Wall clock time and date at job start Sat Apr 11 2020 07:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35097 * 125.90571 * 2 1 4 4 C 1.35012 * 108.02910 * 180.02562 * 3 2 1 5 5 C 1.41038 * 107.84442 * 359.97438 * 4 3 2 6 6 C 1.47860 * 126.06727 * 179.97438 * 5 4 3 7 7 C 1.36732 * 126.82038 * 180.02562 * 6 5 4 8 8 C 1.41889 * 103.81785 * 179.97438 * 7 6 5 9 9 C 1.48344 * 126.84255 * 179.97438 * 8 7 6 10 10 O 1.21493 * 119.99912 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99760 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72345 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 H 1.09005 * 112.84860 * 43.80350 * 13 12 11 15 15 C 1.53785 * 113.61568 * 175.00089 * 13 12 11 16 16 C 1.53778 * 87.07976 * 139.98012 * 15 13 12 17 17 H 1.08998 * 113.61294 * 220.01591 * 16 15 13 18 18 N 1.46504 * 113.61304 * 89.20115 * 16 15 13 19 19 C 1.36935 * 119.99956 * 154.99909 * 18 16 15 20 20 H 1.08007 * 119.99860 * 359.97438 * 19 18 16 21 21 C 1.38810 * 119.99903 * 179.97438 * 19 18 16 22 22 N 1.31611 * 120.00408 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99878 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47172 * 59.99932 * 23 21 19 25 25 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47029 * 300.00063 * 23 21 19 27 27 C 1.53776 * 87.08288 * 334.56599 * 16 15 13 28 28 N 1.31100 * 106.31240 * 0.23895 * 8 7 6 29 29 O 1.20876 * 111.76895 * 359.56893 * 28 8 7 30 30 N 1.31820 * 107.86813 * 0.22680 * 5 4 3 31 31 H 1.08994 * 109.47330 * 90.00738 * 1 2 3 32 32 H 1.09005 * 109.46983 * 210.00488 * 1 2 3 33 33 H 1.09002 * 109.47360 * 330.00184 * 1 2 3 34 34 H 1.07997 * 125.98521 * 0.02562 * 3 2 1 35 35 H 1.07998 * 126.07402 * 180.02562 * 4 3 2 36 36 H 1.07999 * 128.08773 * 359.97438 * 7 6 5 37 37 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 38 38 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 39 39 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 40 40 H 1.08997 * 113.61329 * 254.53183 * 15 13 12 41 41 H 1.08999 * 113.61478 * 25.34777 * 15 13 12 42 42 H 0.96997 * 119.99825 * 334.99390 * 18 16 15 43 43 H 0.97002 * 120.00625 * 179.97438 * 22 21 19 44 44 H 1.08997 * 113.61844 * 270.88472 * 27 16 15 45 45 H 1.09007 * 113.61444 * 139.97790 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2573 1.0943 0.0000 4 6 3.5422 0.6798 -0.0006 5 6 3.5414 -0.7306 -0.0003 6 6 4.7361 -1.6017 -0.0013 7 6 4.7533 -2.9689 -0.0016 8 6 6.1353 -3.2905 -0.0032 9 6 6.7327 -4.6483 -0.0036 10 8 6.0142 -5.6280 -0.0021 11 7 8.0724 -4.7951 -0.0058 12 6 8.6623 -6.1361 -0.0001 13 6 10.1881 -6.0220 0.0031 14 1 10.5546 -5.2653 0.6967 15 6 10.9068 -7.3755 0.1319 16 6 11.9186 -6.8474 -0.8987 17 1 12.2287 -7.5949 -1.6288 18 7 13.0493 -6.1346 -0.2989 19 6 14.2422 -6.0576 -0.9669 20 1 14.3495 -6.5226 -1.9359 21 6 15.3134 -5.3818 -0.3989 22 7 15.1828 -4.8156 0.7820 23 14 16.9409 -5.2773 -1.3099 24 1 16.7360 -4.5944 -2.6126 25 1 17.9157 -4.5083 -0.4953 26 1 17.4649 -6.6465 -1.5459 27 6 10.8010 -5.9195 -1.4036 28 7 6.7791 -2.1484 0.0015 29 8 6.0213 -1.2067 -0.0028 30 7 2.2866 -1.1343 -0.0046 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.9216 2.1207 0.0004 35 1 4.4154 1.3154 -0.0003 36 1 3.9118 -3.6458 -0.0008 37 1 8.6461 -4.0129 -0.0067 38 1 8.3363 -6.6727 0.8910 39 1 8.3404 -6.6785 -0.8890 40 1 11.3378 -7.5488 1.1179 41 1 10.3167 -8.2191 -0.2263 42 1 12.9530 -5.7173 0.5714 43 1 15.9315 -4.3437 1.1792 44 1 10.1826 -6.3648 -2.1829 45 1 11.1468 -4.9173 -1.6572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086376919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:13 Heat of formation + Delta-G solvation = 145.940439 kcal Electronic energy + Delta-G solvation = -27928.481512 eV Core-core repulsion = 23759.734319 eV Total energy + Delta-G solvation = -4168.747193 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.33687 -41.65720 -39.80165 -38.48283 -34.84459 -34.65595 -34.14527 -33.18344 -31.92034 -30.65783 -30.18217 -27.75933 -27.30074 -25.06879 -24.78768 -23.67705 -23.56290 -22.18737 -21.57336 -21.38299 -20.06302 -18.55462 -18.21890 -18.10698 -17.34337 -17.03316 -16.85921 -16.02861 -16.01167 -15.37890 -15.14243 -14.88321 -14.40494 -14.30167 -14.13879 -14.07955 -13.62029 -13.46041 -13.30710 -13.23045 -13.03184 -12.87123 -12.30249 -12.02014 -11.91267 -11.42179 -11.33225 -11.03888 -10.91079 -10.82752 -10.74349 -10.55631 -10.43952 -10.18815 -9.88494 -9.67882 -9.50313 -9.49677 -9.09662 -8.98501 -8.87228 -6.99197 -5.79293 -3.08496 0.44919 1.09736 1.50616 1.61916 2.53461 2.57353 2.84509 3.02289 3.43796 3.48184 3.49170 3.69146 3.99574 4.00294 4.33594 4.55367 4.56935 4.60551 4.68460 4.83150 4.90678 5.04000 5.06152 5.08698 5.18401 5.23701 5.40522 5.46257 5.56936 5.61273 5.68972 5.84084 5.86775 5.94409 6.08826 6.21420 6.30368 6.35195 6.38132 6.58733 6.76109 6.89396 6.95511 7.05160 7.30072 7.68861 7.69693 7.97965 8.39682 9.50333 10.07837 10.42091 11.43010 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.001628 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.857336 B =17198.270288 C =18321.377990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.365 5.365 3 C 0.058 3.942 4 C -0.244 4.244 5 C 0.138 3.862 6 C 0.037 3.963 7 C -0.141 4.141 8 C -0.023 4.023 9 C 0.596 3.404 10 O -0.525 6.525 11 N -0.705 5.705 12 C 0.130 3.870 13 C -0.121 4.121 14 H 0.094 0.906 15 C -0.147 4.147 16 C 0.168 3.832 17 H 0.063 0.937 18 N -0.705 5.705 19 C -0.244 4.244 20 H 0.072 0.928 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.909 3.091 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.169 4.169 28 N -0.318 5.318 29 O 0.141 5.859 30 N -0.259 5.259 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.183 0.817 35 H 0.160 0.840 36 H 0.187 0.813 37 H 0.410 0.590 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.068 0.932 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.862 12.109 -0.705 34.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.149 5.149 3 C -0.086 4.086 4 C -0.273 4.273 5 C -0.026 4.026 6 C -0.028 4.028 7 C -0.165 4.165 8 C -0.181 4.181 9 C 0.379 3.621 10 O -0.400 6.400 11 N -0.356 5.356 12 C 0.007 3.993 13 C -0.140 4.140 14 H 0.113 0.887 15 C -0.186 4.186 16 C 0.055 3.945 17 H 0.081 0.919 18 N -0.344 5.344 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.208 4.208 22 N -0.580 5.580 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.210 4.210 28 N -0.016 5.016 29 O 0.063 5.937 30 N -0.086 5.086 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.200 0.800 35 H 0.178 0.822 36 H 0.204 0.796 37 H 0.245 0.755 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.087 0.913 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -31.767 10.630 -0.799 33.508 hybrid contribution 0.813 1.157 -0.150 1.422 sum -30.954 11.787 -0.949 33.136 Atomic orbital electron populations 1.21987 0.73252 1.05036 1.03920 1.48557 1.06950 1.03319 1.56028 1.22571 0.90698 0.93723 1.01646 1.21591 0.97850 0.93210 1.14624 1.18781 0.88716 0.91755 1.03342 1.20778 0.84303 0.91492 1.06188 1.22643 0.96718 0.93692 1.03443 1.23438 0.92603 0.94260 1.07810 1.16829 0.82652 0.85250 0.77346 1.90801 1.60961 1.38171 1.50116 1.45960 1.05661 1.11000 1.73000 1.21620 0.93265 0.82200 1.02184 1.22737 0.91095 1.00075 1.00056 0.88745 1.23446 0.98477 0.95186 1.01535 1.21046 0.86760 0.92957 0.93712 0.91907 1.42158 1.07810 1.62904 1.21504 1.19249 0.88679 1.28746 1.00823 0.91037 1.24758 0.98366 1.00677 0.96985 1.69646 1.31528 1.40331 1.16522 0.86244 0.83553 0.77536 0.78705 1.21220 1.21681 1.21200 1.23907 1.00096 1.02622 0.94407 1.74226 1.16510 0.95551 1.15330 1.84894 1.12733 1.30248 1.65844 1.77681 0.99798 1.07486 1.23639 0.90219 0.88863 0.88898 0.79980 0.82203 0.79610 0.75497 0.91292 0.91043 0.91246 0.90382 0.78102 0.93386 0.91341 0.91431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.19 11.46 59.85 0.69 0.88 16 2 N -0.36 -2.28 4.01 -68.20 -0.27 -2.56 16 3 C 0.06 0.29 11.46 -17.26 -0.20 0.09 16 4 C -0.24 -1.73 10.77 -39.67 -0.43 -2.15 16 5 C 0.14 1.34 7.11 -82.87 -0.59 0.75 16 6 C 0.04 0.40 7.35 -36.19 -0.27 0.13 16 7 C -0.14 -1.64 10.94 -38.73 -0.42 -2.06 16 8 C -0.02 -0.30 7.18 -82.62 -0.59 -0.90 16 9 C 0.60 8.80 7.85 -12.10 -0.09 8.70 16 10 O -0.53 -8.97 16.95 5.37 0.09 -8.88 16 11 N -0.71 -9.74 5.55 -61.09 -0.34 -10.07 16 12 C 0.13 1.80 5.51 -4.04 -0.02 1.78 16 13 C -0.12 -1.85 3.63 -89.80 -0.33 -2.18 16 14 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 15 C -0.15 -2.36 7.39 -25.92 -0.19 -2.56 16 16 C 0.17 3.29 4.56 -67.12 -0.31 2.99 16 17 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 18 N -0.71 -17.51 5.31 -52.64 -0.28 -17.79 16 19 C -0.24 -6.75 9.97 -15.06 -0.15 -6.90 16 20 H 0.07 1.92 7.83 -52.48 -0.41 1.50 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 23 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 27 C -0.17 -2.88 7.43 -25.92 -0.19 -3.07 16 28 N -0.32 -4.10 11.82 33.35 0.39 -3.71 16 29 O 0.14 1.61 11.20 16.07 0.18 1.79 16 30 N -0.26 -2.52 12.60 33.36 0.42 -2.10 16 31 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 32 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.18 0.14 8.06 -52.49 -0.42 -0.28 16 35 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.19 1.98 8.06 -52.49 -0.42 1.56 16 37 H 0.41 5.41 8.23 -40.82 -0.34 5.07 16 38 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 42 H 0.38 10.11 7.90 -40.82 -0.32 9.79 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 45 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -34.56 394.86 -7.44 -41.99 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.09 Total: 10.29 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -3.19 Total: -4.94 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: 0.65 Total: -63.51 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: 0.27 Total: -7.10 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.56 -7.44 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086376919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.935 kcal (2) G-P(sol) polarization free energy of solvation -34.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds