Wall clock time and date at job start Sat Apr 11 2020 07:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35965 * 126.36450 * 2 1 4 4 N 1.30207 * 110.06662 * 180.02562 * 3 2 1 5 5 C 1.35727 * 109.68223 * 359.97438 * 4 3 2 6 6 N 1.33106 * 133.20151 * 180.02562 * 5 4 3 7 7 C 1.31845 * 121.83156 * 179.97438 * 6 5 4 8 8 O 1.35724 * 119.27476 * 180.02562 * 7 6 5 9 9 C 1.39122 * 121.44705 * 359.75637 * 7 6 5 10 10 C 1.39567 * 119.23343 * 0.50730 * 9 7 6 11 11 C 1.47917 * 121.00685 * 179.75921 * 10 9 7 12 12 O 1.21544 * 119.99802 * 172.86935 * 11 10 9 13 13 N 1.34769 * 119.99917 * 352.86951 * 11 10 9 14 14 C 1.46501 * 119.99766 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47013 * 179.97438 * 14 13 11 16 16 H 1.08996 * 112.84870 * 45.33467 * 15 14 13 17 17 C 1.53778 * 113.61124 * 176.52879 * 15 14 13 18 18 C 1.53782 * 87.07985 * 140.06743 * 17 15 14 19 19 H 1.09000 * 113.61228 * 219.93456 * 18 17 15 20 20 N 1.46506 * 113.61335 * 89.11584 * 18 17 15 21 21 C 1.36938 * 119.99801 * 155.00160 * 20 18 17 22 22 H 1.08004 * 119.99931 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99929 * 179.97438 * 21 20 18 24 24 N 1.31613 * 119.99984 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99946 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47103 * 89.99953 * 25 23 21 27 27 H 1.48496 * 109.47198 * 209.99874 * 25 23 21 28 28 H 1.48502 * 109.47211 * 329.99912 * 25 23 21 29 29 C 1.53778 * 87.08146 * 334.56817 * 18 17 15 30 30 C 1.37613 * 126.36416 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46832 * 254.18430 * 1 2 3 32 32 H 1.09000 * 109.47136 * 14.18359 * 1 2 3 33 33 H 1.09005 * 109.47360 * 134.18297 * 1 2 3 34 34 H 1.08000 * 124.96749 * 0.04865 * 3 2 1 35 35 H 0.96700 * 114.00030 * 90.00529 * 8 7 6 36 36 H 1.08001 * 120.38384 * 180.27152 * 9 7 6 37 37 H 0.96999 * 120.00509 * 359.97438 * 13 11 10 38 38 H 1.09002 * 109.47070 * 60.00253 * 14 13 11 39 39 H 1.08995 * 109.47445 * 299.99609 * 14 13 11 40 40 H 1.09001 * 113.61517 * 254.61601 * 17 15 14 41 41 H 1.09002 * 113.62139 * 25.51952 * 17 15 14 42 42 H 0.97001 * 119.99867 * 334.99840 * 20 18 17 43 43 H 0.97005 * 119.99657 * 180.02562 * 24 23 21 44 44 H 1.09004 * 113.61197 * 270.88673 * 29 18 17 45 45 H 1.08999 * 113.61856 * 139.97970 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0949 0.0000 4 7 3.5209 0.7295 -0.0005 5 6 3.6010 -0.6254 -0.0004 6 7 4.6234 -1.4778 -0.0003 7 6 4.4403 -2.7834 0.0004 8 8 5.5205 -3.6052 0.0010 9 6 3.1641 -3.3373 0.0061 10 6 2.0539 -2.4915 0.0005 11 6 0.6795 -3.0382 0.0009 12 8 -0.2714 -2.2916 0.1266 13 7 0.4816 -4.3640 -0.1381 14 6 -0.8797 -4.9054 -0.1371 15 6 -0.8244 -6.4247 -0.3097 16 1 -0.0721 -6.8955 0.3231 17 6 -2.2024 -7.1034 -0.2374 18 6 -1.7282 -8.0109 -1.3848 19 1 -2.4979 -8.2101 -2.1305 20 7 -1.0492 -9.2265 -0.9293 21 6 -1.0269 -10.3386 -1.7281 22 1 -1.5096 -10.3193 -2.6941 23 6 -0.3831 -11.4902 -1.2967 24 7 -0.3621 -12.5591 -2.0643 25 14 0.4524 -11.5232 0.3737 26 1 -0.5167 -11.9778 1.4030 27 1 1.6053 -12.4582 0.3322 28 1 0.9328 -10.1598 0.7140 29 6 -0.7655 -6.8781 -1.7780 30 6 2.2809 -1.1081 -0.0005 31 1 -0.3633 -0.2801 0.9888 32 1 -0.3633 0.9963 -0.2518 33 1 -0.3634 -0.7163 -0.7370 34 1 1.9255 2.1181 0.0008 35 1 5.8334 -3.8429 0.8845 36 1 3.0339 -4.4094 0.0110 37 1 1.2404 -4.9598 -0.2388 38 1 -1.4457 -4.4671 -0.9591 39 1 -1.3660 -4.6644 0.8081 40 1 -2.3780 -7.6366 0.6969 41 1 -3.0277 -6.4467 -0.5126 42 1 -0.6153 -9.2436 -0.0619 43 1 0.0875 -13.3640 -1.7626 44 1 -1.1979 -6.1596 -2.4744 45 1 0.2189 -7.2292 -2.0874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086385639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:15 Heat of formation + Delta-G solvation = 72.519927 kcal Electronic energy + Delta-G solvation = -29442.119143 eV Core-core repulsion = 25270.188198 eV Total energy + Delta-G solvation = -4171.930945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.89956 -40.26057 -39.56442 -38.79868 -36.66394 -35.19240 -34.56112 -33.45623 -32.47332 -30.73914 -29.64346 -28.01702 -27.32993 -25.33871 -25.13408 -23.60478 -23.33043 -22.35216 -21.78998 -20.55185 -19.34495 -18.59875 -18.40623 -17.98923 -17.65718 -17.33184 -16.65644 -16.13210 -15.67285 -15.56145 -15.43016 -15.03693 -14.74728 -14.53473 -14.48179 -13.93809 -13.82769 -13.65527 -13.41028 -13.05964 -12.69337 -12.56409 -12.19206 -12.18664 -12.03445 -11.71650 -11.48196 -11.33806 -11.11193 -10.99233 -10.63053 -10.53718 -10.30044 -10.14953 -9.79511 -9.65733 -9.54350 -9.33801 -9.15369 -8.99833 -8.85931 -7.39026 -5.86681 -3.23631 -0.09729 0.65713 1.84417 2.10004 2.63408 2.69114 2.85804 3.27402 3.30914 3.34675 3.37665 3.75171 3.91330 4.17589 4.32972 4.45031 4.48882 4.63086 4.73846 4.75883 4.78809 4.93017 5.04255 5.11586 5.25506 5.29008 5.31492 5.34475 5.42510 5.60498 5.70730 5.72912 5.75518 5.81451 5.99160 6.06695 6.12130 6.35521 6.50755 6.51726 6.59436 6.77550 6.96430 7.06528 7.23433 7.56226 7.72618 7.90377 8.32705 9.09985 9.82011 10.00651 11.31300 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.002408 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.721008 B =11625.280827 C =13072.787773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.473 5.473 3 C 0.287 3.713 4 N -0.487 5.487 5 C 0.269 3.731 6 N -0.449 5.449 7 C 0.329 3.671 8 O -0.472 6.472 9 C -0.138 4.138 10 C -0.057 4.057 11 C 0.557 3.443 12 O -0.537 6.537 13 N -0.709 5.709 14 C 0.131 3.869 15 C -0.126 4.126 16 H 0.091 0.909 17 C -0.148 4.148 18 C 0.173 3.827 19 H 0.072 0.928 20 N -0.729 5.729 21 C -0.249 4.249 22 H 0.092 0.908 23 C 0.006 3.994 24 N -0.930 5.930 25 Si 0.885 3.115 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.278 1.278 29 C -0.168 4.168 30 C 0.033 3.967 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.227 0.773 35 H 0.404 0.596 36 H 0.156 0.844 37 H 0.404 0.596 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.362 0.638 43 H 0.261 0.739 44 H 0.072 0.928 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 26.569 7.248 27.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.161 5.161 3 C -0.001 4.001 4 N -0.208 5.208 5 C 0.025 3.975 6 N -0.170 5.170 7 C 0.137 3.863 8 O -0.279 6.279 9 C -0.162 4.162 10 C -0.071 4.071 11 C 0.344 3.656 12 O -0.417 6.417 13 N -0.359 5.359 14 C 0.008 3.992 15 C -0.145 4.145 16 H 0.109 0.891 17 C -0.187 4.187 18 C 0.061 3.939 19 H 0.090 0.910 20 N -0.369 5.369 21 C -0.379 4.379 22 H 0.110 0.890 23 C -0.190 4.190 24 N -0.577 5.577 25 Si 0.715 3.285 26 H -0.210 1.210 27 H -0.216 1.216 28 H -0.204 1.204 29 C -0.209 4.209 30 C -0.083 4.083 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.128 0.872 34 H 0.243 0.757 35 H 0.262 0.738 36 H 0.174 0.826 37 H 0.240 0.760 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.101 0.899 42 H 0.195 0.805 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.904 27.737 6.539 28.645 hybrid contribution -0.224 -1.280 1.640 2.092 sum 2.680 26.458 8.180 27.823 Atomic orbital electron populations 1.22571 0.73621 1.03234 1.06156 1.45279 1.08694 1.04656 1.57440 1.25726 0.84249 0.94004 0.96072 1.70390 1.18323 1.08812 1.23235 1.18942 0.85229 0.90664 1.02639 1.65866 1.35195 1.03054 1.12886 1.18504 0.85810 0.85022 0.96953 1.84872 1.45823 1.62955 1.34236 1.22173 0.91082 1.01278 1.01629 1.19161 0.94149 0.89775 1.04009 1.18079 0.87955 0.82643 0.76951 1.90762 1.43397 1.56907 1.50660 1.46043 1.10730 1.06931 1.72158 1.21578 0.81715 0.93714 1.02164 1.22787 0.99941 0.92017 0.99723 0.89084 1.23462 0.95123 0.98948 1.01190 1.20992 0.93320 0.85264 0.94290 0.90991 1.42513 1.64743 1.09993 1.19700 1.19100 1.30074 0.88554 1.00156 0.89019 1.24692 1.00524 0.95855 0.97910 1.69695 1.48136 1.02840 1.37067 0.86558 0.79565 0.77091 0.85275 1.21017 1.21615 1.20436 1.23878 1.02778 1.00365 0.93842 1.19461 0.93326 0.88923 1.06599 0.89865 0.90507 0.87172 0.75704 0.73829 0.82633 0.76042 0.90945 0.91279 0.91329 0.89949 0.80529 0.92912 0.90916 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 9.18 59.85 0.55 1.13 16 2 N -0.47 -4.26 3.19 -122.88 -0.39 -4.65 16 3 C 0.29 2.25 12.48 -89.77 -1.12 1.13 16 4 N -0.49 -5.86 11.27 -13.60 -0.15 -6.01 16 5 C 0.27 3.54 8.37 -156.97 -1.31 2.22 16 6 N -0.45 -6.05 10.41 -12.77 -0.13 -6.18 16 7 C 0.33 3.55 7.71 -17.22 -0.13 3.42 16 8 O -0.47 -4.23 13.55 -18.88 -0.26 -4.49 16 9 C -0.14 -1.27 9.52 -38.76 -0.37 -1.64 16 10 C -0.06 -0.60 5.91 -104.71 -0.62 -1.22 16 11 C 0.56 5.91 7.77 -12.30 -0.10 5.81 16 12 O -0.54 -6.30 11.08 5.33 0.06 -6.24 16 13 N -0.71 -6.74 5.51 -61.23 -0.34 -7.08 16 14 C 0.13 1.34 5.50 -4.04 -0.02 1.31 16 15 C -0.13 -1.51 3.63 -89.81 -0.33 -1.84 16 16 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.15 -1.95 7.39 -25.92 -0.19 -2.14 16 18 C 0.17 2.98 4.56 -67.12 -0.31 2.67 16 19 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 20 N -0.73 -15.98 5.11 -52.63 -0.27 -16.25 16 21 C -0.25 -6.71 10.45 -15.06 -0.16 -6.86 16 22 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 24 N -0.93 -28.39 13.97 55.49 0.78 -27.61 16 25 Si 0.88 21.10 27.74 -169.99 -4.71 16.39 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.11 6.52 56.52 0.37 -5.74 16 29 C -0.17 -2.39 7.43 -25.92 -0.19 -2.58 16 30 C 0.03 0.38 6.80 -83.66 -0.57 -0.19 16 31 H 0.08 0.64 7.46 -51.93 -0.39 0.25 16 32 H 0.08 0.26 8.10 -51.93 -0.42 -0.16 16 33 H 0.11 0.97 5.82 -51.97 -0.30 0.67 16 34 H 0.23 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.40 1.51 9.06 45.56 0.41 1.93 16 36 H 0.16 1.01 6.59 -52.49 -0.35 0.67 16 37 H 0.40 3.29 6.66 -40.82 -0.27 3.02 16 38 H 0.07 0.76 7.88 -51.93 -0.41 0.35 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 42 H 0.36 7.74 5.76 -40.82 -0.24 7.50 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.07 0.92 7.92 -51.93 -0.41 0.51 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 373.20 15.07 5.62 5.62 Total: -1.00 -36.36 373.20 -9.68 -46.04 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -4.92 Total: 9.16 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -4.96 Total: 1.31 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -0.51 Total: -67.80 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.20 Total: -10.72 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.36 -9.68 -46.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086385639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.557 kcal (2) G-P(sol) polarization free energy of solvation -36.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds