Wall clock time and date at job start Sat Apr 11 2020 07:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00048 * 2 1 4 4 C 1.52995 * 109.47275 * 86.79693 * 3 2 1 5 5 H 1.09000 * 112.96183 * 294.14970 * 4 3 2 6 6 C 1.53942 * 113.77218 * 65.83000 * 4 3 2 7 7 C 1.53944 * 86.29038 * 137.90481 * 6 4 3 8 8 N 1.47582 * 113.76980 * 162.47338 * 4 3 2 9 9 C 1.36938 * 134.48988 * 41.06237 * 8 4 3 10 10 H 1.07998 * 120.00272 * 4.88044 * 9 8 4 11 11 C 1.38815 * 119.99771 * 184.87010 * 9 8 4 12 12 N 1.31614 * 119.99878 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99743 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47034 * 90.00609 * 13 11 9 15 15 H 1.48502 * 109.46932 * 210.00403 * 13 11 9 16 16 H 1.48495 * 109.47508 * 330.00270 * 13 11 9 17 17 C 1.34779 * 120.00198 * 179.97438 * 2 1 3 18 18 O 1.21667 * 120.00011 * 186.06740 * 17 2 1 19 19 C 1.46911 * 119.99889 * 6.06231 * 17 2 1 20 20 C 1.36381 * 126.75887 * 6.82441 * 19 17 2 21 21 N 1.35449 * 109.77094 * 179.97438 * 20 19 17 22 22 C 1.46507 * 124.79503 * 179.97438 * 21 20 19 23 23 C 1.38059 * 110.41483 * 359.97438 * 21 20 19 24 24 C 1.39111 * 133.15111 * 180.02562 * 23 21 20 25 25 C 1.37763 * 119.95907 * 179.97438 * 24 23 21 26 26 C 1.38948 * 120.60650 * 359.97438 * 25 24 23 27 27 F 1.35103 * 119.87173 * 180.02562 * 26 25 24 28 28 C 1.37949 * 120.25014 * 359.97438 * 26 25 24 29 29 C 1.39285 * 119.65238 * 359.78243 * 28 26 25 30 30 H 1.08998 * 109.47044 * 95.36115 * 1 2 3 31 31 H 1.09008 * 109.46976 * 215.35725 * 1 2 3 32 32 H 1.09001 * 109.47129 * 335.35651 * 1 2 3 33 33 H 1.09000 * 109.46907 * 326.79663 * 3 2 1 34 34 H 1.09007 * 109.46782 * 206.80036 * 3 2 1 35 35 H 1.09002 * 113.74521 * 252.25748 * 6 4 3 36 36 H 1.09004 * 113.73866 * 23.45133 * 6 4 3 37 37 H 1.08999 * 113.76523 * 90.70042 * 7 6 4 38 38 H 1.09007 * 113.77047 * 221.97782 * 7 6 4 39 39 H 0.97007 * 119.99676 * 179.97438 * 12 11 9 40 40 H 1.08004 * 125.11918 * 359.97438 * 20 19 17 41 41 H 1.08998 * 109.46653 * 89.97230 * 22 21 20 42 42 H 1.09003 * 109.46925 * 209.97362 * 22 21 20 43 43 H 1.09000 * 109.46563 * 329.97502 * 22 21 20 44 44 H 1.07990 * 120.02156 * 0.02562 * 24 23 21 45 45 H 1.08000 * 119.69293 * 179.97438 * 25 24 23 46 46 H 1.08002 * 120.17106 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3827 1.7507 1.4402 5 1 1.4421 2.0104 1.9260 6 6 3.2880 0.8389 2.2881 7 6 3.9076 2.1356 2.8401 8 7 3.4343 2.7746 1.5942 9 6 3.8170 3.8734 0.8721 10 1 3.2427 4.1801 0.0104 11 6 4.9429 4.5932 1.2478 12 7 5.6429 4.2192 2.2977 13 14 5.4645 6.0924 0.2631 14 1 4.8098 7.3031 0.8207 15 1 6.9394 6.2471 0.3408 16 1 5.0590 5.9191 -1.1549 17 6 2.1389 -1.1672 0.0005 18 8 3.3505 -1.1701 0.1119 19 6 1.4105 -2.4360 -0.1333 20 6 0.0808 -2.5902 -0.3943 21 7 -0.2263 -3.9084 -0.4452 22 6 -1.5644 -4.4457 -0.7045 23 6 0.8998 -4.6743 -0.2183 24 6 1.1222 -6.0465 -0.1651 25 6 2.3878 -6.5290 0.0868 26 6 3.4502 -5.6567 0.2890 27 9 4.6853 -6.1460 0.5345 28 6 3.2488 -4.2929 0.2390 29 6 1.9747 -3.7935 -0.0200 30 1 -0.3633 -0.0960 -1.0232 31 1 -0.3633 -0.8382 0.5947 32 1 -0.3633 0.9341 0.4285 33 1 1.6345 2.0133 -0.5628 34 1 3.1736 1.1247 -0.4634 35 1 2.7484 0.2574 3.0357 36 1 3.9792 0.2364 1.6989 37 1 3.4159 2.5099 3.7380 38 1 4.9930 2.0988 2.9336 39 1 6.4300 4.7220 2.5600 40 1 -0.6217 -1.7827 -0.5386 41 1 -1.6980 -4.5857 -1.7771 42 1 -1.6760 -5.4035 -0.1963 43 1 -2.3144 -3.7475 -0.3329 44 1 0.3036 -6.7330 -0.3221 45 1 2.5555 -7.5951 0.1275 46 1 4.0757 -3.6160 0.3959 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085643363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:26 Heat of formation + Delta-G solvation = 45.471971 kcal Electronic energy + Delta-G solvation = -30115.281222 eV Core-core repulsion = 25922.257428 eV Total energy + Delta-G solvation = -4193.023794 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.84539 -42.62338 -40.72279 -39.20706 -37.95475 -36.40057 -34.29643 -33.90970 -31.19316 -30.89890 -29.84222 -29.27389 -27.97921 -27.08725 -25.28812 -24.44247 -24.03279 -22.84712 -22.04226 -20.80367 -20.32078 -18.71975 -18.45784 -18.24510 -17.71452 -17.17335 -16.97687 -16.70142 -16.42071 -16.39205 -16.14920 -15.99053 -15.79344 -15.11404 -15.04262 -14.63281 -14.27915 -14.12739 -14.06146 -13.89814 -13.77145 -13.68520 -13.52508 -13.34298 -13.11859 -12.92600 -12.55862 -12.49573 -12.37013 -12.29001 -12.00617 -11.98075 -11.77839 -11.58359 -11.27009 -10.84070 -10.78232 -10.70550 -9.58382 -9.25891 -8.87250 -8.71741 -7.85840 -5.20801 -0.15600 0.29795 0.96435 1.43854 1.47852 1.55851 1.70359 2.07163 2.36798 2.51035 2.75722 3.25602 3.33400 3.43094 3.55769 3.64053 3.78214 3.94725 4.00369 4.10207 4.26314 4.28530 4.31773 4.35962 4.46085 4.48865 4.57346 4.58448 4.65582 4.70350 4.80630 4.86439 4.86705 4.91670 4.95829 5.06387 5.11468 5.16347 5.20768 5.27581 5.44095 5.54055 5.58732 5.61792 5.81888 5.97089 6.01203 6.19976 6.58542 6.92450 7.39674 7.64161 8.61577 9.31066 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.002697 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.178484 B =10378.937848 C =11554.999757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.605 5.605 3 C 0.135 3.865 4 C 0.138 3.862 5 H 0.065 0.935 6 C -0.134 4.134 7 C 0.149 3.851 8 N -0.628 5.628 9 C -0.226 4.226 10 H 0.090 0.910 11 C -0.076 4.076 12 N -0.958 5.958 13 Si 0.980 3.020 14 H -0.283 1.283 15 H -0.299 1.299 16 H -0.265 1.265 17 C 0.575 3.425 18 O -0.589 6.589 19 C -0.269 4.269 20 C 0.133 3.867 21 N -0.461 5.461 22 C 0.061 3.939 23 C 0.070 3.930 24 C -0.073 4.073 25 C -0.135 4.135 26 C 0.061 3.939 27 F -0.153 7.153 28 C -0.135 4.135 29 C -0.067 4.067 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.021 0.979 38 H 0.036 0.964 39 H 0.245 0.755 40 H 0.241 0.759 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.116 0.884 44 H 0.178 0.822 45 H 0.169 0.831 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.937 -23.923 -7.935 35.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.337 5.337 3 C 0.011 3.989 4 C 0.032 3.968 5 H 0.083 0.917 6 C -0.173 4.173 7 C 0.024 3.976 8 N -0.355 5.355 9 C -0.354 4.354 10 H 0.108 0.892 11 C -0.268 4.268 12 N -0.608 5.608 13 Si 0.809 3.191 14 H -0.210 1.210 15 H -0.226 1.226 16 H -0.189 1.189 17 C 0.367 3.633 18 O -0.470 6.470 19 C -0.279 4.279 20 C -0.001 4.001 21 N -0.140 5.140 22 C -0.078 4.078 23 C -0.035 4.035 24 C -0.093 4.093 25 C -0.154 4.154 26 C 0.041 3.959 27 F -0.132 7.132 28 C -0.155 4.155 29 C -0.072 4.072 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.039 0.961 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.256 0.744 41 H 0.110 0.890 42 H 0.120 0.880 43 H 0.135 0.865 44 H 0.195 0.805 45 H 0.186 0.814 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -24.449 -23.814 -8.037 35.063 hybrid contribution 1.846 1.364 0.159 2.301 sum -22.603 -22.450 -7.878 32.817 Atomic orbital electron populations 1.22709 0.77222 1.05368 1.03644 1.47599 1.08386 1.04320 1.73428 1.21353 0.96568 0.84450 0.96576 1.22674 0.92338 0.86874 0.94939 0.91744 1.23529 0.99077 0.95748 0.98907 1.22224 0.97892 0.88939 0.88577 1.46270 1.35429 1.29006 1.24775 1.19450 1.06829 1.01906 1.07221 0.89212 1.25718 0.98166 1.03174 0.99757 1.70063 1.19458 1.42361 1.28887 0.85043 0.76520 0.78996 0.78586 1.21001 1.22627 1.18933 1.17754 0.86324 0.83537 0.75668 1.90769 1.16436 1.87550 1.52280 1.19875 0.94943 0.90815 1.22308 1.23850 0.95232 0.86845 0.94149 1.44082 1.08772 1.04403 1.56752 1.22575 0.78325 1.02602 1.04299 1.18455 0.86181 0.93243 1.05612 1.20264 0.97634 0.90828 1.00531 1.21084 0.90741 1.00840 1.02764 1.17701 0.80815 0.91657 1.05709 1.91451 1.41185 1.88263 1.92332 1.20502 0.97616 0.93968 1.03415 1.18716 0.92618 0.92752 1.03125 0.89022 0.88364 0.89293 0.89224 0.93507 0.91847 0.91514 0.96132 0.94546 0.94563 0.74397 0.89039 0.88012 0.86516 0.80467 0.81351 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.71 8.68 127.77 1.11 1.82 16 2 N -0.61 -17.25 2.81 -851.24 -2.40 -19.65 16 3 C 0.14 5.01 5.35 86.38 0.46 5.47 16 4 C 0.14 5.90 4.57 45.09 0.21 6.10 16 5 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 6 C -0.13 -6.18 7.11 31.25 0.22 -5.96 16 7 C 0.15 8.09 7.65 86.44 0.66 8.75 16 8 N -0.63 -34.47 3.58 -690.95 -2.48 -36.95 16 9 C -0.23 -13.18 10.51 84.03 0.88 -12.30 16 10 H 0.09 4.86 7.83 -2.91 -0.02 4.83 16 11 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 12 N -0.96 -62.09 11.32 21.65 0.25 -61.84 16 13 Si 0.98 47.95 29.55 68.60 2.03 49.98 16 14 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 15 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 16 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 17 C 0.58 19.82 7.27 86.51 0.63 20.44 16 18 O -0.59 -27.14 13.58 -4.24 -0.06 -27.19 16 19 C -0.27 -7.07 6.11 -19.01 -0.12 -7.19 16 20 C 0.13 1.81 9.23 83.70 0.77 2.58 16 21 N -0.46 -5.00 3.15 -538.55 -1.69 -6.70 16 22 C 0.06 -0.03 10.99 127.77 1.40 1.37 16 23 C 0.07 1.26 6.79 38.89 0.26 1.52 16 24 C -0.07 -0.96 9.91 22.37 0.22 -0.73 16 25 C -0.13 -2.32 9.99 22.33 0.22 -2.10 16 26 C 0.06 1.64 7.29 22.37 0.16 1.80 16 27 F -0.15 -4.49 17.26 44.97 0.78 -3.72 16 28 C -0.14 -4.36 9.83 22.45 0.22 -4.14 16 29 C -0.07 -1.89 6.27 -20.08 -0.13 -2.01 16 30 H 0.09 0.66 7.40 -2.39 -0.02 0.65 16 31 H 0.10 0.90 5.29 -2.38 -0.01 0.89 16 32 H 0.09 1.12 8.03 -2.39 -0.02 1.10 16 33 H 0.09 2.89 8.10 -2.39 -0.02 2.87 16 34 H 0.05 2.17 7.42 -2.38 -0.02 2.15 16 35 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.07 3.47 6.14 -2.39 -0.01 3.45 16 37 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.04 2.24 6.97 -2.38 -0.02 2.22 16 39 H 0.25 15.44 8.31 -92.70 -0.77 14.67 16 40 H 0.24 1.03 4.29 -2.91 -0.01 1.02 16 41 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.10 -0.30 8.03 -2.39 -0.02 -0.32 16 43 H 0.12 -0.62 8.13 -2.39 -0.02 -0.64 16 44 H 0.18 0.63 8.01 -2.92 -0.02 0.61 16 45 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 46 H 0.11 4.15 7.47 -2.91 -0.02 4.13 16 Total: -1.00 -92.88 377.67 5.10 -87.77 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 1.01 Total: 6.97 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 7.67 Total: 11.31 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -6.32 Total: -125.13 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.06 Total: -27.19 kcal Atomic # 9 Polarization: -4.49 SS G_CDS: 0.78 Total: -3.72 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -92.88 5.10 -87.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.244 kcal (2) G-P(sol) polarization free energy of solvation -92.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds