Wall clock time and date at job start Sat Apr 11 2020 07:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86803 * 119.99919 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00147 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00098 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99897 * 3 2 1 7 7 C 1.38955 * 120.00236 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99776 * 0.02562 * 7 2 1 9 9 N 1.37090 * 119.99992 * 179.97438 * 7 2 1 10 10 C 1.34784 * 119.99714 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00111 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99627 * 180.02562 * 10 9 7 13 13 N 1.46903 * 109.47177 * 179.97438 * 12 10 9 14 14 C 1.46893 * 111.00304 * 179.97438 * 13 12 10 15 15 H 1.09000 * 112.85595 * 336.19708 * 14 13 12 16 16 C 1.53791 * 113.61519 * 107.50326 * 14 13 12 17 17 C 1.53773 * 87.08168 * 139.98216 * 16 14 13 18 18 H 1.09003 * 113.69044 * 220.00961 * 17 16 14 19 19 N 1.46498 * 113.61887 * 89.11802 * 17 16 14 20 20 C 1.34779 * 120.00004 * 107.49846 * 19 17 16 21 21 O 1.21280 * 119.99998 * 0.02562 * 20 19 17 22 22 C 1.50701 * 119.99722 * 180.02562 * 20 19 17 23 23 C 1.52997 * 112.85011 * 48.80217 * 22 20 19 24 24 F 1.39898 * 109.47547 * 309.66508 * 23 22 20 25 25 F 1.39898 * 109.47061 * 69.66822 * 23 22 20 26 26 C 1.53780 * 113.61181 * 277.49596 * 22 20 19 27 27 C 1.53777 * 87.07921 * 220.01915 * 26 22 20 28 28 C 1.53778 * 87.08309 * 25.43588 * 27 26 22 29 29 C 1.53781 * 87.08399 * 334.56680 * 17 16 14 30 30 H 0.97001 * 119.99781 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00238 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.47076 * 299.99278 * 12 10 9 33 33 H 1.09002 * 109.47753 * 59.99519 * 12 10 9 34 34 H 1.00899 * 110.99897 * 303.95678 * 13 12 10 35 35 H 1.08999 * 113.61364 * 254.53201 * 16 14 13 36 36 H 1.08996 * 113.61017 * 25.43144 * 16 14 13 37 37 H 0.97004 * 119.99909 * 287.50233 * 19 17 16 38 38 H 1.09003 * 109.47106 * 189.66282 * 23 22 20 39 39 H 1.08994 * 113.61924 * 334.56740 * 26 22 20 40 40 H 1.09003 * 113.61312 * 105.47643 * 26 22 20 41 41 H 1.09002 * 113.61695 * 270.88387 * 27 26 22 42 42 H 1.09003 * 113.61170 * 139.98404 * 27 26 22 43 43 H 1.09003 * 113.61460 * 220.02180 * 28 27 26 44 44 H 1.08998 * 113.69079 * 89.12243 * 28 27 26 45 45 H 1.08998 * 113.61945 * 270.88596 * 29 17 16 46 46 H 1.09007 * 113.69074 * 139.99255 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4402 -0.7001 6 1 1.4455 2.6527 -0.7001 7 6 2.0090 -1.2034 0.0005 8 1 1.4690 -2.1387 0.0005 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3706 0.0000 11 8 3.4473 -3.4210 0.0009 12 6 5.5607 -2.3705 0.0000 13 7 6.0505 -3.7555 0.0006 14 6 7.5189 -3.7946 0.0000 15 1 7.9665 -2.8875 -0.4061 16 6 8.1240 -4.2339 1.3439 17 6 9.1488 -5.0405 0.5292 18 1 9.3761 -6.0176 0.9558 19 7 10.3505 -4.2792 0.1792 20 6 11.5195 -4.5442 0.7954 21 8 11.5767 -5.4133 1.6395 22 6 12.7555 -3.7606 0.4357 23 6 12.5187 -2.2491 0.4256 24 9 11.3863 -1.9596 -0.3431 25 9 12.3206 -1.7994 1.7354 26 6 13.4714 -4.2824 -0.8213 27 6 14.7937 -4.0167 -0.0826 28 6 14.0047 -4.1833 1.2268 29 6 8.1005 -5.0880 -0.5949 30 1 -0.4850 0.8401 0.0004 31 1 3.8649 -0.3633 -0.0011 32 1 5.9240 -1.8567 -0.8901 33 1 5.9242 -1.8566 0.8899 34 1 5.6750 -4.2714 0.7822 35 1 8.5652 -3.4153 1.9125 36 1 7.4560 -4.8540 1.9416 37 1 10.3048 -3.5843 -0.4961 38 1 13.3867 -1.7482 -0.0031 39 1 13.2878 -5.3378 -1.0220 40 1 13.3274 -3.6522 -1.6990 41 1 15.1831 -3.0097 -0.2327 42 1 15.5453 -4.7902 -0.2409 43 1 14.2911 -3.4731 2.0025 44 1 13.9662 -5.2112 1.5872 45 1 7.4260 -5.9415 -0.5272 46 1 8.5214 -4.9592 -1.5921 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713957546.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:31:23 Heat of formation + Delta-G solvation = -121.199150 kcal Electronic energy + Delta-G solvation = -30484.005762 eV Core-core repulsion = 25852.985342 eV Total energy + Delta-G solvation = -4631.020421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.63682 -47.60554 -41.02982 -39.64399 -38.36146 -37.70423 -34.66942 -33.87771 -32.53135 -31.62470 -29.15074 -27.07880 -26.40396 -25.82680 -25.44156 -24.18636 -22.87393 -21.79027 -20.02670 -19.70482 -19.25458 -18.57826 -18.26191 -17.76274 -17.61404 -16.61561 -16.43591 -16.04960 -15.54699 -15.30979 -15.03976 -14.96868 -14.80124 -14.71694 -14.39188 -14.14513 -13.92938 -13.41341 -13.29114 -13.15844 -13.13898 -12.85296 -12.74165 -12.60531 -12.37780 -12.25802 -12.19552 -11.93705 -11.80127 -11.54212 -11.18308 -11.16211 -11.07912 -10.88619 -10.58993 -10.50539 -10.12345 -9.96471 -9.56452 -9.32961 -8.56775 -8.18110 -8.07956 -6.30215 -3.81517 2.07534 2.66906 3.00962 3.03377 3.07459 3.15535 3.40087 3.56987 3.66003 3.75250 4.00308 4.08934 4.10351 4.13337 4.34145 4.36432 4.48281 4.53386 4.67369 4.74764 4.87866 4.97966 4.99686 5.07943 5.21239 5.23303 5.26681 5.36469 5.41929 5.60776 5.64551 5.65089 5.68040 5.71869 5.81035 5.87693 5.94568 5.97103 6.32160 7.13850 7.15768 7.58137 7.60293 7.81866 8.15549 8.60800 8.95933 9.43459 9.83816 10.82910 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.018785 B = 0.002111 C = 0.001965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.232114 B =13260.719647 C =14243.476831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.276 1.276 7 C -0.305 4.305 8 H 0.120 0.880 9 N -0.591 5.591 10 C 0.450 3.550 11 O -0.565 6.565 12 C 0.047 3.953 13 N -0.656 5.656 14 C 0.068 3.932 15 H 0.094 0.906 16 C -0.180 4.180 17 C 0.116 3.884 18 H 0.104 0.896 19 N -0.706 5.706 20 C 0.533 3.467 21 O -0.528 6.528 22 C -0.175 4.175 23 C 0.289 3.711 24 F -0.196 7.196 25 F -0.193 7.193 26 C -0.110 4.110 27 C -0.145 4.145 28 C -0.103 4.103 29 C -0.131 4.131 30 H 0.273 0.727 31 H 0.370 0.630 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.354 0.646 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.405 0.595 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.108 0.892 45 H 0.103 0.897 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.336 -4.159 -1.626 34.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.202 1.202 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.230 5.230 10 C 0.235 3.765 11 O -0.447 6.447 12 C -0.086 4.086 13 N -0.287 5.287 14 C -0.044 4.044 15 H 0.112 0.888 16 C -0.221 4.221 17 C 0.010 3.990 18 H 0.122 0.878 19 N -0.360 5.360 20 C 0.318 3.682 21 O -0.404 6.404 22 C -0.179 4.179 23 C 0.235 3.765 24 F -0.177 7.177 25 F -0.175 7.175 26 C -0.148 4.148 27 C -0.183 4.183 28 C -0.141 4.141 29 C -0.170 4.170 30 H 0.084 0.916 31 H 0.203 0.797 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.175 0.825 35 H 0.088 0.912 36 H 0.114 0.886 37 H 0.245 0.755 38 H 0.142 0.858 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.127 0.873 45 H 0.121 0.879 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 33.613 -5.415 -1.696 34.088 hybrid contribution 0.447 2.249 0.639 2.380 sum 34.060 -3.166 -1.057 34.223 Atomic orbital electron populations 1.69624 1.05630 1.27473 1.49423 1.25047 0.95508 0.97985 0.97689 0.86666 0.79796 0.84039 0.78857 1.19670 1.19477 1.20167 1.19434 0.79261 0.96629 1.48006 0.86282 1.42213 1.07537 1.06172 1.67120 1.19735 0.88234 0.84557 0.83941 1.90564 1.69461 1.30939 1.53702 1.21754 0.94972 0.90660 1.01202 1.60004 1.05075 1.12528 1.51128 1.23103 0.88250 0.97938 0.95064 0.88817 1.24188 0.98932 1.00832 0.98100 1.21803 0.83586 0.95990 0.97574 0.87797 1.46029 1.08113 1.39474 1.42364 1.19844 0.83588 0.83622 0.81180 1.90709 1.85058 1.32741 1.31915 1.23416 0.96540 0.93953 1.04000 1.21537 0.86990 0.92502 0.75422 1.92874 1.55338 1.94084 1.75447 1.93040 1.95988 1.90270 1.38154 1.22881 0.94635 1.03012 0.94284 1.22970 0.96678 1.02948 0.95667 1.22824 0.90149 1.04356 0.96759 1.23455 0.96288 0.99614 0.97628 0.91629 0.79698 0.89532 0.93705 0.82523 0.91243 0.88646 0.75536 0.85784 0.88162 0.89689 0.89482 0.89835 0.89979 0.87335 0.87893 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.95 13.96 55.50 0.77 -25.17 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.53 27.74 -169.99 -4.71 14.82 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.30 -8.71 10.16 -14.93 -0.15 -8.86 16 8 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 9 N -0.59 -14.24 5.09 -10.96 -0.06 -14.30 16 10 C 0.45 10.33 7.82 -10.98 -0.09 10.24 16 11 O -0.56 -15.32 15.78 5.55 0.09 -15.23 16 12 C 0.05 0.78 6.01 -4.98 -0.03 0.75 16 13 N -0.66 -10.10 6.24 -107.13 -0.67 -10.77 16 14 C 0.07 0.79 4.06 -66.90 -0.27 0.51 16 15 H 0.09 1.02 7.87 -51.93 -0.41 0.62 16 16 C -0.18 -1.98 7.49 -25.92 -0.19 -2.18 16 17 C 0.12 1.19 4.32 -67.12 -0.29 0.90 16 18 H 0.10 1.16 7.46 -51.93 -0.39 0.78 16 19 N -0.71 -6.61 4.99 -53.02 -0.26 -6.87 16 20 C 0.53 5.44 6.91 -10.98 -0.08 5.36 16 21 O -0.53 -7.25 15.50 5.56 0.09 -7.16 16 22 C -0.17 -1.14 0.92 -154.85 -0.14 -1.29 16 23 C 0.29 1.75 4.57 37.16 0.17 1.92 16 24 F -0.20 -1.43 14.50 2.25 0.03 -1.39 16 25 F -0.19 -1.74 17.06 2.25 0.04 -1.70 16 26 C -0.11 -0.44 7.20 -25.92 -0.19 -0.63 16 27 C -0.15 -0.43 7.73 -25.92 -0.20 -0.63 16 28 C -0.10 -0.58 6.93 -25.92 -0.18 -0.76 16 29 C -0.13 -1.32 7.63 -25.92 -0.20 -1.52 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 31 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 32 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.35 5.67 7.90 -39.29 -0.31 5.36 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.05 7.82 -51.93 -0.41 0.64 16 37 H 0.41 3.28 6.18 -40.82 -0.25 3.03 16 38 H 0.12 0.29 7.34 -51.93 -0.38 -0.09 16 39 H 0.10 0.46 8.09 -51.93 -0.42 0.04 16 40 H 0.08 0.22 8.10 -51.93 -0.42 -0.20 16 41 H 0.09 0.12 7.64 -51.93 -0.40 -0.27 16 42 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.08 0.44 7.94 -51.93 -0.41 0.03 16 44 H 0.11 0.77 7.43 -51.93 -0.39 0.39 16 45 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -35.45 382.91 -7.35 -42.80 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -6.51 Total: 14.37 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -1.93 Total: 4.85 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.21 Total: -57.12 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: 0.17 Total: -22.40 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.07 Total: -3.09 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.45 -7.35 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713957546.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.397 kcal (2) G-P(sol) polarization free energy of solvation -35.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds