6.265 29.355 hybrid contribution 0.139 0.956 -0.375 1.036 sum -18.212 -21.083 -6.640 28.640 Atomic orbital electron populations 1.22267 0.81246 1.03680 1.00736 1.47609 1.06073 1.06429 1.73986 1.21835 0.97504 0.82080 0.98871 1.22516 0.92876 0.89449 0.93125 0.94419 1.23834 0.99440 0.97253 0.98847 1.22314 1.00007 0.86620 0.88154 1.45945 1.33627 1.28519 1.24576 1.18966 1.06952 1.01898 1.07080 0.90544 1.24774 0.97701 0.99650 0.98306 1.69835 1.18978 1.40893 1.26812 0.86166 0.77755 0.82749 0.79355 1.21813 1.21681 1.20670 1.17149 0.86769 0.82060 0.76810 1.90799 1.13487 1.86613 1.49204 1.20117 0.92847 0.92523 1.16986 1.23375 0.96780 0.85438 0.98708 1.43693 1.07666 1.05063 1.59214 1.22069 0.80956 1.01062 1.02674 1.18274 0.86186 0.92766 1.05692 1.19753 0.97050 0.91037 1.04027 1.20749 0.91363 0.99908 1.03273 1.17367 0.80316 0.91733 1.05238 1.91496 1.40023 1.88253 1.92126 1.20662 0.97557 0.93448 0.99571 1.18427 0.92055 0.91322 1.02450 0.92645 0.90708 0.90347 0.91495 0.88933 0.94298 0.88911 0.96296 0.90577 0.93772 0.78514 0.90747 0.89728 0.89378 0.85294 0.84418 0.83342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.58 8.68 59.85 0.52 1.10 16 2 N -0.61 -8.96 2.81 -183.04 -0.52 -9.47 16 3 C 0.12 2.22 5.35 -4.04 -0.02 2.19 16 4 C 0.13 2.73 4.57 -66.87 -0.31 2.42 16 5 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.16 -3.42 7.11 -25.80 -0.18 -3.60 16 7 C 0.15 3.96 7.65 -2.85 -0.02 3.94 16 8 N -0.60 -15.99 3.58 -169.74 -0.61 -16.60 16 9 C -0.22 -6.33 10.51 -15.06 -0.16 -6.49 16 10 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 11 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 12 N -0.92 -28.33 11.32 55.49 0.63 -27.71 16 13 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 14 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.58 9.65 7.27 -12.75 -0.09 9.56 16 18 O -0.52 -10.88 13.58 5.22 0.07 -10.81 16 19 C -0.21 -2.86 6.11 -103.31 -0.63 -3.49 16 20 C 0.09 0.78 9.23 -16.62 -0.15 0.62 16 21 N -0.47 -3.76 3.15 -121.57 -0.38 -4.14 16 22 C 0.07 0.23 10.99 59.85 0.66 0.89 16 23 C 0.07 0.78 6.79 -83.93 -0.57 0.21 16 24 C -0.10 -0.84 9.91 -39.43 -0.39 -1.23 16 25 C -0.13 -1.27 9.99 -39.49 -0.39 -1.67 16 26 C 0.07 0.92 7.29 -39.42 -0.29 0.64 16 27 F -0.14 -1.88 17.26 2.25 0.04 -1.84 16 28 C -0.09 -1.33 9.83 -39.30 -0.39 -1.72 16 29 C -0.04 -0.52 6.27 -104.96 -0.66 -1.17 16 30 H 0.06 0.37 7.40 -51.93 -0.38 -0.02 16 31 H 0.07 0.55 5.29 -51.92 -0.27 0.27 16 32 H 0.08 0.69 8.03 -51.93 -0.42 0.27 16 33 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 34 H 0.09 2.02 7.42 -51.93 -0.39 1.64 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 2.21 6.14 -51.93 -0.32 1.89 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 2.17 6.97 -51.92 -0.36 1.80 16 39 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.20 1.08 4.29 -52.48 -0.23 0.85 16 41 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 42 H 0.08 0.18 8.03 -51.93 -0.42 -0.24 16 43 H 0.09 0.11 8.13 -51.93 -0.42 -0.31 16 44 H 0.13 0.67 8.01 -52.49 -0.42 0.25 16 45 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.15 2.38 7.47 -52.49 -0.39 1.98 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -37.04 377.67 -9.37 -46.41 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -6.10 Total: -1.14 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -3.17 Total: 1.89 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.88 Total: -57.92 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.04 -9.37 -46.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.725 kcal (2) G-P(sol) polarization free energy of solvation -37.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds