Wall clock time and date at job start Sat Apr 11 2020 07:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35965 * 126.36450 * 2 1 4 4 N 1.30207 * 110.06662 * 180.02562 * 3 2 1 5 5 C 1.35727 * 109.68223 * 359.97438 * 4 3 2 6 6 N 1.33106 * 133.20151 * 180.02562 * 5 4 3 7 7 C 1.31845 * 121.83156 * 179.97438 * 6 5 4 8 8 O 1.35724 * 119.27476 * 180.02562 * 7 6 5 9 9 C 1.39122 * 121.44705 * 359.75637 * 7 6 5 10 10 C 1.39567 * 119.23343 * 0.50730 * 9 7 6 11 11 C 1.47917 * 121.00685 * 179.75921 * 10 9 7 12 12 O 1.21544 * 119.99802 * 172.86935 * 11 10 9 13 13 N 1.34769 * 119.99917 * 352.86951 * 11 10 9 14 14 C 1.46501 * 119.99766 * 179.97438 * 13 11 10 15 15 C 1.53007 * 109.47013 * 179.97438 * 14 13 11 16 16 H 1.08996 * 112.84870 * 45.33467 * 15 14 13 17 17 C 1.53778 * 113.61124 * 176.52879 * 15 14 13 18 18 C 1.53782 * 87.07985 * 140.06743 * 17 15 14 19 19 H 1.09000 * 113.61228 * 219.93456 * 18 17 15 20 20 N 1.46506 * 113.61335 * 89.11584 * 18 17 15 21 21 C 1.36938 * 119.99801 * 155.00160 * 20 18 17 22 22 H 1.08004 * 119.99931 * 0.02562 * 21 20 18 23 23 C 1.38810 * 119.99929 * 179.97438 * 21 20 18 24 24 N 1.31613 * 119.99984 * 179.97438 * 23 21 20 25 25 Si 1.86804 * 119.99946 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47103 * 89.99953 * 25 23 21 27 27 H 1.48496 * 109.47198 * 209.99874 * 25 23 21 28 28 H 1.48502 * 109.47211 * 329.99912 * 25 23 21 29 29 C 1.53778 * 87.08146 * 334.56817 * 18 17 15 30 30 C 1.37613 * 126.36416 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.46832 * 254.18430 * 1 2 3 32 32 H 1.09000 * 109.47136 * 14.18359 * 1 2 3 33 33 H 1.09005 * 109.47360 * 134.18297 * 1 2 3 34 34 H 1.08000 * 124.96749 * 0.04865 * 3 2 1 35 35 H 0.96700 * 114.00030 * 90.00529 * 8 7 6 36 36 H 1.08001 * 120.38384 * 180.27152 * 9 7 6 37 37 H 0.96999 * 120.00509 * 359.97438 * 13 11 10 38 38 H 1.09002 * 109.47070 * 60.00253 * 14 13 11 39 39 H 1.08995 * 109.47445 * 299.99609 * 14 13 11 40 40 H 1.09001 * 113.61517 * 254.61601 * 17 15 14 41 41 H 1.09002 * 113.62139 * 25.51952 * 17 15 14 42 42 H 0.97001 * 119.99867 * 334.99840 * 20 18 17 43 43 H 0.97005 * 119.99657 * 180.02562 * 24 23 21 44 44 H 1.09004 * 113.61197 * 270.88673 * 29 18 17 45 45 H 1.08999 * 113.61856 * 139.97970 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0949 0.0000 4 7 3.5209 0.7295 -0.0005 5 6 3.6010 -0.6254 -0.0004 6 7 4.6234 -1.4778 -0.0003 7 6 4.4403 -2.7834 0.0004 8 8 5.5205 -3.6052 0.0010 9 6 3.1641 -3.3373 0.0061 10 6 2.0539 -2.4915 0.0005 11 6 0.6795 -3.0382 0.0009 12 8 -0.2714 -2.2916 0.1266 13 7 0.4816 -4.3640 -0.1381 14 6 -0.8797 -4.9054 -0.1371 15 6 -0.8244 -6.4247 -0.3097 16 1 -0.0721 -6.8955 0.3231 17 6 -2.2024 -7.1034 -0.2374 18 6 -1.7282 -8.0109 -1.3848 19 1 -2.4979 -8.2101 -2.1305 20 7 -1.0492 -9.2265 -0.9293 21 6 -1.0269 -10.3386 -1.7281 22 1 -1.5096 -10.3193 -2.6941 23 6 -0.3831 -11.4902 -1.2967 24 7 -0.3621 -12.5591 -2.0643 25 14 0.4524 -11.5232 0.3737 26 1 -0.5167 -11.9778 1.4030 27 1 1.6053 -12.4582 0.3322 28 1 0.9328 -10.1598 0.7140 29 6 -0.7655 -6.8781 -1.7780 30 6 2.2809 -1.1081 -0.0005 31 1 -0.3633 -0.2801 0.9888 32 1 -0.3633 0.9963 -0.2518 33 1 -0.3634 -0.7163 -0.7370 34 1 1.9255 2.1181 0.0008 35 1 5.8334 -3.8429 0.8845 36 1 3.0339 -4.4094 0.0110 37 1 1.2404 -4.9598 -0.2388 38 1 -1.4457 -4.4671 -0.9591 39 1 -1.3660 -4.6644 0.8081 40 1 -2.3780 -7.6366 0.6969 41 1 -3.0277 -6.4467 -0.5126 42 1 -0.6153 -9.2436 -0.0619 43 1 0.0875 -13.3640 -1.7626 44 1 -1.1979 -6.1596 -2.4744 45 1 0.2189 -7.2292 -2.0874 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086385639.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:14 Heat of formation + Delta-G solvation = 43.372038 kcal Electronic energy + Delta-G solvation = -29443.383090 eV Core-core repulsion = 25270.188198 eV Total energy + Delta-G solvation = -4173.194892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.60515 -41.08510 -40.34100 -39.91084 -37.36613 -36.22889 -35.27499 -35.09665 -33.35473 -32.54825 -30.35826 -29.06094 -27.94341 -26.44693 -26.09815 -25.19843 -24.10056 -23.41292 -22.70162 -21.33733 -20.30309 -19.78183 -19.52355 -19.12866 -18.61565 -18.10289 -17.37806 -16.98804 -16.69108 -16.38434 -16.29163 -16.11577 -16.02075 -15.47699 -15.26741 -15.13914 -14.90602 -14.61934 -14.46994 -14.14429 -14.13015 -13.41279 -13.24980 -13.10248 -13.01384 -12.88612 -12.75420 -12.64446 -12.17359 -12.08299 -11.87387 -11.84700 -11.61717 -11.55669 -11.19035 -10.96772 -10.85136 -10.32970 -10.12970 -9.89521 -9.58693 -9.28403 -8.01795 -5.35520 -0.83169 -0.09163 1.16899 1.37784 1.42881 1.48579 1.50122 1.86751 1.92534 2.19339 2.49224 2.57557 3.04682 3.25383 3.28747 3.45241 3.53349 3.68906 3.74291 3.84241 3.92419 3.99679 4.11047 4.13106 4.29428 4.38420 4.40393 4.56148 4.61490 4.71598 4.74954 4.87210 4.95067 4.99889 5.08308 5.11738 5.15613 5.26579 5.34272 5.46255 5.56533 5.81805 5.95372 6.23533 6.30059 6.33445 6.64861 6.83760 6.96558 7.09226 7.86149 8.04427 9.19734 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014964 B = 0.002408 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.721008 B =11625.280827 C =13072.787773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.475 5.475 3 C 0.307 3.693 4 N -0.532 5.532 5 C 0.242 3.758 6 N -0.488 5.488 7 C 0.326 3.674 8 O -0.481 6.481 9 C -0.129 4.129 10 C -0.063 4.063 11 C 0.558 3.442 12 O -0.548 6.548 13 N -0.703 5.703 14 C 0.141 3.859 15 C -0.107 4.107 16 H 0.091 0.909 17 C -0.131 4.131 18 C 0.143 3.857 19 H 0.055 0.945 20 N -0.733 5.733 21 C -0.232 4.232 22 H 0.055 0.945 23 C -0.067 4.067 24 N -0.985 5.985 25 Si 0.957 3.043 26 H -0.280 1.280 27 H -0.299 1.299 28 H -0.245 1.245 29 C -0.157 4.157 30 C 0.016 3.984 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.092 0.908 34 H 0.278 0.722 35 H 0.424 0.576 36 H 0.183 0.817 37 H 0.411 0.589 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.367 0.633 43 H 0.257 0.743 44 H 0.091 0.909 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.706 29.066 9.076 30.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.161 5.161 3 C 0.020 3.980 4 N -0.254 5.254 5 C -0.001 4.001 6 N -0.210 5.210 7 C 0.134 3.866 8 O -0.290 6.290 9 C -0.152 4.152 10 C -0.076 4.076 11 C 0.345 3.655 12 O -0.429 6.429 13 N -0.353 5.353 14 C 0.018 3.982 15 C -0.126 4.126 16 H 0.109 0.891 17 C -0.170 4.170 18 C 0.033 3.967 19 H 0.073 0.927 20 N -0.375 5.375 21 C -0.363 4.363 22 H 0.073 0.927 23 C -0.259 4.259 24 N -0.636 5.636 25 Si 0.784 3.216 26 H -0.206 1.206 27 H -0.226 1.226 28 H -0.169 1.169 29 C -0.197 4.197 30 C -0.100 4.100 31 H 0.093 0.907 32 H 0.136 0.864 33 H 0.110 0.890 34 H 0.294 0.706 35 H 0.286 0.714 36 H 0.200 0.800 37 H 0.248 0.752 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.127 0.873 42 H 0.201 0.799 43 H 0.066 0.934 44 H 0.110 0.890 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.291 30.299 8.391 31.523 hybrid contribution -0.122 -1.983 0.959 2.206 sum 2.169 28.316 9.350 29.899 Atomic orbital electron populations 1.22600 0.72282 1.05162 1.05106 1.45519 1.09384 1.04223 1.57015 1.26742 0.82981 0.95471 0.92839 1.70353 1.20731 1.08676 1.25592 1.19223 0.85955 0.91305 1.03593 1.65824 1.36363 1.04301 1.14550 1.18713 0.86766 0.84609 0.96469 1.84823 1.45535 1.62457 1.36221 1.22372 0.90062 1.02392 1.00375 1.19248 0.94457 0.89718 1.04217 1.18048 0.87769 0.82779 0.76858 1.90778 1.43680 1.57234 1.51198 1.45945 1.10840 1.06700 1.71839 1.21428 0.82051 0.92030 1.02708 1.22598 0.99065 0.93316 0.97571 0.89067 1.23348 0.96683 0.97886 0.99085 1.21367 0.93993 0.84915 0.96398 0.92668 1.42425 1.65610 1.10128 1.19363 1.19052 1.27942 0.90159 0.99123 0.92722 1.25554 1.02323 0.95509 1.02474 1.69893 1.50277 1.03744 1.39673 0.85388 0.77907 0.78456 0.79868 1.20626 1.22604 1.16870 1.23727 1.00793 0.99135 0.96076 1.19633 0.93362 0.89935 1.07090 0.90655 0.86437 0.89014 0.70647 0.71432 0.79958 0.75181 0.90679 0.90498 0.91365 0.87300 0.79899 0.93394 0.89025 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 9.18 127.77 1.17 2.16 16 2 N -0.47 -7.64 3.19 -542.68 -1.73 -9.38 16 3 C 0.31 4.14 12.48 180.05 2.25 6.38 16 4 N -0.53 -12.53 11.27 -196.94 -2.22 -14.75 16 5 C 0.24 6.38 8.37 134.29 1.12 7.50 16 6 N -0.49 -13.33 10.41 -307.37 -3.20 -16.53 16 7 C 0.33 6.86 7.71 84.90 0.65 7.51 16 8 O -0.48 -8.18 13.55 -90.46 -1.23 -9.40 16 9 C -0.13 -2.17 9.52 22.80 0.22 -1.95 16 10 C -0.06 -1.23 5.91 -19.92 -0.12 -1.34 16 11 C 0.56 10.54 7.77 86.81 0.67 11.22 16 12 O -0.55 -11.59 11.08 -3.85 -0.04 -11.63 16 13 N -0.70 -11.17 5.51 -465.90 -2.57 -13.74 16 14 C 0.14 2.34 5.50 86.38 0.48 2.81 16 15 C -0.11 -2.19 3.63 -10.27 -0.04 -2.23 16 16 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 17 C -0.13 -3.03 7.39 31.12 0.23 -2.80 16 18 C 0.14 4.72 4.56 45.52 0.21 4.93 16 19 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 20 N -0.73 -31.45 5.11 -320.43 -1.64 -33.08 16 21 C -0.23 -12.70 10.45 84.03 0.88 -11.82 16 22 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 23 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 24 N -0.99 -62.16 13.97 21.65 0.30 -61.86 16 25 Si 0.96 43.39 27.74 68.60 1.90 45.29 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 28 H -0.24 -9.59 6.52 99.48 0.65 -8.94 16 29 C -0.16 -4.11 7.43 31.12 0.23 -3.88 16 30 C 0.02 0.36 6.80 39.28 0.27 0.63 16 31 H 0.07 0.98 7.46 -2.39 -0.02 0.96 16 32 H 0.12 0.33 8.10 -2.39 -0.02 0.31 16 33 H 0.09 1.43 5.82 -3.07 -0.02 1.41 16 34 H 0.28 0.18 8.06 -2.91 -0.02 0.15 16 35 H 0.42 2.71 9.06 -74.06 -0.67 2.04 16 36 H 0.18 1.88 6.59 -2.91 -0.02 1.86 16 37 H 0.41 5.35 6.66 -92.71 -0.62 4.73 16 38 H 0.07 1.27 7.88 -2.39 -0.02 1.26 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.11 1.99 8.10 -2.39 -0.02 1.97 16 42 H 0.37 14.84 5.76 -92.71 -0.53 14.30 16 43 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 44 H 0.09 2.07 7.92 -2.39 -0.02 2.05 16 45 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -83.40 373.20 -2.54 -85.94 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -0.81 Total: 23.41 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 8.69 Total: 15.73 kcal Atomic # 7 Polarization: -138.28 SS G_CDS: -11.06 Total: -149.33 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -1.27 Total: -21.03 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.90 Total: 45.29 kcal Total: -83.40 -2.54 -85.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086385639.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.311 kcal (2) G-P(sol) polarization free energy of solvation -83.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds