Wall clock time and date at job start Sat Apr 11 2020 07:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34451 * 125.76765 * 2 1 4 4 C 1.38067 * 107.39074 * 179.97438 * 3 2 1 5 5 C 1.47354 * 126.41510 * 179.97438 * 4 3 2 6 6 O 1.34259 * 127.19532 * 312.31523 * 5 4 3 7 7 N 1.20734 * 111.95950 * 179.97438 * 6 5 4 8 8 C 1.29874 * 112.80568 * 359.70065 * 7 6 5 9 9 C 1.39926 * 127.20212 * 132.31201 * 5 4 3 10 10 C 1.46924 * 128.39422 * 0.02562 * 9 5 4 11 11 O 1.21666 * 119.99981 * 354.87587 * 10 9 5 12 12 N 1.34776 * 119.99784 * 174.88175 * 10 9 5 13 13 C 1.46496 * 119.99637 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47233 * 179.97438 * 13 12 10 15 15 H 1.09001 * 112.84915 * 43.79921 * 14 13 12 16 16 C 1.53773 * 113.61673 * 175.00082 * 14 13 12 17 17 C 1.53783 * 87.08387 * 139.97848 * 16 14 13 18 18 H 1.08993 * 113.61892 * 219.93133 * 17 16 14 19 19 N 1.46502 * 113.61062 * 89.11419 * 17 16 14 20 20 C 1.36936 * 120.00002 * 156.53135 * 19 17 16 21 21 H 1.08004 * 119.99946 * 359.72897 * 20 19 17 22 22 C 1.38807 * 120.00307 * 179.97438 * 20 19 17 23 23 N 1.31628 * 119.99864 * 359.72565 * 22 20 19 24 24 Si 1.86793 * 120.00308 * 179.72690 * 22 20 19 25 25 H 1.48493 * 109.47426 * 59.99890 * 24 22 20 26 26 H 1.48503 * 109.47433 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47026 * 299.99798 * 24 22 20 28 28 C 1.53776 * 87.17183 * 334.52565 * 17 16 14 29 29 C 1.41306 * 107.17907 * 0.23949 * 4 3 2 30 30 N 1.30479 * 108.05456 * 359.59150 * 29 4 3 31 31 H 1.09003 * 109.47347 * 89.99983 * 1 2 3 32 32 H 1.09007 * 109.47081 * 210.00057 * 1 2 3 33 33 H 1.09002 * 109.47126 * 329.99441 * 1 2 3 34 34 H 1.08002 * 126.31005 * 359.92928 * 3 2 1 35 35 H 1.08009 * 126.78762 * 180.29472 * 8 7 6 36 36 H 0.96994 * 120.00149 * 359.97438 * 12 10 9 37 37 H 1.09003 * 109.47529 * 60.00064 * 13 12 10 38 38 H 1.08996 * 109.47471 * 299.99652 * 13 12 10 39 39 H 1.09003 * 113.61749 * 25.43081 * 16 14 13 40 40 H 1.09003 * 113.61650 * 254.52907 * 16 14 13 41 41 H 0.97000 * 120.00085 * 336.53239 * 19 17 16 42 42 H 0.96994 * 119.99745 * 179.97438 * 23 22 20 43 43 H 1.09002 * 113.61835 * 140.01601 * 28 17 16 44 44 H 1.08997 * 113.61455 * 270.92195 * 28 17 16 45 45 H 1.08007 * 125.97120 * 179.74267 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2509 1.0909 0.0000 4 6 3.5611 0.6557 0.0006 5 6 4.7651 1.5052 0.0003 6 8 5.0133 2.5609 -0.7912 7 7 6.0880 3.0585 -0.5564 8 6 6.7244 2.4536 0.4006 9 6 5.8887 1.3805 0.8248 10 6 6.1424 0.3875 1.8775 11 8 5.2756 -0.4095 2.1836 12 7 7.3353 0.3597 2.5042 13 6 7.5884 -0.6308 3.5535 14 6 9.0070 -0.4475 4.0965 15 1 9.2641 0.5984 4.2644 16 6 9.3329 -1.3612 5.2896 17 6 10.7250 -1.5498 4.6641 18 1 11.1020 -2.5699 4.7370 19 7 11.7035 -0.5495 5.0978 20 6 13.0424 -0.8303 5.0378 21 1 13.3769 -1.7910 4.6748 22 6 13.9696 0.1176 5.4481 23 7 13.5620 1.2886 5.8900 24 14 15.7957 -0.2683 5.3734 25 1 16.1821 -0.5641 3.9704 26 1 16.5693 0.9003 5.8645 27 1 16.0876 -1.4483 6.2265 28 6 10.0754 -1.2285 3.3079 29 6 3.5316 -0.7571 -0.0047 30 7 2.2829 -1.1355 0.0006 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5139 34 1 1.9185 2.1185 -0.0011 35 1 7.6965 2.7112 0.7948 36 1 8.0264 0.9949 2.2600 37 1 7.4852 -1.6337 3.1391 38 1 6.8695 -0.4959 4.3616 39 1 8.7384 -2.2746 5.3153 40 1 9.3511 -0.8399 6.2467 41 1 11.4030 0.3119 5.4275 42 1 14.2099 1.9509 6.1771 43 1 10.6927 -0.5999 2.6660 44 1 9.6837 -2.1055 2.7927 45 1 4.3922 -1.4096 -0.0096 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086437928.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:32:21 Heat of formation + Delta-G solvation = 142.309620 kcal Electronic energy + Delta-G solvation = -28769.981022 eV Core-core repulsion = 24601.076385 eV Total energy + Delta-G solvation = -4168.904637 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.12715 -41.48690 -39.68611 -38.44012 -34.74862 -34.30425 -33.94428 -33.14642 -32.54246 -30.27086 -29.83466 -27.81496 -27.04963 -25.08471 -24.77476 -23.65924 -23.15541 -21.81796 -21.41256 -21.09754 -20.42028 -18.72702 -18.26000 -17.85922 -17.50148 -17.19969 -16.30268 -15.90878 -15.87401 -15.30972 -15.09175 -14.84005 -14.69489 -14.16027 -14.05797 -13.74881 -13.56390 -13.41163 -13.25726 -13.21105 -12.92239 -12.82525 -12.28885 -11.96089 -11.90025 -11.40405 -11.21007 -11.05506 -10.84186 -10.74202 -10.50790 -10.28198 -10.20441 -10.07715 -9.91077 -9.80874 -9.70130 -9.49633 -9.03296 -8.88995 -8.60184 -7.01512 -5.82083 -3.11141 0.57887 1.47342 1.63513 1.96231 2.30355 2.73437 3.17192 3.21144 3.41697 3.46380 3.47118 3.97716 4.03222 4.31104 4.41219 4.47928 4.54656 4.65169 4.77879 4.89930 4.93196 5.03376 5.04523 5.13350 5.22996 5.33409 5.39629 5.44068 5.57462 5.60640 5.69951 5.85724 5.94403 6.09284 6.15039 6.20285 6.35734 6.38445 6.42749 6.57804 6.73440 6.88312 7.03033 7.25795 7.45455 7.67382 7.90877 8.14954 8.37186 9.47813 10.05283 10.39441 11.40229 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020421 B = 0.001909 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.793977 B =14665.106564 C =15619.808660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.365 5.365 3 C 0.101 3.899 4 C -0.194 4.194 5 C 0.130 3.870 6 O 0.104 5.896 7 N -0.365 5.365 8 C 0.030 3.970 9 C -0.251 4.251 10 C 0.593 3.407 11 O -0.532 6.532 12 N -0.715 5.715 13 C 0.133 3.867 14 C -0.120 4.120 15 H 0.093 0.907 16 C -0.147 4.147 17 C 0.167 3.833 18 H 0.061 0.939 19 N -0.706 5.706 20 C -0.243 4.243 21 H 0.072 0.928 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.909 3.091 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.168 4.168 29 C 0.125 3.875 30 N -0.298 5.298 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.185 0.815 35 H 0.200 0.800 36 H 0.402 0.598 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.609 0.794 -13.001 29.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.143 5.143 3 C -0.050 4.050 4 C -0.207 4.207 5 C 0.063 3.937 6 O 0.043 5.957 7 N -0.070 5.070 8 C -0.150 4.150 9 C -0.259 4.259 10 C 0.379 3.621 11 O -0.410 6.410 12 N -0.366 5.366 13 C 0.011 3.989 14 C -0.139 4.139 15 H 0.111 0.889 16 C -0.186 4.186 17 C 0.054 3.946 18 H 0.079 0.921 19 N -0.344 5.344 20 C -0.374 4.374 21 H 0.090 0.910 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.209 4.209 29 C -0.063 4.063 30 N -0.117 5.117 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.202 0.798 35 H 0.217 0.783 36 H 0.236 0.764 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -27.726 0.197 -13.530 30.852 hybrid contribution 1.969 0.809 0.553 2.199 sum -25.758 1.006 -12.976 28.859 Atomic orbital electron populations 1.21982 0.73394 1.05051 1.03839 1.48315 1.07183 1.03771 1.55031 1.22946 0.89939 0.93835 0.98283 1.17656 0.88257 0.92012 1.22787 1.22025 0.93891 0.88136 0.89632 1.84893 1.28459 1.34747 1.47636 1.73551 0.94561 1.20661 1.18203 1.25072 1.02018 0.93259 0.94623 1.21421 0.97055 1.02866 1.04559 1.16698 0.82487 0.82618 0.80313 1.90830 1.44423 1.40466 1.65253 1.45860 1.14901 1.36776 1.39049 1.21508 0.96898 0.91478 0.89058 1.22767 0.92251 1.00368 0.98485 0.88861 1.23419 0.99174 0.98830 0.97215 1.21057 0.88022 0.93794 0.91682 0.92068 1.42158 1.01756 1.15013 1.75512 1.19243 0.82529 0.99358 1.36263 0.91050 1.24759 0.98123 0.96249 1.01717 1.69651 1.33271 1.05909 1.49251 0.86244 0.85107 0.76982 0.77702 1.21223 1.21692 1.21209 1.23935 0.97846 0.99231 0.99911 1.23894 0.94990 0.92715 0.94667 1.77288 1.01567 1.07347 1.25521 0.90181 0.88790 0.89103 0.79773 0.78306 0.76387 0.91320 0.91652 0.90408 0.91326 0.78121 0.93399 0.91473 0.91370 0.79349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.33 11.44 59.85 0.68 1.02 16 2 N -0.36 -2.95 3.99 -67.54 -0.27 -3.22 16 3 C 0.10 0.77 11.51 -16.47 -0.19 0.58 16 4 C -0.19 -2.00 5.56 -105.09 -0.58 -2.59 16 5 C 0.13 1.41 7.39 -35.24 -0.26 1.15 16 6 O 0.10 1.12 11.17 16.64 0.19 1.30 16 7 N -0.36 -4.16 11.97 30.85 0.37 -3.79 16 8 C 0.03 0.30 11.68 -16.75 -0.20 0.11 16 9 C -0.25 -2.85 6.36 -104.12 -0.66 -3.51 16 10 C 0.59 7.59 7.80 -12.74 -0.10 7.49 16 11 O -0.53 -8.16 14.55 5.22 0.08 -8.09 16 12 N -0.72 -8.34 5.55 -61.54 -0.34 -8.68 16 13 C 0.13 1.69 5.51 -4.04 -0.02 1.66 16 14 C -0.12 -1.70 3.65 -89.66 -0.33 -2.03 16 15 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 16 C -0.15 -2.27 7.38 -25.92 -0.19 -2.46 16 17 C 0.17 3.16 4.55 -67.12 -0.31 2.86 16 18 H 0.06 1.18 8.11 -51.93 -0.42 0.76 16 19 N -0.71 -17.02 5.31 -52.64 -0.28 -17.30 16 20 C -0.24 -6.58 9.97 -15.06 -0.15 -6.73 16 21 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.51 13.06 55.49 0.72 -26.78 16 24 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 28 C -0.17 -2.69 7.45 -25.78 -0.19 -2.88 16 29 C 0.12 1.41 10.39 -16.96 -0.18 1.23 16 30 N -0.30 -3.36 12.50 30.87 0.39 -2.97 16 31 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 34 H 0.19 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.20 1.46 7.77 -52.48 -0.41 1.06 16 36 H 0.40 4.03 7.72 -40.82 -0.32 3.71 16 37 H 0.07 0.89 7.85 -51.93 -0.41 0.48 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.38 9.81 7.90 -40.82 -0.32 9.49 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 45 H 0.19 2.04 7.82 -52.48 -0.41 1.63 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -34.38 389.48 -7.11 -41.49 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.04 Total: 9.73 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.77 Total: -4.54 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: 0.59 Total: -62.75 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: 0.26 Total: -6.79 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.38 -7.11 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086437928.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.799 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds