Wall clock time and date at job start Sat Apr 11 2020 07:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99668 * 2 1 4 4 C 1.53003 * 109.47171 * 276.05975 * 3 2 1 5 5 H 1.09003 * 112.96494 * 67.26400 * 4 3 2 6 6 C 1.53944 * 113.76795 * 295.58285 * 4 3 2 7 7 C 1.53940 * 86.28898 * 222.09085 * 6 4 3 8 8 N 1.47578 * 113.76824 * 199.08732 * 4 3 2 9 9 C 1.36936 * 134.50029 * 318.94179 * 8 4 3 10 10 H 1.08009 * 119.99124 * 5.34813 * 9 8 4 11 11 C 1.38806 * 120.00671 * 185.34895 * 9 8 4 12 12 N 1.31620 * 120.00076 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00035 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47198 * 59.99832 * 13 11 9 15 15 H 1.48502 * 109.47053 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47168 * 299.99365 * 13 11 9 17 17 C 1.34772 * 120.00269 * 179.97438 * 2 1 3 18 18 O 1.21669 * 120.00080 * 184.20223 * 17 2 1 19 19 C 1.46902 * 120.00094 * 4.20534 * 17 2 1 20 20 C 1.36385 * 126.75943 * 323.87051 * 19 17 2 21 21 N 1.35449 * 109.77162 * 180.02562 * 20 19 17 22 22 C 1.46504 * 124.79364 * 179.97438 * 21 20 19 23 23 C 1.38057 * 110.41477 * 359.97438 * 21 20 19 24 24 C 1.39114 * 133.15649 * 180.28336 * 23 21 20 25 25 C 1.37756 * 119.96448 * 180.12738 * 24 23 21 26 26 C 1.38950 * 120.60567 * 359.53849 * 25 24 23 27 27 F 1.35102 * 119.87272 * 180.23107 * 26 25 24 28 28 C 1.37947 * 120.24861 * 0.25239 * 26 25 24 29 29 C 1.39288 * 119.64896 * 359.97438 * 28 26 25 30 30 H 1.09000 * 109.46997 * 265.13044 * 1 2 3 31 31 H 1.08995 * 109.47067 * 25.13698 * 1 2 3 32 32 H 1.09010 * 109.46648 * 145.13567 * 1 2 3 33 33 H 1.09001 * 109.47616 * 36.06053 * 3 2 1 34 34 H 1.09003 * 109.47539 * 156.05911 * 3 2 1 35 35 H 1.08996 * 113.74432 * 336.43543 * 6 4 3 36 36 H 1.09001 * 113.74111 * 107.64144 * 6 4 3 37 37 H 1.09004 * 113.77207 * 137.90972 * 7 6 4 38 38 H 1.09004 * 113.77345 * 269.18948 * 7 6 4 39 39 H 0.96994 * 120.00691 * 179.97438 * 12 11 9 40 40 H 1.07995 * 125.11910 * 0.07188 * 20 19 17 41 41 H 1.08999 * 109.46758 * 270.02292 * 22 21 20 42 42 H 1.08999 * 109.47227 * 30.02549 * 22 21 20 43 43 H 1.09000 * 109.46978 * 150.02508 * 22 21 20 44 44 H 1.08004 * 120.01924 * 359.97438 * 24 23 21 45 45 H 1.07995 * 119.69832 * 179.76634 * 25 24 23 46 46 H 1.07997 * 120.17338 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3206 1.7866 -1.4345 5 1 1.3629 2.0808 -1.8641 6 6 3.1596 0.8788 -2.3520 7 6 3.7809 2.1761 -2.9003 8 7 3.3893 2.7880 -1.6156 9 6 3.8377 3.8561 -0.8853 10 1 3.4244 4.0528 0.0930 11 6 4.8231 4.6858 -1.4022 12 7 5.3270 4.4458 -2.5942 13 14 5.4351 6.1423 -0.4054 14 1 6.0089 5.6591 0.8761 15 1 6.4806 6.8640 -1.1744 16 1 4.3028 7.0615 -0.1256 17 6 2.1390 -1.1671 0.0005 18 8 3.3532 -1.1685 0.0777 19 6 1.4075 -2.4377 -0.0922 20 6 0.1969 -2.7252 0.4662 21 7 -0.1566 -3.9974 0.1640 22 6 -1.3965 -4.6460 0.5979 23 6 0.8165 -4.5965 -0.6106 24 6 0.9361 -5.8608 -1.1784 25 6 2.0534 -6.1799 -1.9183 26 6 3.0633 -5.2457 -2.1132 27 9 4.1506 -5.5730 -2.8454 28 6 2.9602 -3.9856 -1.5616 29 6 1.8372 -3.6532 -0.8076 30 1 -0.3633 -0.0872 1.0240 31 1 -0.3633 0.9303 -0.4365 32 1 -0.3633 -0.8433 -0.5875 33 1 1.6597 1.9988 0.6049 34 1 3.1926 1.1139 0.4170 35 1 3.8667 0.2461 -1.8157 36 1 2.5688 0.3293 -3.0849 37 1 4.8592 2.1183 -3.0487 38 1 3.2543 2.5853 -3.7625 39 1 6.0153 5.0258 -2.9556 40 1 -0.3918 -2.0412 1.0595 41 1 -1.2323 -5.1395 1.5558 42 1 -2.1805 -3.8964 0.7050 43 1 -1.6990 -5.3847 -0.1443 44 1 0.1545 -6.5927 -1.0371 45 1 2.1435 -7.1640 -2.3539 46 1 3.7461 -3.2606 -1.7135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085643364.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:29 Heat of formation + Delta-G solvation = 55.962988 kcal Electronic energy + Delta-G solvation = -30191.477050 eV Core-core repulsion = 25998.908180 eV Total energy + Delta-G solvation = -4192.568869 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -48.83006 -41.82357 -39.40305 -37.51562 -37.14305 -35.09485 -33.27940 -32.05323 -30.38853 -29.73658 -28.29136 -27.71757 -27.08831 -26.11595 -23.30633 -23.23862 -23.00565 -21.75822 -21.14829 -19.16840 -18.87016 -17.60230 -17.45871 -16.84673 -16.53877 -16.12718 -15.82126 -15.55891 -15.42365 -15.31081 -15.16140 -14.57444 -14.23957 -13.93702 -13.57852 -13.46181 -13.38602 -13.27963 -13.09007 -13.04961 -12.70103 -12.59027 -12.31443 -12.22458 -11.83625 -11.33521 -11.24877 -11.16807 -10.94188 -10.76043 -10.61533 -10.36446 -9.94859 -9.78084 -9.65250 -9.57126 -9.35326 -8.69225 -8.44979 -8.25976 -7.90437 -6.75344 -5.66330 -2.97956 0.67724 1.14698 1.90809 2.31014 3.08573 3.33614 3.45890 3.49853 3.51249 3.64590 4.10560 4.23715 4.25385 4.42822 4.54691 4.63558 4.67873 4.85903 4.92736 5.04604 5.11194 5.16379 5.30902 5.32372 5.37024 5.45865 5.55366 5.64650 5.69569 5.71830 5.95768 5.98739 6.03813 6.06019 6.21660 6.31806 6.40867 6.49939 6.65659 6.77401 6.82219 6.84319 6.87489 6.91567 7.38700 7.58208 7.70627 7.71630 8.09485 8.52549 9.14820 9.81561 10.73290 11.51338 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.015623 B = 0.002787 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.846771 B =10044.586112 C =11310.000831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.606 5.606 3 C 0.116 3.884 4 C 0.128 3.872 5 H 0.040 0.960 6 C -0.158 4.158 7 C 0.165 3.835 8 N -0.600 5.600 9 C -0.222 4.222 10 H 0.078 0.922 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.909 3.091 14 H -0.284 1.284 15 H -0.291 1.291 16 H -0.286 1.286 17 C 0.585 3.415 18 O -0.526 6.526 19 C -0.210 4.210 20 C 0.100 3.900 21 N -0.475 5.475 22 C 0.074 3.926 23 C 0.077 3.923 24 C -0.097 4.097 25 C -0.133 4.133 26 C 0.076 3.924 27 F -0.140 7.140 28 C -0.095 4.095 29 C -0.039 4.039 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.042 0.958 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.253 0.747 40 H 0.182 0.818 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.130 0.870 45 H 0.138 0.862 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.251 -22.853 5.349 29.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.339 5.339 3 C -0.007 4.007 4 C 0.020 3.980 5 H 0.057 0.943 6 C -0.196 4.196 7 C 0.040 3.960 8 N -0.326 5.326 9 C -0.350 4.350 10 H 0.095 0.905 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.739 3.261 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.374 3.626 18 O -0.403 6.403 19 C -0.221 4.221 20 C -0.030 4.030 21 N -0.156 5.156 22 C -0.067 4.067 23 C -0.027 4.027 24 C -0.118 4.118 25 C -0.152 4.152 26 C 0.055 3.945 27 F -0.118 7.118 28 C -0.114 4.114 29 C -0.044 4.044 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.114 0.886 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.063 0.937 40 H 0.199 0.801 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.147 0.853 45 H 0.156 0.844 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.640 -22.698 5.525 29.272 hybrid contribution 0.178 0.983 0.352 1.059 sum -17.462 -21.715 5.877 28.478 Atomic orbital electron populations 1.21979 0.80684 1.03657 1.00683 1.47639 1.06395 1.06306 1.73546 1.21827 0.97967 0.82166 0.98702 1.22506 0.92788 0.89719 0.92956 0.94270 1.23799 0.99522 0.97638 0.98672 1.22095 0.99383 0.86391 0.88139 1.45948 1.33645 1.31907 1.21091 1.18937 1.16624 1.01855 0.97598 0.90469 1.24785 0.99831 0.99069 0.96702 1.69827 1.30525 1.39640 1.16700 0.86249 0.78198 0.82502 0.79105 1.21092 1.21637 1.21306 1.17187 0.86725 0.82206 0.76527 1.90826 1.13322 1.86901 1.49217 1.20058 0.97063 0.95161 1.09835 1.22351 0.95540 0.85533 0.99601 1.43572 1.17512 1.11135 1.43417 1.22063 0.84065 0.99219 1.01354 1.18215 0.90326 0.95069 0.99071 1.19755 0.98786 0.93462 0.99764 1.20747 0.93330 0.99750 1.01418 1.17338 0.85648 0.94210 0.97259 1.91500 1.52375 1.92937 1.75027 1.20577 0.98308 0.95518 0.96996 1.18402 0.94012 0.92339 0.99640 0.93104 0.90595 0.91144 0.91534 0.88627 0.89794 0.93960 0.91619 0.95737 0.93677 0.80076 0.90804 0.89397 0.89696 0.85258 0.84372 0.83764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 9.02 59.85 0.54 1.25 16 2 N -0.61 -9.01 2.78 -183.04 -0.51 -9.52 16 3 C 0.12 2.15 5.42 -4.04 -0.02 2.13 16 4 C 0.13 2.72 4.58 -66.86 -0.31 2.42 16 5 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.16 -3.41 7.29 -25.81 -0.19 -3.60 16 7 C 0.17 4.21 7.39 -2.98 -0.02 4.19 16 8 N -0.60 -15.94 3.57 -170.74 -0.61 -16.55 16 9 C -0.22 -6.37 10.51 -15.06 -0.16 -6.53 16 10 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 11 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 12 N -0.92 -28.37 11.53 55.49 0.64 -27.73 16 13 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 14 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 C 0.59 9.67 7.14 -12.76 -0.09 9.58 16 18 O -0.53 -10.99 15.32 5.22 0.08 -10.91 16 19 C -0.21 -2.79 5.56 -103.31 -0.57 -3.37 16 20 C 0.10 0.89 8.99 -16.62 -0.15 0.74 16 21 N -0.47 -3.72 3.15 -121.58 -0.38 -4.10 16 22 C 0.07 0.23 10.99 59.85 0.66 0.89 16 23 C 0.08 0.80 6.79 -83.94 -0.57 0.23 16 24 C -0.10 -0.82 9.91 -39.43 -0.39 -1.21 16 25 C -0.13 -1.26 9.99 -39.49 -0.39 -1.65 16 26 C 0.08 0.95 7.29 -39.42 -0.29 0.66 16 27 F -0.14 -1.87 17.26 2.25 0.04 -1.83 16 28 C -0.09 -1.35 10.07 -39.30 -0.40 -1.74 16 29 C -0.04 -0.53 6.35 -104.96 -0.67 -1.19 16 30 H 0.05 0.36 7.31 -51.93 -0.38 -0.02 16 31 H 0.08 0.72 8.03 -51.93 -0.42 0.31 16 32 H 0.07 0.59 5.84 -51.92 -0.30 0.29 16 33 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 34 H 0.10 2.09 7.20 -51.93 -0.37 1.72 16 35 H 0.08 1.94 6.81 -51.93 -0.35 1.59 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.84 7.41 -51.93 -0.38 1.46 16 38 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.18 1.01 6.08 -52.49 -0.32 0.69 16 41 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.09 0.11 8.13 -51.93 -0.42 -0.31 16 43 H 0.08 0.17 8.02 -51.93 -0.42 -0.24 16 44 H 0.13 0.66 8.00 -52.48 -0.42 0.24 16 45 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.14 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -36.92 383.03 -9.40 -46.32 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -6.29 Total: -1.66 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -3.11 Total: 2.49 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.86 Total: -57.91 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.92 -9.40 -46.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085643364.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.287 kcal (2) G-P(sol) polarization free energy of solvation -36.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds